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121,935 results • Page
123 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
457
views
FreeBayes detection capacity
reads
freebayes
long
17 months ago by
quentinperriere
• 0
0
votes
2
replies
892
views
VCF annotation with gnomADv4 using R package
annotation
gnomADv4
R
VCF
17 months ago by
DKA
▴ 40
11
votes
7
replies
4.4k
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 17 months ago by
Dunois
★ 2.9k • written 17 months ago by
AdviceSeeker
▴ 10
0
votes
0
replies
459
views
Plotting heatmap of genes in each samples scRNA in Seurat
scRNA
heatmap
17 months ago by
Hien
• 0
0
votes
2
replies
953
views
Merging Outputs from plink --assoc and --hardy to Produce Table
PLINK
PANDAS
R
17 months ago by
Koketso
• 0
1
vote
3
replies
1.5k
views
Extracting data from a local NCBI taxonomy database
R
NCBI
xml
E-utilities
Blast
updated 17 months ago by
josev.die
▴ 70 • written 18 months ago by
Begonia_pavonina
▴ 210
0
votes
0
replies
574
views
Novel cyclic peptide structure prediction
protein
structure-prediction
alphafold
peptide
updated 17 months ago by
Ram
45k • written 17 months ago by
menyawino
• 0
0
votes
0
replies
471
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
17 months ago by
Physalia-courses
★ 2.6k
1
vote
3
replies
1.4k
views
Ensembl gene id conversion
biomart
ensembl
updated 17 months ago by
ATpoint
89k • written 17 months ago by
naveedhasan2000
▴ 10
1
vote
2
replies
1.0k
views
Extracting information from gff3 file produced by augustus
augustus
gff3
updated 17 months ago by
Istvan Albert
103k • written 17 months ago by
Jiang
• 0
91
votes
24
replies
30k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
microarray
enrichment
RNA-Seq
GSEA
updated 17 months ago by
Gordon
• 0 • written 5.0 years ago by
Hamid Ghaedi
3.3k
2
votes
3
replies
962
views
Deseq2 : Paired analysis or otherwise
linear-regression
paired-analysis
DESeq2
longitudinal-analysis
updated 17 months ago by
ATpoint
89k • written 17 months ago by
IM
• 0
2
votes
1
reply
789
views
How to highlight genes on genome visual reprezentation/what tool to use?
gene
genome
updated 17 months ago by
Alex Reynolds
36k • written 17 months ago by
shiksha
▴ 10
1
vote
1
reply
1.0k
views
adding gene and CDS feature types in ensemble gtf annotation with transcript and exon features
GTF
GFF
transcript
CDS
exon
updated 17 months ago by
Pratik
★ 1.1k • written 17 months ago by
Sadik Muzemil
▴ 20
0
votes
0
replies
432
views
Different flagstat number after using MergeBamAlignment
MergeBamAlignment
samtools
flagstat
17 months ago by
ThomasLam
• 0
3
votes
4
replies
1.5k
views
How to download large-scale cDNA sequences from NCBI effectively ?
NCBI.
cDNA
updated 17 months ago by
Pierre Lindenbaum
166k • written 17 months ago by
Sony
▴ 20
0
votes
0
replies
812
views
Core SNP tree VS. concatenated core genome tree
phylogenetic
tree
SNP
17 months ago by
YiweiZhu
▴ 30
11
votes
9
replies
14k
views
10 follow
Genome assembly statistical tools
Assembly
statistics
updated 17 months ago by
skdv2522
• 0 • written 6.1 years ago by
margab
▴ 10
3
votes
6
replies
1.8k
views
Ciriquant not configuring hisat2 indexed files
ciriquant
17 months ago by
Atul K.
• 0
3
votes
1
reply
722
views
How to handle more than 1 SRA Run per Experiment?
SRA
Preprocessing
updated 17 months ago by
ATpoint
89k • written 17 months ago by
Janmajay
▴ 10
0
votes
2
replies
933
views
Help with understanding the identifier mapping tables in the backend of HUMAnN
metagenomics
metacyc
enzyme
biobakery
humann
17 months ago by
O.rka
▴ 750
0
votes
6
replies
1.7k
views
PacBio adapters in transcriptome assembly from short read data?
adapter
transcriptome
sequencing
pacbio
vecscreen
17 months ago by
Dunois
★ 2.9k
1
vote
1
reply
683
views
How do I identify gene duplication or paralogs in an annotated reference genome assembly
blast
duplication
paralog
genome
updated 17 months ago by
san96
▴ 190 • written 17 months ago by
brimaloney24
• 0
4
votes
7
replies
1.5k
views
DESeq2 Multifactor Design
RNA-seq
DESeq2
updated 17 months ago by
Ram
45k • written 17 months ago by
AHerik
▴ 40
5
votes
5
replies
1.7k
views
Blacklist for bacterial genome [ChIPseq]?
ChIPseq
Blacklist
updated 17 months ago by
Ram
45k • written 2.3 years ago by
Emily Wasson
▴ 30
0
votes
0
replies
547
views
SeuratDisk: including "counts" dataset in conversion to AnnData
Seurat
SeuratDisk
AnnData
updated 17 months ago by
Ram
45k • written 17 months ago by
roussine
▴ 10
0
votes
0
replies
453
views
I am getting more annotation hits from HOMER than I have actual peaks. Is that normal?
