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121,961 results • Page
192 of 2440
Sort: Rank
Rank
Views
Votes
Replies
2
votes
2
replies
1.2k
views
DepMap Portal
Top-Codependencies
23 months ago by
roya.solhi
▴ 10
2
votes
2
replies
3.5k
views
How to remove the default title to a DimPlot() splitted into two by group.by ?
Dimplot
title
Seurat
23 months ago by
camillab.
▴ 160
0
votes
6
replies
2.1k
views
How to make a proteome file
proteome
genomics
updated 23 months ago by
GenoMax
154k • written 23 months ago by
sophiematthews03
• 0
3
votes
6
replies
1.7k
views
how can I solve a problem in applying a mutation on protein sequence?
protein
hgvs
updated 23 months ago by
Ram
45k • written 23 months ago by
Atefeh
▴ 10
1
vote
2
replies
1.5k
views
How do I remove duplicate SNPs in PLINK from more than 1 data set?
SNPs
Plink
23 months ago by
u19010843
• 0
2
votes
1
reply
897
views
BLAST database error
blastdb
blast
updated 23 months ago by
GenoMax
154k • written 23 months ago by
Mero
• 0
0
votes
0
replies
565
views
Issues while running abundance_estimates_to_matrix.pl
RSEM
Denovo
RNA-seq
abundance-estimate
23 months ago by
Foad
▴ 10
0
votes
0
replies
364
views
Breast Cancer Bone Metastasis Spatial Data
breast-cancer
spatial-data
updated 23 months ago by
Ram
45k • written 23 months ago by
Anst
▴ 50
2
votes
6
replies
5.7k
views
Basecalling with dorado
variants
dorado
alignment
methylation
nanopore
21 months ago by
eebloom
▴ 110
0
votes
0
replies
720
views
SPOTlight error with Visium data
transcriptome
R
spatial
visium
SPOTlight
updated 23 months ago by
zx8754
12k • written 23 months ago by
Hien
• 0
0
votes
1
reply
756
views
Need assistance in proper binding of cysteines
Protein
modelling
updated 23 months ago by
manaswwm
▴ 570 • written 23 months ago by
Kirill
▴ 10
4
votes
2
replies
916
views
Sequence Comparison for Fungal Genomes
Comparative-genomics
updated 23 months ago by
dthorbur
★ 3.1k • written 23 months ago by
akaur
▴ 10
0
votes
0
replies
551
views
DiffBind:Using diffbind with only two replicates per condition
R
ChipSeq
DiffBind
23 months ago by
shashankt693
• 0
0
votes
5
replies
1.4k
views
Confirming called variants
GATK
gnomAD
updated 23 months ago by
barslmn
★ 2.4k • written 23 months ago by
priya.bmg
▴ 70
1
vote
0
replies
748
views
Integrating 10x scRNAseq and multiomics
multiomics
integration
scRNAseq
23 months ago by
Nico80
▴ 80
3
votes
2
replies
895
views
Converting STAR Gene-level alignment to TPM expression
RNA-seq
updated 23 months ago by
ATpoint
89k • written 23 months ago by
CTLong
▴ 140
1
vote
2
replies
1.3k
views
Job:
Job:Data Scientist / Bioinformatician / Statistician at University of California San Francisco (UCSF)
statistician
bioinformatics-programmer
psychiatry
UCSF
updated 23 months ago by
Ram
45k • written 23 months ago by
belinda.wang
▴ 10
4
votes
2
replies
1.1k
views
Can I still remove ambient RNA if I do not have raw barcode-gene matrix?
SoupX
23 months ago by
malonzm1
▴ 20
0
votes
2
replies
1.4k
views
PLINK | Updating sex information issue
plink
updated 14 months ago by
alpha
• 0 • written 23 months ago by
S
• 0
0
votes
0
replies
654
views
How to subsample ATAC fragment file?
single-cell
atac-seq
scRNA-seq
updated 18 months ago by
Ram
45k • written 23 months ago by
bioinfo
▴ 160
0
votes
4
replies
1.2k
views
rnaSPAdes running out of memory: oom error
metatranscriptome
rnaSPADES
SPADES
memory
23 months ago by
ha2606
• 0
0
votes
4
replies
1.1k
views
Transferring xyz coordinates between PDB files
pdb
updated 23 months ago by
Almira
• 0 • written 23 months ago by
aaggencc
• 0
0
votes
1
reply
512
views
How to reduce the redundance in proteomic dataset
proteomics
updated 23 months ago by
GenoMax
154k • written 23 months ago by
luileo_10
• 0
4
votes
2
replies
2.2k
views
Annoate complex heatmap columns
complexheatmap
updated 23 months ago by
Ram
45k • written 23 months ago by
synat.keam
▴ 120
5
votes
5
replies
1.4k
views
Counting 705 fasta header characters ('>') in human genome
human-genome
genetics
updated 23 months ago by
ATpoint
89k • written 23 months ago by
10mz1
▴ 10
10
votes
31
replies
14k
views
10 follow
Tutorial:
OrthoMCL installation on Ubuntu Linux
ubuntu
orthomcl
mysql
linux
updated 23 months ago by
ha2606
• 0 • written 7.7 years ago by
vimalkvn
▴ 320
0
votes
0
replies
538
views
Salmon - mapping outputs
transcriptome
RNAseq
Salmon
23 months ago by
Lada
▴ 40
4
votes
3
replies
2.7k
views
plotting gene structure in R
visualisation
gene-structure
23 months ago by
chictu
▴ 10
0
votes
1
reply
1.2k
views
What do HAP A1 and HAP A2 mean in plink --freqx output?
