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121,935 results • Page
126 of 2439
Sort: Rank
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Votes
Replies
4
votes
5
replies
1.6k
views
Getting refseq assembly accession numbers from list of species names
haystac
accession
refseq
assembly
ncbi
updated 18 months ago by
GenoMax
154k • written 18 months ago by
Kuldeep
• 0
1
vote
1
reply
1.1k
views
PLINK multivariable GLM output: p-value without BETA and SE
linear-model
glm
plink
updated 17 months ago by
chrchang523
11k • written 17 months ago by
dsbusiness135
▴ 10
1
vote
2
replies
714
views
In need of help with my RNA velocity trajectory inference pipeline!
RNAvelocity
17 months ago by
phhelou5
▴ 10
13
votes
13
replies
21k
views
9 follow
How Do I Translate Multiple (More Than 25000) Dna Sequences With Different Frames To Protein Seuquence?
dna
protein
updated 17 months ago by
ummeswaiba
• 0 • written 11.7 years ago by
biostar
▴ 170
0
votes
0
replies
988
views
Job:
PhD in bioinformatics / computational biology
NGS
Omics
Evolution
Aging
17 months ago by
Arne.Sahm
• 0
3
votes
2
replies
1.9k
views
latest dbSNP (ncbi) which genome assembly
ncbi
dbSNP
assembly
genome
17 months ago by
jaime alvarez
▴ 30
6
votes
8
replies
3.9k
views
Simple explanation and usage of WGCNA package?
wgcna
RNA-Seq
ChIP-Seq
updated 17 months ago by
mflab
• 0 • written 5.3 years ago by
m.sadman.sakib
▴ 120
0
votes
1
reply
644
views
How to do further funtional analysis of DEG KeggGet output list?
KEGGREST
DESEQ2
RNA-Seq
DEG
17 months ago by
joana.maclean
• 0
6
votes
6
replies
6.0k
views
10x to cloupe
single-cell-transcriptomics
10x
17 months ago by
firestar
★ 1.7k
0
votes
1
reply
498
views
DEseq2 experiment design
RNA-seq
R
DESeq2
updated 17 months ago by
Ram
45k • written 17 months ago by
naveedhasan2000
▴ 10
8
votes
10
replies
2.0k
views
bash script
whole-genome-sequencing
updated 17 months ago by
Ram
45k • written 17 months ago by
bestone
▴ 30
0
votes
0
replies
528
views
Confusion with somatic variant calling: Advice on Ensembl-compatible resources?
GATK
Mutect2
ensembl
17 months ago by
DGTool
▴ 290
0
votes
1
reply
602
views
Constructing a pangenome
pangenome
rice
updated 17 months ago by
Michael
56k • written 17 months ago by
analyst
▴ 70
1
vote
2
replies
969
views
permutation test in edgeR
rna-seq
edgeR
updated 17 months ago by
Gordon Smyth
★ 8.3k • written 17 months ago by
Netanel
• 0
0
votes
0
replies
398
views
News:
Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics
vegan
R
updated 17 months ago by
Ram
45k • written 17 months ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
932
views
Different rsID for the same chromsome, position, ref & alt allele depending on different data sources. Which one should I use?
UKB
rsID
UKB-PPP
ensembl-vep
dbsnp
17 months ago by
lsy9
▴ 20
1
vote
1
reply
3.2k
views
Job:
Full Stack Web Developer - Cambridge, UK
JavaScript
Python
Visualisation
written 9.8 years ago by
Richard Smith
▴ 410
0
votes
0
replies
396
views
How can I plot the PCA with the raw count mRNA seq data?
PCA
normalization
updated 17 months ago by
Ram
45k • written 17 months ago by
Yoomi
▴ 20
0
votes
0
replies
327
views
Blast2GO Fisher test
Fisher-test
Go-annotation
Blast2GO
updated 17 months ago by
Ram
45k • written 17 months ago by
BlackM
• 0
0
votes
1
reply
1.1k
views
Is it possible to use RSEM with BAM files from STAR alignment?
RSEM
alignment
Pre-computed
STAR
updated 17 months ago by
Thind amarinder
▴ 340 • written 3.3 years ago by
knowNot
• 0
1
vote
2
replies
1.6k
views
Putting colors of different samples on PCA plot
PCA
updated 17 months ago by
Ram
45k • written 17 months ago by
prity6459
• 0
0
votes
1
reply
573
views
How do I run fastq-dump on multiple prefetched files at once?
sratoolkit
fastq-dump
updated 17 months ago by
Pierre Lindenbaum
166k • written 17 months ago by
biotrekker
▴ 110
0
votes
2
replies
700
views
Regions not clear in VCF
whole-exome
variant-calling
updated 17 months ago by
Ram
45k • written 17 months ago by
priya.bmg
▴ 70
0
votes
0
replies
397
views
NA values showing at duplicacy removal step
Microarray
RNA-Seq
17 months ago by
prithvi.mastermind
▴ 60
2
votes
2
replies
848
views
ComplexHeatmap with specific rownames
ComplexHeatmap
updated 17 months ago by
Ram
45k • written 17 months ago by
mrashad
▴ 80
0
votes
0
replies
342
views
Comparing molecular subtypes identified by microarray or bulk RNASeq in ssRNASeq data
microarrray
single-cell
RNASeq
subtype
17 months ago by
akhattri
▴ 50
2
votes
4
replies
1.1k
views
How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
sratoolkit
prefetch
updated 17 months ago by
Pierre Lindenbaum
166k • written 18 months ago by
biotrekker
▴ 110
1
vote
2
replies
951
views
What is the recomended z-score for filtration in GWAS studies
GWAS
updated 18 months ago by
LauferVA
4.8k • written 18 months ago by
Orlando
• 0
0
votes
1
reply
684
views
Human whole genome sequence analysis
Human
genome
updated 18 months ago by
dthorbur
★ 3.1k • written 18 months ago by
Mahnoor
• 0
1
vote
0
replies
455
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
17 months ago by
Physalia-courses
★ 2.6k
3
votes
1
reply
832
views
Can anyone give me the code for in-silico digestion of whole genome with two restriction enzyme in "R" through Biostrings package?
