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written 3.6 years ago by
aleix.arnau1990 • 10
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145
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written 26 days ago by
lavanya.kannan • 0
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9 hours ago by
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written 5 weeks ago by
rob.costa1234 • 120
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21 hours ago by
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written 1 day ago by
agata88 • 610
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1 day ago by
kennethcondon2007 • 840
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written 5 weeks ago by
2351688559 • 10
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1 day ago by
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Recent Replies
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C: added missing bases at the beginning of a sequences by
bio90029 • 10
Thanks, but how do I know if the bases are missing at the end or the beginning of the sequences? ...
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jf • 0
yamule, thank you for catching that oversight on my part, that did fix the issue.
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Michael Love • 1.5k
Here's a link to an answer I wrote a few years ago for using the gene set testing package *goseq*...
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Hey! [There're][1] lots of info that can help you find what you're looking for! Don't miss out! -...
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C: Very low Bisulfite seq mapping efficiency (~0%) for paired end. by
cjgunase • 20
Thankx Devon, I tried BBMap and this script worked even better. now its mapping in paired-end wit...
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C: Indel detectors for Ion Torrent data by
cpad0112 • 2.3k
1. Was there a recalibration step with known indels post alignment? 2. You can also try PINDEL ...
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Pierre Lindenbaum ♦ 99k
Hello Vca80553! It appears that your post has been cross-posted to another site: http://seqanswe...
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A: Indel detectors for Ion Torrent data by
Kevin Blighe • 3.3k
I think that pindel is fine. The issue may relate to the general issues of calling indels from N...
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A: DESeq2 design and batch effect by
Kevin Blighe • 3.3k
Hi George, From my perspective, the best option to use is lengthScaledTPM, if at all possible. F...
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C: Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of refere by
Pierre Lindenbaum ♦ 99k
what was your exact command line please, and your java version.
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Pierre Lindenbaum ♦ 99k
ah, biostars messed up my code, I'll replace with a gist...
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Thanks for the note. > Maybe a clump of large amount of molecules confers some kind of prote...
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