plink
updated 23 months ago by
bk11
★ 3.1k • written 23 months ago by
_quantum_girl_
▴ 60
0
votes
2
replies
740
views
RNAseq with panel of normals
rna-seq
panel-of-normals
23 months ago by
Jay
• 0
2
votes
0
replies
973
views
Herald:
The Biostar Herald for Monday, October 23, 2023
herald
23 months ago by
Biostar
3.6k
1
vote
1
reply
1.6k
views
How to split a folder full of pod5 by phred score?
phred
qc
ont
nanopore
pod5
updated 23 months ago by
GenoMax
154k • written 23 months ago by
compuTE
▴ 140
1
vote
2
replies
1.7k
views
Rename of assays for SingleCellExperiment object in R
SingleCellExperiment
R
updated 23 months ago by
Ram
45k • written 23 months ago by
Hien
• 0
0
votes
4
replies
1.1k
views
Tools for Visium 10x data alignment on a reference genome
Spatial-Transcriptomics
alignment
Visium
spaceranger
10x
23 months ago by
Sergio
• 0
1
vote
2
replies
904
views
The impact of DNA methylation of different regions?
CpG
DNA-methylation
BS-seq
23 months ago by
-IvanWoo-
• 0
3
votes
2
replies
1.1k
views
How convert data into wider table and calculate Dunnet test between samples with multiple concentration?
R
aov
ANOVA
updated 23 months ago by
Ram
45k • written 23 months ago by
star
▴ 350
0
votes
3
replies
978
views
Queries on Tophat and Cufflinks Data
tophat
cufflinks
RNA-seq
updated 23 months ago by
dsull
★ 7.7k • written 23 months ago by
kerrybear20
• 0
0
votes
0
replies
716
views
P-value for comparing GSVA scores
GSVA
updated 23 months ago by
Ram
45k • written 23 months ago by
e.r.zakiev
▴ 260
2
votes
2
replies
1.0k
views
vg call coverage/suppport
vg
23 months ago by
Danny
• 0
0
votes
4
replies
1.5k
views
X-axis order changes in Mirrored Stacked Bar Plot
ggplot2
updated 23 months ago by
Basti
★ 2.1k • written 23 months ago by
rohitsatyam102
▴ 940
1
vote
2
replies
1.8k
views
Use mutate inside for loop and write the results
R
dplyr
updated 23 months ago by
Ram
45k • written 23 months ago by
poltora4enko
▴ 10
0
votes
2
replies
862
views
GSEA test
enrichment
GSEA
single-cell
23 months ago by
jackson9
▴ 10
1
vote
4
replies
2.3k
views
bowtie mismatch 0 alignment output
sequencing
bam
sam
bowtie
rna-seq
updated 23 months ago by
feng10749
• 0 • written 4.3 years ago by
kb_93
▴ 10
1
vote
3
replies
2.3k
views
Phyloseq sample data error: non-zero dimensions?
R
object
phyloseq
gwas
updated 23 months ago by
Chris Dean
▴ 420 • written 23 months ago by
Emily
▴ 70
0
votes
2
replies
829
views
nodes are in "alloc" state but no jobs running
slurm
updated 23 months ago by
davidenoma
▴ 50 • written 23 months ago by
g744695539
• 0
3
votes
4
replies
2.7k
views
Question on samtools view with --fast option
parallel
samtools
fq2bam
bam
compression
23 months ago by
tamu.anand
▴ 30
0
votes
0
replies
1.0k
views
Job:
Assistant/Associate Teaching Professor at Emory University, Department of Quantitative Theory and Methods
Data-Science
Data-Visualization
Teaching-Track
Faculty
updated 23 months ago by
Ram
45k • written 23 months ago by
kevin.mcalister
• 0
16
votes
9
replies
2.5k
views
Blog:
NGS one-liner to call variants
shell
sequencing
updated 23 months ago by
Ram
45k • written 23 months ago by
barslmn
★ 2.4k
0
votes
0
replies
630
views
Different “Reads Mapped Confidently to Transcriptome” values in scRNA
QC
rnaseq
single-cell
23 months ago by
chisqga
• 0
0
votes
2
replies
1.4k
views
To draw a heatmap displaying DEGs associated with a specific KEGG pathway.
heatmap
KEGG
DEG
updated 23 months ago by
yhdist
▴ 70 • written 23 months ago by
Biostars2200
• 0
121,961 results • Page
192 of 2440
Recent Votes
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sra-explorer : find SRA and FastQ download URLs in a couple of clicks
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Comment: ESTIMATE (Estimation of STromal and Immune cells in MAlignant Tumor tissues usin
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write.table(df1, "df1.txt", sep = "\t", row.names = T, col.names = T, quote = FALSE)
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154k
That is good confirmation. Bacl to the error message. > I don't know how to fix this, given that I already did the trimming steps. DId yo…
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Honestly, those things shouldn't result in a considerable discrepancy. The largest difference will come from the post-processing & analysi…
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When you say vastly different, what do you mean exactly? Does your top 100 up/down not match theirs at all?
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Have a look at tools like SnpEff or Ensembl VEP. Perhaps your bacterial sp is included.
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Oh, ok. It seems like NCBI stores the files in SRA format (thus needing conversion and database lookups by sra toolkit tools) and EBI store…
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Got it https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-inclusion-list-formerly-barcode-whitelist
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