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runtime error in LDhat
genome ldhat snp population genetics written 10 minutes ago by prasundutta87 • 220
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How to run GeneMark for detection of frameshifted genes
gene frameshifts written 34 minutes ago by konstantinkul • 70
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(Closed) Shift label to upside in ggscatter graph
R ggscatter ggpubr written 22 hours ago by whrhkdrhs • 0 • updated 2 hours ago by zx8754 ♦ 5.3k
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116
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How to validate SNP if NCBI Genome remapping service as failed
gwas plink snp R written 24 days ago by Leonida Monaco • 20 • updated 2 hours ago by Biostar ♦♦ 20
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30
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monocle how to identify branches
monocle tool pseudotime rna-seq written 4 hours ago by hsu • 0
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39
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Determining differentially required genes between p53 WT or mutant cell lines from siRNA data and making a heatmap
R written 5 hours ago by lukewilliams22 • 0
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51
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Converting KEGG pathways to SBML with preserving compound and reaction identifiers
kgml keggtranslator stoichiometry matrix kegg sbml written 9 hours ago by Na Sed • 260
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71
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Trouble de-multiplexing single index paired-end illumina library
illumina singe index demultiplexing written 9 hours ago by caverill • 40
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72
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5 follow
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To fetch the reads which are being partially mapped to the genome
jvarkit hisat2 star rna-seq bowtie2 written 11 hours ago by swadha • 20 • updated 10 hours ago by genomax ♦ 57k
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73
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Separate Genome into Tiers
genome written 11 hours ago by angrypigeon • 120
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50
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(Closed) What software can estimate gene order in a FASTA or a FASTQ file and compute metrics based on a bag-of-words paradigm?
software bag-of-words gene order written 14 hours ago by pseudomonas_bioinformatics_uk • 0
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69
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Find SNPs present between multiple genomes
genome snp written 17 hours ago by wexadex • 0
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102
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gene expression for cancer identification
gene rna-seq written 17 hours ago by maryam.akram001 • 10
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reliability for the usage of merged GTF from tophat-cufflinks as an novel annotation?
cufflinks mats rna-seq alternative splicing written 22 hours ago by thindmarsmission • 0
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What is the ideal FDR and fold change cutoff to consider in a RNA-seq experiment and which one should be the priority for selecting the DEGs?
fdr deseq2 rna-seq deg fold change written 19 hours ago by aishu.jp • 10
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56
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Execute standalone hmmer with java
jmmer java written 20 hours ago by m.dornelles19 • 0
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276
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Should I remove samples after normalization of miRNA seq read counts ?
rna-seq edger mirnas written 8 months ago by Björn • 30 • updated 20 hours ago by Biostar ♦♦ 20
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145
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RNASeq - low correlation between samples
R correlation rna-seq written 2 days ago by pentium3-user • 20 • updated 21 hours ago by zx8754 ♦ 5.3k
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63
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Extracting Flanking Regions using Biopython
bedtools biopython written 21 hours ago by LindoNkambule • 0 • updated 21 hours ago by jrj.healey ♦ 7.6k
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46
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Rare variants imputation
imputation sequencing written 22 hours ago by reds.nik • 30
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95
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Python Script to Calculate Total Number of genes
python script hapatatis c virus written 22 hours ago by anasjamshed1994 • 0 • updated 22 hours ago by finswimmer ♦ 6.2k
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51
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Integrate several layers of biological information to build a biological network
network analysis data integration written 23 hours ago by lessismore • 500
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53
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Installing Bedtools with Cygwin fails.
bedtools cygwin written 23 hours ago by omer.k • 20
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48
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Small DNA-seq read files for tests
dna-seq next-gen written 23 hours ago by chefarov • 100
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39
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OMA standalone:"Error, (in ReadFastaWithNames) length(seqs) = length(refs), assertion failed"
oma written 23 hours ago by johan.aranberg • 0
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68
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Problem with extracting read counts from RNA seq file
software error featurecounts rna-seq rseqc written 1 day ago by popescuiofelia • 0
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80
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Removing overlaps in GRange function
iranges R granges firebrowse raster written 1 day ago by jmw730 • 0 • updated 1 day ago by zx8754 ♦ 5.3k
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45
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How to remove batch effects when i have different organs?
rna-seq written 1 day ago by jyshiningsoul • 0
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35
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augustus Bam2hints program creates an empty .gff file
augustus ab initio gene prediction genome analysis written 1 day ago by freddiejung • 20
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Gene regulatory networks from expression data
network rna-seq written 5 weeks ago by pixie@bioinfo • 1.3k • updated 1 day ago by Biostar ♦♦ 20
<prev • 18,612 results • page 1 of 621 • next >
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