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How to ignore truncation error with PySam?
python sam alignment mapping pysam written 3 days ago by O.rka • 60 • updated 4 minutes ago by Biostar ♦♦ 20
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[SOLVED] How to expand a data.frame?
expand dataframe written 22 minutes ago by catechize.2.learn • 0
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How to separate mixed orientation raw illumina sequence into forward and reverse fastqs?
sequence next-gen written 24 minutes ago by will.wcb • 0
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calculation of sequqence-structure features of miRNA
gene triplet features of mirna sequence rna mirna written 28 minutes ago by pragyan.somi8 • 0
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So frustrated compiling necessary packages in a linux system
compile build linux written 40 minutes ago by johnnytam100 • 40
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List of transcription factor <-> gene ?
transcription factor written 1 hour ago by english.server • 50
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size considerations CWL Toil workflow step inputs
toil cwl written 1 hour ago by ionox0 • 180
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Could I delete the unzipped installation folder after building a package?
build unix linux written 5 hours ago by johnnytam100 • 40 • updated 3 hours ago by Medhat ♦ 7.9k
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How to Get Nucleotide/Allele Frequency Spectrum From NGS SAM/VCF File
genome frequency next-gen snp written 11 months ago by liaoyunshi • 0 • updated 6 hours ago by Biostar ♦♦ 20
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(Closed) typeset roxygen math (\eqn and \deqn content) in html output
R roxygen latex written 6 hours ago by mk • 20
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HISAT2 Indexing using annotation for Rattus_norvegicus
hisat2 annotation alignment ensembl index written 9 hours ago by neranjan • 0 • updated 9 hours ago by Medhat ♦ 7.9k
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how to find the target sequence for protein modeling?
gene sequence alignment written 12 hours ago by ashrafutm • 0
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5', 3' ASS and Intron retention read count using STAR out.tab
star rna-seq alternative splicing written 15 hours ago by thindmarsmission • 0 • updated 13 hours ago by zx8754 ♦ 5.4k
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TypeError: 'str' object is not callable
python written 13 hours ago by angelshiza • 10
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Coordinates for Gene in Unannotated Reference FASTA
annotation blast blat written 13 hours ago by gtasource • 20
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Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
genome chip-seq written 14 hours ago by goodez • 280
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37
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Visualize B-allele frequency on IGV for 2 samples
file-format igv written 16 hours ago by kuckunniwid • 20
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GRO-seq - low Same / Diff strand fold enrichment
gro-seq homer maketagdirectory written 16 hours ago by l.moreno.uva • 0
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Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R gdc rna-seq dna methylation written 16 hours ago by rjactonspsfcf • 70
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(Closed) Python Script to Calculate Total Number of genes in 3 ORF
gene python sequence written 17 hours ago by anasjamshed1994 • 0 • updated 17 hours ago by Pierre Lindenbaum ♦ 113k
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53
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What is an optical map ?
assembly scaffold optical map written 18 hours ago by Picasa • 380
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seqtk subseq command not pulling full fastq reads
next-gen sequencing written 8 weeks ago by kratnasiri • 0 • updated 18 hours ago by Biostar ♦♦ 20
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What to do with corrupted lane files
rna-seq lane written 18 hours ago by pentium3-user • 20 • updated 18 hours ago by genomax ♦ 57k
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37
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Trinity ERROR during assembling extracted reads
assembly trinity written 18 hours ago by evodevo110 • 0
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48
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Deeptools plotCorrelation function bug?
deeptools plotcorrelation written 19 hours ago by Zee_S • 20
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48
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speed up bcftools annotate command
next-gen bcftools snp written 20 hours ago by fenrir.sivar • 0 • updated 19 hours ago by RamRS ♦ 18k
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CIRCexplorer2 only looks for exonic circRNA
circexplorer circrna circular rna-seq written 19 hours ago by t.blasco95 • 0
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Merging fastq files
illumina fastq miseq merge rna-seq written 19 hours ago by william.mcentegart • 0
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38
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Mapping softwares setting minimum matching read length
genome assembly next-gen sequencing gapclosing written 19 hours ago by sumaluzn • 0
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Is there any website that shows the cell type for a given marker list?
cell biomarker clustering written 19 hours ago by Batu • 100
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