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121,935 results • Page
125 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
293
views
cibersortx colnames
gema122
17 months ago by
gem1
▴ 10
10
votes
37
replies
18k
views
21 follow
Convert Gene IDs of Tomato Sol Database
tomato
gene
updated 17 months ago by
aziz.hammou
• 0 • written 10.2 years ago by
kevluv93
▴ 170
0
votes
2
replies
907
views
Beagle imputation
beagle
17 months ago by
mahlet.teka
• 0
12
votes
2
replies
1.4k
views
News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
17 months ago by
David Langenberger
11k
0
votes
2
replies
801
views
How to detect and visualize ORFs in bacterial genome?
statistics
visualization
ORFs
genome
17 months ago by
marongiu.luigi
▴ 760
6
votes
13
replies
14k
views
8 follow
biomaRt: Timeout on getBM().
r
biomart
ensembl
updated 17 months ago by
Mike Smith
★ 2.1k • written 4.2 years ago by
lincaijin1994
▴ 50
0
votes
8
replies
6.7k
views
8 follow
cellranger mkref failed
next-gen-sequencing
software-error
RNA-seq
updated 17 months ago by
EricYang
• 0 • written 6.1 years ago by
Dan
▴ 180
0
votes
0
replies
444
views
Confused about the results of a function in dada2 pipeline sample inference step
Microbiome
R
dada2
17 months ago by
Mohamed Samir
▴ 30
1
vote
4
replies
1.7k
views
I want to calculate if the sample has whole genome duplication event or not?
sequencing
wgs
17 months ago by
Hyper_Odin
▴ 320
2
votes
4
replies
961
views
Addmetadata to seurat obj
seurat
17 months ago by
synat.keam
▴ 120
7
votes
8
replies
2.5k
views
Why are the basics so complicated? Basic coverage filtering for VCF files
filter
vcf
coverage
updated 17 months ago by
spen
▴ 40 • written 17 months ago by
MBarcelo
▴ 40
5
votes
5
replies
1.5k
views
NCBI MEGABLAST versus UCSC BLAT
blast
blat
alignment
megablast
updated 17 months ago by
noodle
▴ 650 • written 17 months ago by
a615ebfb
▴ 60
0
votes
0
replies
454
views
Methylation array analysis using dmpFinder
epic
methylation
normalization
dmp
mset
17 months ago by
Roy
▴ 20
2
votes
0
replies
490
views
News:
Online course: Genome Annotation
Genome-Assembly
RNA-seq
Genome-Annotation
updated 17 months ago by
Ram
45k • written 17 months ago by
Physalia-courses
★ 2.6k
0
votes
4
replies
1.2k
views
How to use pre-alignments by bowtie2
ATAC-seq
Bowtie2
17 months ago by
Aki
▴ 20
0
votes
0
replies
519
views
Confused by the `--ld-window` flag in Vcftools. What does the number of SNPs between SNPs mean?
tabix
vcftools
17 months ago by
rijan_dhakal2055
▴ 10
1
vote
4
replies
1.2k
views
Database or Tool: Identifying Gene Regions (Exon/Intron/UTR) from Chromosome Position
gene-region
biomart
ucsc-browser
intron
exon
updated 17 months ago by
GenoMax
154k • written 17 months ago by
kelpotus22
• 0
0
votes
5
replies
1.0k
views
Used featureCounts to generate a count matrix for sc RNA-seq and it has all 0s.
scRNA-seq
updated 17 months ago by
GenoMax
154k • written 17 months ago by
Shay
• 0
1
vote
1
reply
1.1k
views
Extract bubbles in pangenome graph
graph
pangenome
bubble
gfa
updated 17 months ago by
colindaven
8.0k • written 18 months ago by
polag01
▴ 10
0
votes
0
replies
345
views
Databases with GoF (Gain of Function) annotations.
gof
lof
gain-of-function
17 months ago by
_quantum_girl_
▴ 60
0
votes
2
replies
945
views
Problem with downloading genome in SnpEff
SnpEff
17 months ago by
Javier
• 0
2
votes
3
replies
1.2k
views
Using GPUs in snakemake
Parabricks
gpu
snakemake
slurm
17 months ago by
raphael.B
▴ 540
3
votes
7
replies
2.2k
views
STARsolo ; Reads are NOT mapped to transcriptome
STARsolo
updated 17 months ago by
GenoMax
154k • written 17 months ago by
gdfsnkfns
• 0
0
votes
0
replies
520
views
Comparison between Bracken outputs
Bracken
Kraken
Taxonomy
17 months ago by
SushiRoll
▴ 140
0
votes
4
replies
1.1k
views
Adaptive sampling for whole chromosomes
T2T
Nanopore
AdaptiveSampling
aneuploidy
centromeres
17 months ago by
njornet
▴ 20
0
votes
0
replies
374
views
DESeq2 LRT divergent DEGs ?
