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377 results • Page
5 of 8
Sort: Votes
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Views
Votes
Replies
0
votes
0
replies
102
views
How to get somatic variation based on RNA-seq data?
RNA-seq
variation
somatic
24 days ago by
feather-W
• 0
0
votes
0
replies
101
views
monocle 3-- Could not get node in small cluster
monocle3
9 days ago by
synat.keam
▴ 100
0
votes
1
reply
216
views
When should I use R-MarkDown over R-Script ?
r
rscript
rmarkdown
updated 6 days ago by
ATpoint
82k • written 6 days ago by
Amr
▴ 160
0
votes
0
replies
143
views
vcf procesing for ML antigen prediction
formats
vcf
fastaq
HLA_imputation
HLA_typing
13 days ago by
Javier
• 0
0
votes
2
replies
462
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
27 days ago by
Ashok
• 0
0
votes
0
replies
120
views
The concept of co-occurrence network structure
co-occurence
microbiome
network
23 days ago by
ohtang7
▴ 40
0
votes
0
replies
123
views
LEfSe
LEfSe
17 days ago by
benkosta
• 0
0
votes
2
replies
420
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
28 days ago by
Ashok
• 0
0
votes
1
reply
535
views
GAPIT p-value significance threshold
GAPIT
p-value
GWAS
updated 21 days ago by
ginellegrenier
• 0 • written 5 months ago by
Clayton
• 0
0
votes
0
replies
1.2k
views
Batch estimate using kBET
batch-effect
kbet
updated 28 days ago by
Ram
43k • written 4.1 years ago by
getanid123
• 0
0
votes
0
replies
135
views
Modify plot R mtDNA indel
plot
mtDNA
R
13 days ago by
marco.barr
▴ 120
0
votes
0
replies
163
views
Marker Features variance by cluster, sample, and treatment group
Seurat
scATAC-seq
ArchR
updated 6 days ago by
Ram
43k • written 6 days ago by
naomiboldon
• 0
0
votes
0
replies
225
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 27 days ago by
Ram
43k • written 27 days ago by
Dinmukhamed
• 0
0
votes
0
replies
93
views
NEURON, Brian2, NEST, or PyNN
NEST
NEURON
PyNN
Brian2
2 days ago by
brunofelicianodeomena
• 0
0
votes
0
replies
108
views
meffil.snp.concordance
meffil
methylation
snp_concordance
9 days ago by
kyj222637
• 0
0
votes
0
replies
113
views
Analysis of the gene family of a genome.
Genome
gene-family
updated 24 days ago by
Ram
43k • written 24 days ago by
sansan_96
▴ 90
0
votes
0
replies
191
views
Running Phylogenetic Analysis With NCBI Genome
population-genetics
phylogenetic
updated 20 days ago by
Ram
43k • written 20 days ago by
SineWave
• 0
0
votes
2
replies
270
views
fastq screen aligner no specified.
BWA
Bowtie2
FastqScreen
updated 6 days ago by
GenoMax
142k • written 13 days ago by
Ximena
• 0
0
votes
3
replies
314
views
KEGG Pathways
r
RNA-seq
updated 16 days ago by
Ram
43k • written 16 days ago by
Sudip
• 0
0
votes
1
reply
209
views
Plot DNA methylation level of DMR on the basis of certain genes
rrbs
methylkit
updated 23 days ago by
GenoMax
142k • written 23 days ago by
Srinka
▴ 20
0
votes
0
replies
99
views
Annotating single cell data automatically
cell
annotation
single
24 days ago by
Gerard
• 0
0
votes
4
replies
577
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
28 days ago by
feather-W
• 0
0
votes
0
replies
145
views
Chance for trained without experience
bio
updated 8 days ago by
ATpoint
82k • written 8 days ago by
shehab
• 0
0
votes
0
replies
133
views
Synteny analysis
bacterial
synteny
genome
updated 17 days ago by
GenoMax
142k • written 17 days ago by
Namil
• 0
0
votes
0
replies
97
views
Filtering most similarly expressed gene (contrary to differential expression gene) with NOISeq?
