updated 24 days ago by
andorjkiss
▴
40
•
written 15 months ago by
javanokendo
▴
60
2
votes
5
replies
1.6k
views
2
votes
5
replies
669
views
1
vote
5
replies
337
views
updated 15 days ago by
jkbonfield
★
1.2k
•
written 22 days ago by
sansan_96
▴
80
0
votes
5
replies
333
views
2
votes
5
replies
685
views
2
votes
5
replies
450
views
0
votes
5
replies
419
views
0
votes
5
replies
1.2k
views
updated 16 days ago by
Ram
43k
•
written 6.4 years ago by
pablo61991
▴
90
0
votes
5
replies
290
views
updated 1 day ago by
GenoMax
141k
•
written 2 days ago by
Bertalan_Takacs
▴
90
0
votes
5
replies
1.6k
views
0
votes
5
replies
290
views
5
votes
5
replies
7.2k
views
updated 15 days ago by
veldahan86
•
0
•
written 3.8 years ago by
Assa Yeroslaviz
★
1.8k
2
votes
5
replies
444
views
0
votes
5
replies
5.9k
views
updated 6 days ago by
ndm1096
•
0
•
written 6.5 years ago by
ac.research
▴
30
0
votes
5
replies
401
views
0
votes
5
replies
531
views
3
votes
5
replies
408
views
updated 23 days ago by
GenoMax
141k
•
written 23 days ago by
e.r.zakiev
▴
200
0
votes
4
replies
195
views
just now by
Patadu94
•
0
3
votes
4
replies
3.5k
views
0
votes
4
replies
1.1k
views
1
vote
4
replies
344
views
21 days ago by
diqixiaoyaoer
▴
10
0
votes
4
replies
337
views
1
vote
4
replies
812
views
0
votes
4
replies
316
views
2
votes
4
replies
395
views
updated 16 days ago by
GenoMax
141k
•
written 16 days ago by
pl.terzian
•
0
0
votes
4
replies
318
views
2
votes
4
replies
1.4k
views
0
votes
4
replies
250
views
1 day ago by
sehriban.buyukkilic
▴
10
1
vote
4
replies
2.4k
views
updated 8 days ago by
Ram
43k
•
written 4.8 years ago by
saksis.rihards
▴
10
1
vote
4
replies
2.2k
views
0
votes
4
replies
1.8k
views
updated 8 days ago by
Ram
43k
•
written 4.8 years ago by
jperezboza
▴
20
1
vote
4
replies
1.3k
views
1
vote
4
replies
280
views
updated 24 days ago by
BioinfGuru
★
1.7k
•
written 25 days ago by
Netanel
•
0
0
votes
4
replies
577
views
1
vote
4
replies
389
views
updated 13 days ago by
BioinfGuru
★
1.7k
•
written 14 days ago by
Morteza
•
0
3
votes
4
replies
353
views
23 days ago by
Estevão
•
0
2
votes
4
replies
303
views
0
votes
4
replies
501
views
8 days ago by
feather-W
•
0
4
votes
4
replies
359
views
23 days ago by
newuser2024
•
0
0
votes
4
replies
402
views
0
votes
4
replies
275
views
16 days ago by
njornet
▴
20
0
votes
4
replies
332
views
2
votes
4
replies
316
views
9 days ago by
kirill.zaslavsky
•
0
2
votes
4
replies
261
views
1
vote
4
replies
2.8k
views
updated 8 days ago by
Ram
43k
•
written 5.1 years ago by
grant.hovhannisyan
★
2.6k
2
votes
4
replies
2.6k
views
updated 16 days ago by
Ram
43k
•
written 8.1 years ago by
Chris Gene
▴
80
2
votes
4
replies
292
views
15 days ago by
synat.keam
▴
100
1
vote
4
replies
365
views
updated 20 days ago by
Ram
43k
•
written 12 weeks ago by
shwetamgr1
▴
10
0
votes
3
replies
217
views
updated 21 days ago by
Ram
43k
•
written 22 days ago by
atharvakarkare14
▴
10
0
votes
3
replies
1.1k
views
Recent Votes
Recent Locations •
All
Milan, Italy, just now
United States, just now
Australia, just now
Brazil, 1 minute ago
France, 1 minute ago
Italy, 1 minute ago
Japan, 2 minutes ago
Recent Awards •
All
Supporter to
Jalil Sharif
▴
80
Popular Question to
sil_bioinfo
▴
40
Popular Question to
sapuizait
▴
10
Popular Question to
zdiazmar
▴
30
Popular Question to
hkarakurt
▴
180
Recent Replies
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \
-a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \
-b <(awk '{X=250000;P=int($2);printf("%s\t…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴
10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴
10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Comment: genome assembly records not present in assembly_summary.txt
by
GenoMax
141k
Can you clarify what `metainfo` you are referring to?
The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Comment: what is the purpose of indexing the reference genome (Kallisto)
by
i.sudbery
19k
Specifically:
If we want to look up all the places where a 31mer is in a genome without and index, we have to compare that 31 to the first…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
benformatics
3.9k
This is way easier to do solely in R now 10 years later.
library(GenomicFeatures)
library(rtracklayer)
## import GTF…
Answer: what is the purpose of indexing the reference genome (Kallisto)
by
dsull
★
5.8k
I'll see if I can explain things in super simple terms (albeit with some abuse of the actual technical details) to provide a conceptual und…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
Jalil Sharif
▴
80
The updated code in R using rtracklayer for reading a gtf file.
https://github.com/jalilsharif/gtf_utr_fix_r/blob/main/gencode_utr_fix_d…
Comment: Rare Disease Variant Pathway Analysis
by
The_PyPanda
▴
10
Thank you LauferVA,
Your advice has been useful and I now a lot to think about and read.
Also, I just wanted to clarify I do not ha…
Comment: CDS vs cDNA vs transcript for mapping RNA-Seq reads
by
Antonio R. Franco
★
5.1k
You cannot do it with Kallisto either. In fact, the indexation will fail in attempting to index a genome file
Comment: PCA plot
by
ATpoint
82k
What is your question? Add details and clarity. Ask a precise question and please avoid opening more questions on the same underlying issue…
Comment: genome assembly records not present in assembly_summary.txt
by
Joe
21k
If you have the accession numbers can you not use something like `eutils`?
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> Next, I tried using bedtools window
but in your original post you said
> tried finding the intersection of these bed files using bedto…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
Lada
▴
30
Thank you very much! I tried it out! This is a handy tool useful for many different applications, and in regards to my problem - although …
Traffic: 3170 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6