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RNASeq data with showing other cell types/decontamination
rnaseq rna-seq written 28 minutes ago by ccha97 • 20
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How to get results from random intercepts using the limma package?
R written 1 hour ago by macsuejacques • 0 • updated 1 hour ago by Kevin Blighe ♦ 66k
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Change text/label size in cnetplot function
dose cnetplot clusterprofiler written 1 hour ago by koaeb • 10
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How to determine specific gene sequence from NGS data
next-gen sequencing written 2 hours ago by missTique • 0
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Differentials Expressed Genes from each state in Monocle 2
dge monocle2 state single cell written 4 hours ago by David_emir • 370
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GSEA Preranked Query
geapreranked gsea written 4 hours ago by ASid • 10
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How can I count the symbols in a given string / text and, as a result of that count, remove the characters
genome gene alignment sequence software error written 6 hours ago by projetoic • 0
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Good bowtie2 alignment rate and low mapping on transrate ...
software error assembly rna-seq written 10 hours ago by doinelpierrot • 0 • updated 7 hours ago by Istvan Albert ♦♦ 85k
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automation of shell script where I want to change filename after every result
automation shell written 5 months ago by shalinikaushik1293 • 0 • updated 9 hours ago by Biostar ♦♦ 20
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Estimating Transcript Abundance with RSEM
rna-seq written 11 hours ago by wes • 20 • updated 11 hours ago by i.sudbery ♦ 9.3k
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(Closed) re-format (transform) data
assembly written 12 hours ago by natasha.tilich • 10
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Getting reference genome for vcf2maf tool
genome assembly sequence perl written 12 hours ago by skiesareforflying • 20
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40
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converting vcf into simpler version for downstream analysis
snp written 13 hours ago by evafinegan • 0
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42
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GATK gvcf file header [ALT=<ID=NON_REF]
gatk gvcf header gvcf written 14 hours ago by BioRyder • 180
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42
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gene network analysis
R network tutorial rna-seq written 14 hours ago by adR • 40 • updated 13 hours ago by Kevin Blighe ♦ 66k
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27
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Filtering bacterial genes by annotations and finding common genes between genomes
cordon codon usage bias annotations filtering written 13 hours ago by dch014 • 0
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32
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Is imputation of genotyped data for GWAS necessary?
imputation geneitcs gwas written 14 hours ago by new_bee_GWAS • 0
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.gds format for SAIGEgds
saige .gds written 14 hours ago by abyousaf • 0
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How to use fastq subreads PacBio reference free for analysis
reference free pacbio subreads rna-seq written 18 hours ago by sam891 • 10
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32
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HI optional field in paired-end reads
hi tag optional field nh written 18 hours ago by roccostorace • 20
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44
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HAPDeNovo python script step 3 errors
software error python hapdenovo denovomutations written 1 day ago by kittys • 0
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database of ligand->receptor->TF(or transcriptional target)
database signaling written 19 days ago by mk • 160 • updated 1 day ago by Biostar ♦♦ 20
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How to extract reads with exact match with BBDuk?
fastq bbduk rna-seq written 6 days ago by camelest • 10
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How did Garrison et al. simulate the sequence reads used to evaluate vg in their Nature Biotechnology paper?
vg written 1 day ago by ac2278 • 0
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42
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Defining groups in Geo2R
bacteria geo2r rna-seq written 1 day ago by ssaron • 0
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41
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How to select the right protein structural data from PDBbind database as there are multiple options?
virtual screening protein structure hit detection written 1 day ago by entropy • 50
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"MethylKit" package for WGBS data
next-gen sequencing written 1 day ago by shrinka.genetics • 0
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extract single contig from fasta file based on name?
assembly written 1 day ago by goatsrunfaster • 20
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Illumina reads mapped back onto contigs have gaps
illumina mapping written 1 day ago by kristina.mahan • 100
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Efficiently obtaining genomic transcript levels of thousands of patient samples by cancer types
rna-seq cancer written 1 day ago by theodore.killian • 10
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