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685 results • Page 3 of 14
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Job: Bioinformatics Analyst - Q2 Lab Solutions
Linux UNIX Perl Python
updated 4 days ago by 39k • written 4.1 years ago by ▴ 10
2
votes
5
replies
1.6k
views
NarrowPeak format -Peak field
ChIP-Seq dnase-seq bed
updated 3 days ago by 72k • written 2.7 years ago by ▴ 50
2
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1
reply
1.6k
views
Job: Bioinformatician - Databiology Mexico
Mexico
updated 5 days ago by 39k • written 4.1 years ago by 13k
1
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1
reply
1.6k
views
Bioinformatics tools for Plasmid detection
short-read plasmid
updated 3 days ago by 39k • written 3.9 years ago by ▴ 10
1
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0
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1.6k
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Job: Postdocs/Scientists: Long Reads, Epigenomes and Human Diseases
RNA-Seq long-reads epigenomics ChIP-Seq
updated 5 days ago by 39k • written 4.1 years ago by ▴ 120
8
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4
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1.6k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 2 days ago by 39k • written 3.7 years ago by ★ 2.4k
0
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0
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1.6k
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Job: Research Postdoc Fellow - Statistical Genetics and Genomics
research statistical-genetics genomics
updated 5 days ago by 39k • written 4.2 years ago by ▴ 10
3
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10
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1.6k
views
6 follow
How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by cell barcode?
10xgenomics RNAseq scRNA CB
updated 4 hours ago by ▴ 580 • written 10 months ago by ▴ 20
0
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1
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1.6k
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Job: Research Scientists in Bio Data Science/Bioinformatics/Computational Biology
networks single-cell
updated 2 days ago by 39k • written 3.8 years ago by • 0
0
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0
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1.6k
views
Job: Procter & Gamble - Bioinformatics Scientist
bioinformatics-scientist
updated 4 days ago by 39k • written 4.0 years ago by • 0
0
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1
reply
1.6k
views
Job: Bioinformatician at Canton Biologics, NGS (Guangdong province, China)
genome RNA-Seq next-gen
updated 2 days ago by 39k • written 3.8 years ago by • 0
4
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8
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1.6k
views
How to extract promoter sequences from a plant draft genome?
promoter genome
updated 2 days ago by 39k • written 3.7 years ago by ▴ 100
0
votes
1
reply
1.6k
views
Job: postdoc position in AI and drug discovery
snp Assembly
updated 5 days ago by 39k • written 4.1 years ago by • 0
0
votes
1
reply
1.6k
views
Job: Computational biologist interested in neurodegenerative disorders and cancer research
Neuroscience R Cancer Computational-biology
updated 5 days ago by 39k • written 4.1 years ago by ▴ 80
2
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0
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1.6k
views
News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
replies
1.5k
views
Job: Postdoctoral Fellow in Bioinformatics of Vector-Borne Diseases
alignment Tick-borne Veterinary next-gen 16S-rRNA
updated 5 days ago by 39k • written 4.1 years ago by • 0
0
votes
0
replies
1.5k
views
Job: Scientist III/IV - Bioinformatics, Cancer Immunology-195107 Boehringer Ingelheim Pharmaceutical Ridgefield,CT USA
single-cell-genomics R cancer-immunology
updated 5 days ago by 39k • written 4.2 years ago by ▴ 20
0
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0
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1.5k
views
Job: Postdoctoral associate in evolutionary computational biology (Dessimoz lab, Lausanne, Switzerland)
comparative-genomics phylogenomics
updated 5 days ago by 39k • written 4.2 years ago by ▴ 740
1
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1
reply
1.5k
views
Job: PhD student in Computer Science and Bioinformatics (R1)
Barcelona network machine-learning PhD
updated 3 days ago by 39k • written 3.9 years ago by ▴ 20
4
votes
6
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1.5k
views
Why weblogo of biopython doesn't work?
