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STREAM for identifying cell type
xcell rna-seq cell-type enrichment written 9 hours ago by kanwarjag • 890 • updated 3 hours ago by Kevin Blighe ♦ 21k
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SOAPdenovo statistics output for Nx
n50 soapdenovo assembly nx l50 written 7 weeks ago by deepti1rao • 0 • updated 3 hours ago by Biostar ♦♦ 20
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Deeptools plotHeatmap: too much black! missing data assigned incorrectly
plotheatmap deeptools missing data computematrix written 6 hours ago by davidcking.inbox • 0
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Matched paired DEA analysis of BRCA samples using TCGAbiolinks, works for paired = FALSE but not paired = TRUE
tcgabiolinks R rna-seq written 18 hours ago by aluesley1 • 20
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DESeq2 results difference between use of lfcThreshold and sequential cutoffs.
deseq2 written 8 hours ago by mccormack • 20 • updated 7 hours ago by cpad0112 ♦ 6.3k
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What is the definition of "multiply aligned" sequences compared to multiple aligned sequence
sequence alignment dna written 9 hours ago by beausoleilmo • 190
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538
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Input needed on conclusion reporting
de novo assembly alignment written 2.2 years ago by skbrimer • 500 • updated 9 hours ago by Biostar ♦♦ 20
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77
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Different output files from "Shapeit -check"
shapeit snp imputation strand alignment phasing written 10 days ago by lattes666 • 0
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Retrieve PubMed records based on some genes
gene python biopython pubmed written 12 hours ago by willson • 0
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(Closed) How to create multidimensional dictionary in python?
gtf python dataframe written 13 hours ago by Santiansiye • 0
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How to improve single-cells data ?
genome assembly next-gen sequence written 13 hours ago by darbinator • 0
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Twist Bioscience BAM example
data twist bam capture written 14 hours ago by sacha • 1.2k
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GTF file for HIV strain pNL4-3
annotation hiv mapping written 15 hours ago by caggtaagtat • 210
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What is the optimal read length filter for Kallisto post adapter removal?
kallisto rna-seq written 15 hours ago by bipin • 0
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5 follow
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Total CpG genome count
methylation rrbs bismark cpg written 1 day ago by rebekah_321 • 0 • updated 16 hours ago by maxime.policarpo • 20
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LncRNA isoforms RNA-seq
lncrnas isoforms rna-seq lncrna written 16 hours ago by Martin B. • 10
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#Cufflinks# Can I change the tracking id?
rna-seq written 1 day ago by hyeonjin • 0 • updated 16 hours ago by cpad0112 ♦ 6.3k
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Input type array and Output type file, possible in CWL ?
cwl written 17 hours ago by ttom • 170
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joinmap output from genotypes program of Stacks
linkage mapping stacks ddrad joinmap written 17 hours ago by jav • 0
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Can genomicranges do bedtools-like intersection operations?
R written 19 hours ago by endrebak • 640
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unmapped reads in paired-end run pf bowtie2
paired-end bowtie unmapped-reads written 20 hours ago by Assa Yeroslaviz • 1.1k
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SNPEff not showing SNP
annotation forum snpeff variant snp written 8 weeks ago by sanjay.bpkihs • 0 • updated 21 hours ago by cpad0112 ♦ 6.3k
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stacks denovo output directory can't be read in running genotypes program
linkage map stacks ddrad genotypes joinmap written 22 hours ago by jav • 0
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filter_fasta.py not removing sequences from fastq based on read IDs
sequencing fastq sequence qiime written 1 day ago by fjs5035 • 0 • updated 1 day ago by Vijay Lakhujani ♦ 2.5k
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2/50 inidividuals show missing data at almost all positions in final vcf generated using HaplotypeCaller
vcf gatk haplotypecaller missingdata written 1 day ago by shreyasibiswas88 • 30
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5 follow
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Help with Masters Dragon.
gene assembly alignment sequencing genome written 1 day ago by biology.dex • 0
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How can I determine differential ubiquitination of a particular protein using CPTAC proteomics data?
proteomics ubiquitination post-translational cptac written 1 day ago by Alonzo • 10
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Tool for grouping sequences into clusters with homology within each one above certain threshold?
sequence clustering ngs alignment written 1 day ago by prishly • 0
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Running DSK for multiple k values
k-mer written 1 day ago by sbdk82 • 30
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Error message on cufflinks: ImportError
cufflinks rna-seq written 1 day ago by florian.laforets • 0 • updated 1 day ago by Kevin Blighe ♦ 21k
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