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Answer: collapsing coordinate information from a blast result
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I think this program does almost exactly what you want.
https://sourceforge.net/projects/weinberg-overcluster2/
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i think `SAMPLES ,= glob_wildcards` is valid but i do prefer to know what I am trying to make rather than let a directory run the show http…
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Follow Jeremy's advice. Your Snakefile is badly formed and the line outside the rule breaks everything.
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I'd add to @genomax 's point that if you're going to run a search against `NR` on a local machine, it's probably unwise at this point to us…
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Ah wonderful, good to know! Brilliant answer and thanks for the code / outputs to back it up.
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> clients proprietary sequences which cannot by processed on public
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I would like to be able to do ‘blastp’ with clients proprietary sequences which cannot by processed on public website.
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> Does bedtools intersect automatically take this difference into account?
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This is a duplicate post of a question already asked here --> https://www.biostars.org/p/9470184
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