ATAC-seq
HOMER
17 months ago by
Ronin
▴ 10
4
votes
4
replies
3.2k
views
How do I install plink2 on a mac?
plink2
plink
updated 17 months ago by
zx8754
12k • written 17 months ago by
emilija.romic
▴ 10
0
votes
5
replies
1.3k
views
Is it possible to set different tracks to the same scale in JBrowse
track
jbrowse
updated 17 months ago by
Ram
45k • written 17 months ago by
Jose
• 0
7
votes
7
replies
1.6k
views
Can you suggest a protein PDB that has two chainst but only 50 total number of atoms?
protein
pdb
protein-databank
updated 17 months ago by
Matthias Zepper
5.1k • written 17 months ago by
4fzcgueyp5
• 0
1
vote
2
replies
1.1k
views
Forum:
VCF bulk handling
bcftools
SnpEff
WGS
VEP
VCF
17 months ago by
Javier
• 0
4
votes
13
replies
2.2k
views
RNAseq of primary tumor and metastases in two different organ
metastases
RNA-seq
DEG
R
updated 17 months ago by
BioinfGuru
★ 2.1k • written 17 months ago by
matteo.levorato
• 0
2
votes
1
reply
602
views
VEP annotation --per_gene allele choice
VEP
updated 17 months ago by
Ram
45k • written 17 months ago by
atariw
▴ 10
4
votes
4
replies
1.6k
views
Why number of interactions decreased in current string database for plasmodium
string
interactions
ppi
updated 17 months ago by
damian.szk
▴ 80 • written 17 months ago by
rohitsatyam102
▴ 940
0
votes
2
replies
723
views
Are GeneExpression Subtype annotations removed from TCGA-GBM?
tcga-gbm
subtyping
tcga
updated 17 months ago by
Zhenyu Zhang
★ 1.3k • written 17 months ago by
Apollonia
• 0
1
vote
1
reply
592
views
RNA seq normalization and gene gene correlation
rna-seq
pearson-correlation
vst
updated 17 months ago by
Ram
45k • written 17 months ago by
Fish
• 0
0
votes
0
replies
499
views
KaryoPlot: Gene coverage over centromeric regions
Gene
coverage
Centromere
Bedtools
17 months ago by
Mary
• 0
0
votes
0
replies
531
views
Protein stability analysis
mutation
analysis
17 months ago by
marco.barr
▴ 180
1
vote
4
replies
1.1k
views
what is the normal range of htseq-count output for homo sapiens RNA-Seq
Transcriptomics
htseq-count
RNA-Seq
NGS
hisat2
updated 17 months ago by
BioinfGuru
★ 2.1k • written 17 months ago by
Morteza
• 0
3
votes
1
reply
737
views
how to change the gene header names in a fasta file?
fasta
bioawk
awk
seqkit
updated 17 months ago by
Ram
45k • written 17 months ago by
rj.rezwan
▴ 20
1
vote
1
reply
656
views
How do I get the 3bp sequence on either side of a co-ordinate
SAM
genomics
sequencing
updated 17 months ago by
Ram
45k • written 17 months ago by
nrav58
• 0
4
votes
4
replies
1.7k
views
Annotation using Pfam
annotation
metagenomic
Protein
Pfam
updated 12 months ago by
Mensur Dlakic
★ 30k • written 17 months ago by
Md Moinuddin
• 0
2
votes
0
replies
449
views
Tool:
pySEACR
Peak-Calling
CUT-and-RUN
17 months ago by
Adam
▴ 30
5
votes
3
replies
1.0k
views
Ensembl assembly choice for DNA reference with no combined primary assembly
alignment
HISAT2
RNA-Seq
ensembl
Assembly
updated 17 months ago by
GenoMax
154k • written 17 months ago by
AHerik
▴ 40
0
votes
0
replies
419
views
Multiple Spike-Ins
MeRIP
Spike-In
17 months ago by
Adam
▴ 30
0
votes
0
replies
370
views
Tools for Sequence Consensus
Consensus-Sequence
bacteria
updated 17 months ago by
Ram
45k • written 17 months ago by
Reno
• 0
0
votes
0
replies
520
views
News:
Online course: Meta-analysis in R
Meta-Analysis
R
updated 17 months ago by
Ram
45k • written 17 months ago by
Physalia-courses
★ 2.6k
0
votes
1
reply
789
views
Biopython Blastn Error: CPU usage limit was exceeded appears for certain files
Sequences
Python
Blast
updated 17 months ago by
GenoMax
154k • written 17 months ago by
Phi
• 0
5
votes
4
replies
4.8k
views
Motif analysis of DMRs (Differentially Methylated Regions) by HOMER
next-gen
updated 17 months ago by
Ram
45k • written 8.1 years ago by
inschigu
▴ 30
1
vote
0
replies
513
views
phasing tumor long-reads
nanopore
ONT
haplotag
phasing
tumor
16 months ago by
eebloom
▴ 110
121,935 results • Page
123 of 2439
Recent Votes
What happened to biomart.org
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
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Recent Replies
Comment: real time PCR data analysis
by
ATpoint
89k
I cannot guide on GraphPad. It's commercial software so better contact their support.
Answer: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
DE genes in bulk RNASeq is what DESeq2 was made for, so why wouldn't you use it? RPKM is not an appropriate normalization method here. M…
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
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