0
votes
0
replies
193
views
0
votes
0
replies
182
views
4
votes
13
replies
869
views
updated 10 days ago by
BioinfGuru
★
1.7k
•
written 16 days ago by
matteo.levorato
•
0
2
votes
1
reply
250
views
0
votes
2
replies
284
views
updated 14 days ago by
Zhenyu Zhang
★
1.2k
•
written 15 days ago by
Apollonia
•
0
1
vote
1
reply
247
views
0
votes
0
replies
184
views
0
votes
0
replies
189
views
15 days ago by
Mary
•
0
0
votes
0
replies
182
views
15 days ago by
marco.barr
▴
80
1
vote
4
replies
392
views
updated 14 days ago by
BioinfGuru
★
1.7k
•
written 15 days ago by
Morteza
•
0
3
votes
1
reply
264
views
0
votes
0
replies
171
views
0
votes
0
replies
161
views
2
votes
2
replies
275
views
updated 15 days ago by
ATpoint
82k
•
written 16 days ago by
Shicheng Guo
★
9.4k
1
vote
0
replies
158
views
0
votes
3
replies
322
views
0
votes
4
replies
317
views
0
votes
2
replies
267
views
15 days ago by
rajasekargutha
▴
60
0
votes
3
replies
264
views
1
vote
0
replies
156
views
0
votes
0
replies
107
views
1
vote
3
replies
280
views
updated 15 days ago by
dthorbur
★
1.9k
•
written 16 days ago by
maevalefeuvre
•
0
0
votes
1
reply
165
views
0
votes
0
replies
109
views
16 days ago by
JirMan
▴
20
1
vote
1
reply
175
views
0
votes
0
replies
399
views
0
votes
0
replies
108
views
16 days ago by
AshleeThomson
▴
80
0
votes
0
replies
114
views
updated 16 days ago by
Ram
43k
•
written 16 days ago by
Lissa Cruz Saavedra
•
0
0
votes
1
reply
186
views
updated 16 days ago by
Pierre Lindenbaum
161k
•
written 16 days ago by
Saran
▴
50
0
votes
2
replies
274
views
0
votes
0
replies
162
views
updated 16 days ago by
Ram
43k
•
written 16 days ago by
ramin.k2013
•
0
0
votes
1
reply
173
views
updated 16 days ago by
Pierre Lindenbaum
161k
•
written 16 days ago by
sainavyav22
•
0
0
votes
9
replies
589
views
0
votes
0
replies
97
views
0
votes
2
replies
196
views
0
votes
1
reply
154
views
1
vote
2
replies
221
views
2
votes
4
replies
401
views
updated 17 days ago by
GenoMax
141k
•
written 18 days ago by
pl.terzian
•
0
0
votes
0
replies
121
views
0
votes
0
replies
103
views
0
votes
2
replies
222
views
15 days ago by
marongiu.luigi
▴
710
0
votes
8
replies
5.3k
views
8 follow
0
votes
0
replies
103
views
1
vote
4
replies
815
views
2
votes
4
replies
296
views
17 days ago by
synat.keam
▴
100
0
votes
0
replies
102
views
17 days ago by
Roy
▴
10
0
votes
0
replies
192
views
0
votes
5
replies
403
views
0
votes
0
replies
105
views
18 days ago by
_quantum_girl_
▴
10
0
votes
2
replies
248
views
Recent Votes
Recent Locations •
All
Europe, 6 minutes ago
Machhagan, 20 minutes ago
Whitefish, MT, 23 minutes ago
United States, 25 minutes ago
Dublin, Ireland, 27 minutes ago
Germany, 31 minutes ago
United States, 32 minutes ago
Recent Awards •
All
Popular Question to
rohitsatyam102
▴
850
Popular Question to
candron
▴
10
Scholar to
Alex Reynolds
35k
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Recent Replies
Comment: gvcf joint calling
by
Jeremy Leipzig
22k
can you show us an exonic position in your VCF file that is all `./.`?
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
by
O.rka
▴
710
Thank you. This answers my question. The reason I am asking is because I’m trying to do set enrichment analysis with BRENDA pathways using…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
by
colindaven
6.4k
I used to use nextflow in a conda env. That requires the env to be active when a pipeline is started. Also I have productive pipelines whic…
Comment: different FeatureCounts output for the same data
by
Istvan Albert
100k
just to clarify, it is not that the program algorithm works differently but the meaning of the flags changed;
before -p was sufficient to…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★
1.7k
Thanks Ram. Using merge maxed out my ram on a large list, but your suggestion directed me to purrr::reduce which works great.
Comment: ScRNA data question
by
starswillfade
▴
10
features <- SelectIntegrationFeatures(object.list = merged_dat)
data.anchors <- FindIntegrationAnchors(object.list = merged_dat,
…
Comment: gvcf joint calling
by
zihanss
•
0
Thank you for your help! I really appreciate it!
And you know, the merged WES gVCF files still have "NA" loci. For such cases, I am quite …
Comment: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Guille
•
0
Thank you for your answer!
The MDS plot seems to group most treatment groups close-by, so I'm starting to suspect the effect of treatment …
Answer: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
by
Mensur Dlakic
★
27k
They say that we remember better things we figured out on our own, rather than things we were taught. You were literally two clicks away fr…
Comment: Heatmap and rna-seq
by
dsull
★
5.8k
https://maayanlab.cloud/clustergrammer/
It's a web-based tool (can also be a python jupyter widget) that I find useful for exploring a pat…
Answer: Limma Analysis Agilent Microarray Data (GPL1708)
by
Gordon Smyth
★
7.0k
There is an Agilent array case study in the limma User's Guide, which you might find helpful and somewhat simpler.
I don't recommend col…
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Gordon Smyth
★
7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1.
Have you exam…
Answer: How to use limma to find differentially expressed genes in response to a continu
by
Gordon Smyth
★
7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Thank you Pierre! I'll try this out with my full data set.
Traffic: 1741 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6