Biopython Weblogo
updated 3 days ago by • 0 • written 9 months ago by ▴ 20
1
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0
replies
1.5k
views
Job: Bioinformatics PhD position in Next Generation Sequencing analysis
metagenomics illumina minion
updated 3 days ago by 39k • written 3.9 years ago by 4.8k
1
vote
4
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1.5k
views
Time series event recurrence comparison
recurrence time-series
updated 5 days ago by 39k • written 6.7 years ago by 10k
2
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0
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1.5k
views
News: Call for Abstracts: BOSC 2019: Bioinformatics Open Source Conference
BOSC Conference Open-Source
updated 5 days ago by 39k • written 4.2 years ago by ★ 2.2k
1
vote
2
replies
1.5k
views
Megahit Assembly - command line error
assembly fastq megahit
updated 4 days ago by 39k • written 3.9 years ago by • 0
1
vote
0
replies
1.5k
views
Job: Sr. Bioinformatics Scientist (Boston Children's Hospital)
bioinformatics-scientist
updated 4 days ago by 39k • written 4.0 years ago by ▴ 10
0
votes
0
replies
1.5k
views
Job: PhD Student position in Systems Biology and Bioinformatics @ UAB (Birmingham, AL)
Networks data-analysis RNA-Seq
updated 2 days ago by 39k • written 3.8 years ago by • 0
6
votes
2
replies
1.5k
views
Problem installing bamtools
bamtools
updated 5 days ago by 39k • written 4.1 years ago by ▴ 20
5
votes
4
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1.5k
views
Detection of DE genes among different tissues of an organism during time - RNA seq
detection DE-genes multi-treatments time-series
updated 5 days ago by 39k • written 6.9 years ago by ▴ 720
1
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2
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1.5k
views
News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 5 days ago by 39k • written 4.1 years ago by ▴ 580
0
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0
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1.5k
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Job: Python Software Engineer with Experience with Workflow Management, Whitefish, MT
python cwl wdl
updated 5 days ago by 39k • written 4.1 years ago by ▴ 100
0
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0
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1.5k
views
Job: Junior Software Engineer, Computational Genomics Platform
uc-santa-cruz UCSC engineer genomics
updated 4 days ago by 39k • written 3.9 years ago by ▴ 30
0
votes
0
replies
1.5k
views
Job: Computational Science Research Assistant/Associate
embryogenesis single-cell methylome
updated 5 days ago by 39k • written 4.2 years ago by • 0
1
vote
1
reply
1.5k
views
Forum: Free Bioinformatics Training Resources (for non-bioinformaticians)
RNA-Seq
updated 4 days ago by 39k • written 4.0 years ago by ▴ 340
1
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1
reply
1.4k
views
Job: Bioinformatics Systems Analyst
ucsc sys-analyst genomics
updated 2 days ago by 39k • written 3.8 years ago by ▴ 30
10
votes
7
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1.4k
views
Forum: Is trimming always better?
RNA-Seq QC trimmomatic trimming
updated 4 days ago by 39k • written 3.9 years ago by ▴ 330
3
votes
0
replies
1.4k
views
Job: American Museum of Natural History - Bioinformatics Specialist
genomics
updated 2 days ago by 39k • written 3.7 years ago by ▴ 30
0
votes
0
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1.4k
views
Job: Post-Doctoral Research Fellow, Cancer Genomics (Fred Hutch - Seattle, WA)
seattle
updated 4 days ago by 39k • written 4.0 years ago by ▴ 10
5
votes
5
replies
1.4k
views
Improve illumina short read assembly using PacBio long reads
Assembly Illumina genome PacBio
updated 4 days ago by 39k • written 4.0 years ago by ▴ 20
2
votes
1
reply
1.4k
views
News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 5 days ago by 39k • written 4.2 years ago by 9.9k
3
votes
1
reply
1.4k
views
Performing Hmmer search against pfam versus UniRef100
hmmer pfam alignment
updated 2 days ago by 39k • written 3.8 years ago by • 0
0
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1
reply
1.4k
views
Job: Geneious Prime: tutor wanted
alignment sequence assembly SNP next-gen
updated 4 days ago by 39k • written 4.0 years ago by • 0
1
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0
replies
1.4k
views
Job: Bioinformatics Analyst I-II, Prostate Cancer Program - Fred Hutch (Seattle, WA)
seattle research
updated 2 days ago by 39k • written 3.7 years ago by ▴ 10
4
votes
4
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1.4k
views
Forum: When will the hg19/grch37 finally become obsolete?
Reference-Genome
updated 4 days ago by 39k • written 4.0 years ago by ▴ 10
0
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0
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1.4k
views
Job: Software Engineer, UCSC Genomics Institute
Genomics UCSC Programmer Engineer
updated 2 days ago by 39k • written 3.8 years ago by ▴ 30
2
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1
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1.4k
views
Job: We are seeking a Scientist II/Sr. Scientist in Bioinformatics!