interaction
LRT
deseq2
17 months ago by
klervi-lugue
• 0
3
votes
0
replies
819
views
Herald:
The Biostar Herald for Tuesday, April 09, 2024
herald
17 months ago by
Biostar
3.6k
9
votes
4
replies
1.1k
views
Ubuntu storage space is decreasing automatically
ubuntu
storage
updated 17 months ago by
colindaven
8.0k • written 17 months ago by
analyst
▴ 70
0
votes
2
replies
853
views
BLASTP short sequences (<20aa) - interpreting results
blast
sequence
blastp
alignment
17 months ago by
neish
• 0
0
votes
1
reply
507
views
BCFTools install vcfmerge.o error
vcfmerge.o
BCFTools
updated 15 months ago by
Ram
45k • written 17 months ago by
jaime alvarez
▴ 30
0
votes
0
replies
737
views
Job:
Bioinformatics PhD position in Aarhus, Denmark
PhD
Genomics
Cancer
updated 17 months ago by
Ram
45k • written 17 months ago by
besen
• 0
3
votes
3
replies
1.1k
views
rRNA depletion of RIP-seq samples
rRNA
RIP-seq
updated 17 months ago by
noodle
▴ 650 • written 17 months ago by
CrisRisu
• 0
16
votes
11
replies
3.3k
views
7 follow
How I know if it is a batch effect or are real differences between my controls and treatments?
RNA-seq
Transcriptomics
ComBat-seq
Batch-Effect
updated 17 months ago by
GenoMax
154k • written 17 months ago by
alejandro.mejiam1
▴ 20
0
votes
4
replies
860
views
What is the samtools flag used in bamPEFragment?
deeptools
updated 17 months ago by
GenoMax
154k • written 17 months ago by
Soohyun
• 0
2
votes
5
replies
1.4k
views
Creating an index from multiple .fsa files
HISAT2
BWA
Alignment
17 months ago by
theworldsagainstme
• 0
0
votes
0
replies
600
views
batch correction: cds from seurat
batch-correction
R
seurat
monocle3
cds
updated 17 months ago by
Ram
45k • written 17 months ago by
sooni
▴ 20
0
votes
0
replies
366
views
Seurat Package
seurat
17 months ago by
odi
▴ 10
0
votes
0
replies
394
views
RUVg correction
differential-expression
ruvseq
updated 17 months ago by
Ram
45k • written 17 months ago by
Shaimaa Gamal
▴ 10
0
votes
0
replies
472
views
How to annotate pairwise p value from limma (3 groups) in a combine multiple boxplot?
limma
boxplot
17 months ago by
Chris
▴ 360
0
votes
2
replies
581
views
small RNA creating .bam from .sam file
RNA-Seq
updated 17 months ago by
GenoMax
154k • written 17 months ago by
demekemewa13
• 0
2
votes
3
replies
1.1k
views
Tool:
DEGap - an online tool for Differential Gene Expression analysis
degap
17 months ago by
Anastasia
▴ 10
0
votes
0
replies
415
views
Methylation workflow problem
rstudio
methylation
updated 17 months ago by
Ram
45k • written 17 months ago by
Roy
▴ 20
2
votes
2
replies
1.2k
views
How to row normalize a matrixplot?
scRNA-seq
RNA-seq
single-cell
scanpy
17 months ago by
bioinfo
▴ 160
0
votes
5
replies
1.4k
views
seg fault, core dumped with manta 1.6.0
manta
gdb
updated 17 months ago by
Ram
45k • written 18 months ago by
Greg
• 0
0
votes
1
reply
599
views
Pattern of GC content across reads from fastp
multiqc
ddRAD
updated 17 months ago by
GenoMax
154k • written 17 months ago by
jberg
• 0
2
votes
4
replies
2.4k
views
PLINK p value returning NA
GWAS
PLINK
updated 17 months ago by
chrchang523
11k • written 3.0 years ago by
Sin Yu, Lin
• 0
2
votes
6
replies
1.5k
views
create a gene count matrix csv file from seurat object
Seurat
sparseMatrix
17 months ago by
jkim
▴ 220
0
votes
2
replies
638
views
Mapping of OMA IDs to UniProtKB AC
OMA
orthologs
updated 17 months ago by
GenoMax
154k • written 17 months ago by
george
• 0
4
votes
4
replies
1.0k
views
How to fetch published paper of a BioProject
BioProject
pumbed
NGS
17 months ago by
Morteza
• 0
0
votes
0
replies
415
views
RNA velocity after SoupX in single cell data
soupX
scrna
transcriptomics
nuclei
updated 17 months ago by
GenoMax
154k • written 17 months ago by
shersky
• 0
121,935 results • Page
125 of 2439
Recent Votes
C: how to format the featurecounts output ?
C: how to format the featurecounts output ?
What happened to biomart.org
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
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Recent Replies
Answer: how to explain the sample size discrepancy in UCSC Xena
by
i.sudbery
22k
Because there wasn't RNA-seq analysis performed for every sample in TCGA?
Answer: Linear regression vs DESeq2 models for DEG analysis
by
i.sudbery
22k
There are two main problems with using linear models for read-count based analyses. Firstly, linear models assume a normal distribution…
Comment: real time PCR data analysis
by
ATpoint
89k
I cannot guide on GraphPad. It's commercial software so better contact their support.
Answer: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
DE genes in bulk RNASeq is what DESeq2 was made for, so why wouldn't you use it? RPKM is not an appropriate normalization method here. M…
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
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