Limit : all time
all time today this week this month this year
121,907 results • Page 39 of 2439
Sort: Rank
Rank Views Votes Replies
1
vote
1
reply
359
views
Comparison of metabolic data between groups (WT vs KO)
metabolism
updated 7 months ago by 89k • written 7 months ago by • 0
1
vote
6
replies
919
views
Estimating mRNA Half-Life from Single Time Point Data Using mRNA/Ribo-seq Expression Data
regression mRNA RNA-seq Ribo-seq
updated 7 months ago by 45k • written 7 months ago by • 0
0
votes
0
replies
282
views
Random effect model RNAseq
rma metafor
7 months ago by a.stef.44 ▴ 10
2
votes
3
replies
698
views
Barley, alignment rates
barley alignment-rate
7 months ago by IrK ▴ 100
0
votes
0
replies
677
views
News: Introduction to Python for biologists course
NGS Python Programming
7 months ago by Physalia-courses ★ 2.6k
38
votes
15
replies
42k
views
12 follow
Convert between RefSeq and Ensembl Transcript?
refseq ensembl
updated 7 months ago by 153k • written 11.2 years ago by ▴ 540
0
votes
5
replies
924
views
HELP with PacBio RS reads for epigenetics
PacBio bax.h5 RS
updated 7 months ago by ▴ 510 • written 7 months ago by • 0
0
votes
2
replies
587
views
Post-sequencing basecalling error in MinKNOW
minknow dorado long reads nanopore
7 months ago by Cedrick • 0
0
votes
2
replies
495
views
why knocking down LEMD2 using siRNA gives handful DEGs?
knockdown siRNA LEMD2
7 months ago by goyal.shiwali ▴ 20
4
votes
4
replies
1.3k
views
'Model matrix not full rank'
deseq2 design matrix
updated 7 months ago by 5.8k • written 7 months ago by • 0
0
votes
1
reply
548
views
Change threads (-T) in online Galaxy for featureCounts
featureCounts RNA-seq threads Galaxy
updated 7 months ago by 153k • written 7 months ago by • 0
1
vote
1
reply
579
views
Process Illumina Sequencing Data.
human illumina libraries
updated 7 months ago by 153k • written 7 months ago by ▴ 10
3
votes
1
reply
565
views
vgconstruct crashes
vg
updated 7 months ago by ▴ 160 • written 8 months ago by ▴ 80
0
votes
0
replies
923
views
Tutorial: ONLINE COURSE – Machine Learning using Python (MLUP01)
Machine-Learning Python
updated 7 months ago by 45k • written 7 months ago by ▴ 110
0
votes
2
replies
521
views
Demultiplexing Custom Barcodes
RNA-seq Custom-Barcodes Demultiplexing
7 months ago by meetmet ▴ 10
4
votes
6
replies
1.1k
views
Sequence length distribution after trimming
bbduk Trimming fastqc fastq
updated 7 months ago by 153k • written 7 months ago by ▴ 20
0
votes
1
reply
463
views
de novo and reference-guided assemblies
de-novo reference-guided assemblies
updated 7 months ago by 45k • written 7 months ago by • 0
1
vote
0
replies
20k
views
Herald: The Biostar Herald for Monday, January 27, 2025
herald
updated 7 months ago by 103k • written 7 months ago by 3.6k
2
votes
6
replies
917
views
Differential Expression Analysis in single-cell data
single-cell
7 months ago by frarodmar17 • 0
1
vote
1
reply
504
views
Accounting for Within-Subject Correlation in Microbiome Multiclass Classification
microbiome classification longitudinal panel repeated-measures
updated 7 months ago by ★ 30k • written 7 months ago by ▴ 20
0
votes
7
replies
913
views
Genome 2 GEnome Alignment and Unmapped contigs extraction
assemblies minimap2 genome alignment fungus
7 months ago by SomeOne ▴ 240
1
vote
1
reply
453
views
Merge genotypes of two vcf files
vcf vcftools
updated 7 months ago by 166k • written 7 months ago by ▴ 350
3
votes
1
reply
657
views
Abyss output scaffolds.fa file contains kmer sized scaffolds
scaffolds abyss
updated 7 months ago by 15k • written 7 months ago by ▴ 70
1
vote
2
replies
593
views
Detect changes in cell viability with bulk RNA-seq?
DEG viability RNA
7 months ago by txema.heredia ▴ 250
2
votes
2
replies
640
views
Origin of unmapped reads
scrna bam mapping sequencing shortreads
updated 7 months ago by ★ 3.1k • written 7 months ago by • 0
0
votes
0
replies
246
views
PNI Cohort for Gastric Gastric
Invasion Dataset Request Perineural
7 months ago by p-radwan.derbala • 0
1
vote
3
replies
946
views
biopython UI?
biopython
7 months ago by tada • 0
0
votes
0
replies
307
views
Using Limma (Batch effect removal bulk rna-seq)
batchremoval bulkrnaseq limma
updated 7 months ago by 153k • written 7 months ago by ▴ 10
0
votes
1
reply
884
views
Covarites in GWAS via GCTA
covariate GCTA fastGWA
updated 7 months ago by 153k • written 11 months ago by ▴ 50
2
votes
1
reply
807
views
Question about Kraken2 core_nt vs nt database results.
database kraken2 kmer ncbi
updated 7 months ago by 153k • written 7 months ago by ▴ 60
0
votes
0
replies
447
views
News: Spring School in Bioinformatics - ONLINE, 31 March–4 April 2025
NGS Phylogenomics RNAseq
7 months ago by Physalia-courses ★ 2.6k
1
vote
2
replies
635
views
Protein annotation, gene annotation, hordeum vulgare RNA-Seq
protein vulgare RNA-Seq hordeum gene
updated 7 months ago by 7.9k • written 7 months ago by ▴ 10
1
vote
1
reply
1.2k
views
On applying spike-in-derived scaling factors to ChIP-seq data: adjust for background signal (input) or not?
spike-in deepTools normalization ChIP-seq scaling-factor
7 months ago by kalavattam ▴ 380
0
votes
4
replies
1.1k
views
WGCNA: Can we use high power for signed network?