RNA-Seq
updated 5 days ago by 39k • written 4.2 years ago by ▴ 20
0
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0
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1.4k
views
Job: Senior Bioinformatics Scientist, Pfenex Inc, San Diego, CA
bioinformatician
updated 4 days ago by 39k • written 4.0 years ago by ★ 2.1k
0
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0
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1.4k
views
Job: Senior/Principal Bioinformatician - Cancer Dependency Map Analytics
R Perl Python
updated 5 days ago by 39k • written 4.1 years ago by ▴ 230
0
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0
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1.4k
views
Job: Bioinformatician / Biostatistician (Gladstone Institutes - San Francisco, CA)
UCSF Statistics RNA-Seq next-gen
updated 3 days ago by 39k • written 3.9 years ago by ▴ 960
0
votes
1
reply
1.4k
views
Job: Bioinformatician - Genome Biologics - Accelerating Drug Development
Machine-learning R RNA-seq next-gen python
updated 5 days ago by 39k • written 4.1 years ago by ▴ 650
0
votes
0
replies
1.4k
views
Job: PhD Position in Statistical Phylogenetics (Species Tree Estimation)
modeling Bayesian-statistics phylogenetics
updated 2 days ago by 39k • written 3.8 years ago by ▴ 10
685 results • Page 3 of 14
Recent Votes
Pseudogenes-Can we use them?
Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential expression analysis
During RNA-seq analysis a lot of pseudogenes come up as DE
Answer: How to calculate TPM from featureCounts output
A: Problem regarding Software installation.
Answer: How To Predict Pseudogenes In A Genome
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Recent Replies
Comment: Obtain a --gene-trans-map file after rnaSPAdes by GenoMax 129k
You could try to create one: https://groups.google.com/g/trinityrnaseq-users/c/qPbWnLl4iY0 While this is from an unrelated software the so…
Comment: CNNScoreVariants Error by Pierre Lindenbaum 154k
that is another question
Comment: Difference between USCS exon coordinates and ensembl by amy__ ▴ 50
Hi @atpoint, I went to http://genome.ucsc.edu/cgi-bin/hgTables and did: 1. ![enter image description here][1] then: 2. ![enter image…
Comment: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex by Kermit ▴ 80
See also: https://www.biostars.org/p/9535550/#9536086
Answer: Getting species names and taxa id from assembly accession number by MirianT_NCBI ▴ 580
Hi, As an alternative, you could use [NCBI Datasets][1] for this task. NCBI Datasets allows users to retrieve metadata reports in JSON or…
Comment: Optimum setting for local blastp for ~10K sequences by sodiumnitrate ▴ 20
Thank you for the info! It turned out that running all 10k at once is actually faster than running one or two at a time!
Answer: Installation of PPFinder by GenoMax 129k
Since the software is still [**listed on the Brent lab**][1] website your best bet would be to email the investigator and ask that they fix…
Comment: How to calculate TPM from featureCounts output by rpolicastro 12k
If you want to go that route, yes.
Comment: Difference between USCS exon coordinates and ensembl by ATpoint 72k
What did you download from UCSC? 1-off usually means one file is zero-based and the other 1-based. BED files from UCSC are 0-based, Ensembl…
Comment: Alignment of case vs. control from different origin by sativus • 0
Thank you kindly for the explanation, it is highly appreciated. I suppose i was a bit confused as you quite often see people validating the…
Answer: Gene enrichment analysis by nux ▴ 10
Hello. For this you have to select 'hyper' as your method and then provide a complete list of genes which both include the candidate and no…
Comment: CNNScoreVariants Error by bestone ▴ 10
Thank you for replying I updated it worked but it gives another Error A USER ERROR has occurred: Invalid argument ' -V'.
Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG by jrodrigu • 0
Thank you so much. I made the suggested changes. However, I still have the same problem. Please check the new log file. https://github.c…
Comment: Getting same value for start and end position, "DNA methylation" by ATpoint 72k
That's a comment, not an answer, please use `ADD COMMENT`.
Comment: Getting same value for start and end position, "DNA methylation" by bioinfo_ga ▴ 50
Are you working on bisulphite kind of data or chipseq ????
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