whole-genome
In-silico-digestion
updated 17 months ago by
Ram
45k • written 18 months ago by
Bhowmik
▴ 10
1
vote
3
replies
1.2k
views
cibersort. problem
cibersort
gema122
updated 11 months ago by
Amairani
• 0 • written 18 months ago by
gem1
▴ 10
1
vote
3
replies
1.1k
views
multiple sequence alignment
BLAST
multiple-sequence-alignment
clustal-omega
MSA
updated 17 months ago by
Ram
45k • written 18 months ago by
catherinemaria2728
• 0
2
votes
2
replies
2.3k
views
GSEA on non-model organisms: How to handle duplicated KEGG KO
KEGG
GSEA
clusterProfiler
GhostKOALA
updated 18 months ago by
alserg
★ 1.0k • written 18 months ago by
mksaad28
• 0
3
votes
3
replies
1.0k
views
Visualize pathways from MSigDB
MSigdb
18 months ago by
Chris
▴ 360
2
votes
5
replies
4.0k
views
primer design to discriminate sequences in intron-exon MSA
primer
MSA
intron-exon
updated 18 months ago by
Amruta
• 0 • written 8.0 years ago by
Anand Rao
▴ 640
1
vote
2
replies
1.2k
views
Prediction of microRNA targets
ncRNA
Targetscan
microRNA
MirDB
Miranda
17 months ago by
ivmstalker
• 0
3
votes
2
replies
1.7k
views
kraken2 vs krakenuniq
KrakenUniq
kraken2
18 months ago by
pinheirofabiano
▴ 130
2
votes
9
replies
2.4k
views
chromHMM annotations
chromHMM
updated 8 months ago by
Bioinformatics_16
• 0 • written 18 months ago by
nswati106
• 0
0
votes
1
reply
580
views
Best way to add alter fastq file by adding short repeats
fastq
updated 18 months ago by
GenoMax
154k • written 18 months ago by
pairedttest
▴ 40
3
votes
7
replies
1.6k
views
Artificial deletion in bam
bam
updated 18 months ago by
Zhenyu Zhang
★ 1.3k • written 18 months ago by
enee
▴ 20
0
votes
3
replies
881
views
Help with finding Genomic coordinates and exon they belong to
genomics
updated 18 months ago by
Pierre Lindenbaum
166k • written 18 months ago by
Sayantani
• 0
1
vote
1
reply
587
views
which reference does remora tests/data use?
alignment
reference
updated 18 months ago by
GenoMax
154k • written 18 months ago by
anne
• 0
1
vote
5
replies
1.4k
views
Need information on how filterAndTrim function from the DADA2 pipeline was developed
filterAndTrim
dada2
updated 18 months ago by
GenoMax
154k • written 18 months ago by
George
• 0
0
votes
1
reply
867
views
POD5 files
ONT
updated 18 months ago by
GenoMax
154k • written 18 months ago by
marco.barr
▴ 180
0
votes
4
replies
1.3k
views
Ensembl stable ID cross-references
database
parsing
cross-reference
ensembl
updated 17 months ago by
Ben Moore
★ 2.4k • written 18 months ago by
J
• 0
1
vote
4
replies
1.1k
views
How to get human-mouse conservation score from UCSC
conservation
mouse
IGV
human
score
18 months ago by
diqixiaoyaoer
▴ 20
8
votes
2
replies
1.5k
views
News:
FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
18 months ago by
David Langenberger
11k
2
votes
3
replies
1.4k
views
Read Classification from ONT
classification
reads
nanopore
updated 18 months ago by
dthorbur
★ 3.1k • written 18 months ago by
maevalefeuvre
• 0
4
votes
4
replies
1.7k
views
Error Codes in Snakemake
python
snakemake
18 months ago by
888pea
▴ 10
121,935 results • Page
126 of 2439
Recent Votes
Answer: how to explain the sample size discrepancy in UCSC Xena
Answer: Linear regression vs DESeq2 models for DEG analysis
C: how to format the featurecounts output ?
C: how to format the featurecounts output ?
What happened to biomart.org
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
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Recent Replies
Comment: how to explain the sample size discrepancy in UCSC Xena
by
nuorain
▴ 40
Thank you very much.
Answer: how to explain the sample size discrepancy in UCSC Xena
by
i.sudbery
22k
Because there wasn't RNA-seq analysis performed for every sample in TCGA?
Answer: Linear regression vs DESeq2 models for DEG analysis
by
i.sudbery
22k
There are two main problems with using linear models for read-count based analyses. Firstly, linear models assume a normal distribution…
Comment: real time PCR data analysis
by
ATpoint
89k
I cannot guide on GraphPad. It's commercial software so better contact their support.
Answer: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
DE genes in bulk RNASeq is what DESeq2 was made for, so why wouldn't you use it? RPKM is not an appropriate normalization method here. M…
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
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