NOIseq
23 days ago by
alifafiq1
• 0
0
votes
1
reply
173
views
Provean help
variant
Provean
updated 14 days ago by
Mensur Dlakic
★ 27k • written 14 days ago by
Arun Sai Kumar
• 0
0
votes
2
replies
162
views
perseus software (version 1.5.5)
preseus
mass
spectrometry
data
updated 16 hours ago by
DGTool
▴ 20 • written 1 day ago by
iqra
• 0
0
votes
2
replies
300
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
29 days ago by
mropri
▴ 150
0
votes
1
reply
191
views
Microbial Signal Transduction Database
MiST
updated 6 days ago by
zx8754
11k • written 6 days ago by
Shravani
• 0
0
votes
0
replies
219
views
Lncipedia GTF file error
Proteomics
updated 27 days ago by
Ram
43k • written 27 days ago by
atharvakarkare14
▴ 30
0
votes
0
replies
156
views
STAR total splices (in Log.final) vs collapsed splice junctions (in SJ.out.tab)
STAR
19 days ago by
tnminh89
▴ 10
0
votes
0
replies
1.5k
views
RIPSeeker viewRIP function fails to extract values() in GRangesList/S4 object
RIPSeq
S4
RIP
R
updated 29 days ago by
Ram
43k • written 6.2 years ago by
CrisMar
▴ 80
0
votes
1
reply
202
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 15 days ago by
i.sudbery
19k • written 16 days ago by
Edmond
• 0
0
votes
2
replies
174
views
Is it necessary to do genotype quality filteration after snp calling with GATK
snp
filteration
genotype
quality
GATK
2 days ago by
IdaHao0921
• 0
0
votes
0
replies
121
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
10 days ago by
Scott McKay
▴ 30
0
votes
0
replies
126
views
Software to calculate RSCU, ENC other than codonw
rscu
codonw
updated 23 days ago by
Ram
43k • written 23 days ago by
SHREYA
• 0
0
votes
0
replies
92
views
Correct way of reducing predictive model complexity
lasso
glmnet
predictvemodeling
regression
24 days ago by
sativus
▴ 20
0
votes
2
replies
594
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
28 days ago by
航太郎
• 0
0
votes
0
replies
128
views
Pairwise alignment and Ka/Ks computation
Pairwise-Alignment
Genomics
Ka-Ks
updated 24 days ago by
Ram
43k • written 24 days ago by
maxime.policarpo
▴ 200
0
votes
1
reply
187
views
Alignment of samples with spike-in
alignment
multimapping
RNA-seq
ChIP-seq
spike-in
updated 6 days ago by
GenoMax
142k • written 6 days ago by
maria.soler
• 0
0
votes
0
replies
134
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 15 days ago by
Ram
43k • written 15 days ago by
Oscar
▴ 10
0
votes
1
reply
189
views
How to solve this RoseTTAFold colaboratory error?
modeling
Google
Colaboratory
RoseTTAFold
protein
updated 22 days ago by
Mensur Dlakic
★ 27k • written 23 days ago by
benguyarenbeyaz98
• 0
0
votes
1
reply
78
views
API kegg - IndexError: list index out of range
kegg
API
updated 13 minutes ago by
Nyksubuz
▴ 10 • written 18 hours ago by
mirwa.zidi93
• 0
0
votes
2
replies
1.0k
views
proportional hazard assumption was not satisfied for a covariate
hazard-ratios
Cox-model
survival
updated 29 days ago by
Ram
43k • written 4.4 years ago by
akutasame
▴ 40
0
votes
0
replies
91
views
In what situations is 'outer' typically used when using anndata.concat()?
concat
anndata
scanpy
2 days ago by
Spring
• 0
0
votes
0
replies
187
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 29 days ago by
GenoMax
142k • written 29 days ago by
srimmer
• 0
0
votes
1
reply
2.8k
views
Can't make sva comparison despite very distinct batch effects
sva
batch-effect
updated 29 days ago by
Ram
43k • written 6.2 years ago by
jjrin
▴ 40
0
votes
0
replies
96
views
Difficulties getting **the adjacency file** necessary for **aracne2regulon** function.
VIPER
MARINA
ARACNe
24 days ago by
Biostars2200
• 0
0
votes
2
replies
587
views
autodockvina
python
python3
autodock
updated 28 days ago by
Ram
43k • written 4 months ago by
iamsmor
• 0
0
votes
2
replies
355
views
How to update R on ubuntu
installation
update
R
apt-get
17 days ago by
Bosberg
▴ 50
377 results • Page
5 of 8
Recent Votes
Forward And Reverse Strand Conventions
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Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
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Comment: API kegg - IndexError: list index out of range
by
Nyksubuz
▴ 10
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem
by
saifulislam99121
• 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
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by
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▴ 520
It seems that Alexandrov's [structural variant and copy number signatures][1] estimated by the [SigProfiler software ecosystem][2] aren't c…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
GenoMax
142k
Then you may want to see if a program like `lastz` ([**LINK**][1]) may be useful. [1]: https://github.com/lastz/lastz
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by
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43k
What is the purpose of this tool? I have `~/bin` in my $PATH and I soft-link all executables I need to that location so why install a new t…
Comment: Merge clusters in Seurat UMAP
by
bk11
★ 2.4k
Can you try this? library(dplyr) seuratobj@meta.data <- seuratobj@meta.data %>% mutate(seurat_clusters = recode(seurat_clu…
Comment: Merge clusters in Seurat UMAP
by
kilcdincer
▴ 10
Thank you for the response but it does not change anything.
Comment: Merge clusters in Seurat UMAP
by
bk11
★ 2.4k
I have not tested but you could try something like below- seuratobj$seurat_clusters[seuratobj$seurat_clusters==5]=0 seuratobj$seur…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★ 2.9k
I know about it, isn't there a simple C++ static binary?
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★ 2.9k
needle is great! but it does not handle sequences of 100k or so.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
Ram
43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
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The point is that you need to feed the ambient algorithm a clustering list as input. This way, it checks for genes present in the soup vs g…
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Wait, so the magnitudes of the PCs are in the thousands? That's not normal for RNASeq.
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Jordan M Eizenga
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What do you get if you use `vg stats -a` on the GAM file?
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sansan_96
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Hello, What approach could you recommend for a large genome (3Gb) with about 10k scaffolds? I'm having problems with RAM when processing t…
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