Powerselection RNA-seqdata WGCNA Networkanalysis
7 months ago by Vinesh ▴ 10
1
vote
2
replies
873
views
SRA fastq modify by 10x valid fastq
fastq
7 months ago by wyuan37 • 0
0
votes
0
replies
432
views
How can I get raw CPTAC protein quantification data ?
CPTAC proteomics proteins python transcriptome
7 months ago by AlexStar ▴ 200
0
votes
0
replies
419
views
News: Workshop: Virtual RNA-seq Analysis, February 4-6
gene RNASeq workshop expression
7 months ago by spu24005 • 0
2
votes
1
reply
538
views
Integration of Cut&Tag to ATACseq and RNAseq data - impact of a mutation
RNAseq Cut_Tag ATACseq
updated 7 months ago by 5.1k • written 7 months ago by • 0
3
votes
3
replies
1.9k
views
Started running InterProscan locally. Looks like the process isn't progressing well. Can you look at the report?
genome interproscan annotation
updated 7 months ago by • 0 • written 11 months ago by ▴ 100
0
votes
1
reply
513
views
biomaRt R package
R biomaRt transcript_id ensembl
updated 7 months ago by ▴ 570 • written 7 months ago by ▴ 70
0
votes
2
replies
864
views
How to Process PacBio RS FASTQ Files from SRA for Genome Coassembly with Illumina Reads?
coassembly fastq pacbio
updated 7 months ago by ▴ 50 • written 10 months ago by • 0
0
votes
0
replies
334
views
How to convert omim database files to annovar compatible
OMIM WES Annovar WGS
7 months ago by aiswaryabioinfo ▴ 30
1
vote
1
reply
717
views
How can I add new column into Metadata of Seurat.obj in Xenium analysis
seurat xenium spatial transcriptomics
updated 7 months ago by 6.5k • written 7 months ago by ▴ 20
1
vote
1
reply
916
views
Facing issue while running PHASTEST docker
phage prophage phastest docker
updated 7 months ago by 153k • written 9 months ago by ▴ 10
6
votes
1
reply
610
views
FPKM without normalization
FPKM classification Normalization
updated 7 months ago by 89k • written 7 months ago by ▴ 20
0
votes
3
replies
695
views
PacBio long read processing
PacBio_sequel_II long_read
updated 7 months ago by 153k • written 7 months ago by • 0
1
vote
4
replies
1.2k
views
16S SILVA with Kraken2 doesn't classfying at species level
Taxonomy 16S Kraken2 Metagenomics SILVA
7 months ago by Aytaç • 0
14
votes
12
replies
2.8k
views
What additional info is found in BAM files from PacBio HiFi compared to Fastq files
bam hifi fastq pacbio
updated 7 months ago by ▴ 510 • written 8 months ago by 11k
1
vote
3
replies
891
views
Reducing runtime of low-score alignments
python pairwise-alignment alignment
updated 8 months ago by 103k • written 8 months ago by • 0
2
votes
4
replies
970
views
Discover novel transcripts
transcriptomic assembly stringtie stringtie--merge
updated 8 months ago by 103k • written 8 months ago by ▴ 20
121,907 results • Page 39 of 2439
Recent Votes
Answer: Tried building a compact sequence format with 4-bit storage
Tried building a compact sequence format with 4-bit storage
Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: STARlong for pacbio Isoseq reads
Comment: Automatically annotating a feature using a genbank file
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Recent Locations • All
United States, 2 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 10 minutes ago
United States, 33 minutes ago
United States, 46 minutes ago
Australia, 56 minutes ago
United States, 57 minutes ago
United States, 1 hour ago
Recent Awards • All
Popular Question to alison.ludzki • 0
Popular Question to Pranava ▴ 10
Popular Question to ramiro.barrantes ▴ 60
Popular Question to npb27 ▴ 10
Popular Question to Apprentice ▴ 190
Popular Question to pranavdatar01 • 0
Popular Question to Matteo Ungaro ▴ 130
Recent Replies
Comment: Hifiasm is getting killed while trying to assemble a genome by pranavdatar01 • 0
I did subsample the data to 30x coverage. I did run hifiasm on it, the log file did show some contents, but hifiasm ended again, stating th…
Comment: Tried building a compact sequence format with 4-bit storage by Alex Reynolds 36k
Using four bits for storage won't beat 2bit, of course, but direct access to a sequence of interest sounds interesting and useful and might…
Comment: Hifiasm is getting killed while trying to assemble a genome by Panos ★ 1.8k
Why don't you subsample your HiFi reads and try running hifiasm again? Maybe this will help if you have memory problems. However, I haven't…
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
RNA-seq is very good at relative analyes. It would be straightforward to determine which miRNAs are relatively more abundant, compared to o…
Comment: Tried building a compact sequence format with 4-bit storage by Pranava ▴ 10
Woah!!! Thank you very much, Matthias. I honestly didn't even know some of those existed and I will definitely go through them and try to u…
Answer: Tried building a compact sequence format with 4-bit storage by Matthias Zepper 5.1k
Hello Pranava, Thanks for sharing your repository. Devising a new file format is an interesting undertaking and certainly a task with many…
Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest by piffelpaff • 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads by YuZJ • 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq by acvill ▴ 350
Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
Comment: Getting just fastqc.zip file? by GenoMax 153k
Yes, You can either use it on command line or use the graphical user interface.
Traffic: 3621 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6