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737 results • Page
1 of 15
Sort: Rank
Rank
Views
Votes
Replies
2
votes
0
replies
168
views
Tool:
Sequence alignment on split read event such as inversion, duplication and complex nested events.
minimap
alignment
NGMLR
1 day ago by
micah
▴ 30
4
votes
5
replies
4.4k
views
Tool:
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Assembly
Structural-Variation
Variant-Calling
updated 3 days ago by
dario.garvan
▴ 520 • written 7.2 years ago by
d-cameron
★ 2.9k
1
vote
3
replies
289
views
Tool:
Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
Minutes
Decimal
offtopic
Degrees
python
updated 3 days ago by
Ram
43k • written 5 days ago by
kuttibiotech2009
▴ 30
1
vote
1
reply
197
views
Tool:
Collect dispersed executable files and run them by using bingo.
bingo
updated 3 days ago by
Ram
43k • written 4 days ago by
dwpeng
▴ 10
1
vote
1
reply
251
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 13 days ago by
Michael
54k • written 14 days ago by
Guillermo
• 0
4
votes
9
replies
2.7k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
RNA-Seq
written 8.3 years ago by
dvelmeshev
• 0
2
votes
0
replies
211
views
Tool:
pySEACR
Peak-Calling
CUT-and-RUN
5 weeks ago by
Adam
▴ 30
2
votes
3
replies
510
views
Tool:
DEGap - an online tool for Differential Gene Expression analysis
degap
5 weeks ago by
Anastasia
▴ 10
2
votes
1
reply
375
views
Tool:
TGSFilter, An ultra-fast and efficient tool for long reads filtering and trimming
genome-assembly
filtering
reads
trimming
updated 8 weeks ago by
Yingzi
• 0 • written 8 weeks ago by
Huiyang
▴ 190
0
votes
0
replies
239
views
Tool:
MicrobiomePhylo: A Comprehensive Platform for Advanced Microbiome Amplicon Sequencing Data Analysis and Visualization
microbiome
analysis
data
16S
8 weeks ago by
camillatafuro
• 0
85
votes
46
replies
9.3k
views
15 follow
Tool:
ChatGPT optimized for bioinformatics questions
gpt
updated 9 weeks ago by
LauferVA
4.2k • written 11 months ago by
Sasha
▴ 850
5
votes
2
replies
2.5k
views
Tool:
Coovar: Co-Occurring Variant Analyzer
snp
variant-annotation
updated 10 weeks ago by
GenoMax
142k • written 11.6 years ago by
Christian
★ 3.0k
1
vote
4
replies
437
views
Tool:
A c library for reading and writing sequences in fasta and fastq format.
seqio
10 weeks ago by
dwpeng
▴ 10
1
vote
0
replies
254
views
Tool:
HFKReads, an ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
kmer
organelle
metagenomic
assembly
12 weeks ago by
Huiyang
▴ 190
0
votes
0
replies
294
views
Tool:
Microbiome Analysis: Comprehensive 16S Meta-barcoding Analysis in R with Phyloseq - On Sale Now!
R
microbiome
16S
phyloseq
analysis
11 weeks ago by
camillatafuro
• 0
0
votes
0
replies
180
views
Tool:
Annotating the epitope-specificity of TCRs with bioinformatics
Annotation
TCR
Epitope-specificity
3 months ago by
tim
• 0
10
votes
12
replies
1.9k
views
Tool:
PanDepth, an ultra-fast and efficient genomic tool for coverage calculation
bam
paf
depth
cram
coverage
3 months ago by
Huiyang
▴ 190
1
vote
0
replies
275
views
Tool:
gxf2bed: A high-performance GTF/GFF-to-BED converter written in Rust
convert
gff
gtf
bed
3 months ago by
alejandrogzi
▴ 120
3
votes
8
replies
742
views
Tool:
Generate unit-tested, ready-to-run pipelines using natural language prompting
NGS
pipeline
genomics
cloud
AI
updated 3 months ago by
Ram
43k • written 3 months ago by
Kevin
▴ 50
3
votes
0
replies
240
views
Tool:
GW: fast genome browser and variant exploration tool
genome
genomics
variant-annotation
genome-browser
visualization
3 months ago by
clealk
▴ 50
1
vote
0
replies
226
views
Tool:
BIRCH3.90 - BioLegato, Apple Silicon, Updates
genomics
sequence
transcriptomics
3 months ago by
brian.fristensky
▴ 460
0
votes
0
replies
217
views
Tool:
Get `BPCells` with Bioconductor workflow
single
cell
BPCells
3 months ago by
Yun
• 0
1
vote
3
replies
687
views
Tool:
retroSeeker: discovering a large set of retrotransposons in humans and any species
Mobile-element
Evolution
Retrotransposon
4 months ago by
lsp03yjh
▴ 860
1
vote
0
replies
289
views
Tool:
tinybio in OpenAI App Store
gpt
4 months ago by
Sasha
▴ 850
0
votes
0
replies
873
views
Tool:
What do you think about Tfinder? a tool to find individual motifs in DNA sequence. Help us ameliorate
Motifs
Transcription-factor
updated 5 months ago by
Ram
43k • written 5 months ago by
Naima
• 0
0
votes
2
replies
418
views
Tool:
Dot_plot_like_in_BLAST, a standalone tool for making dot plots similar to what online BLAST makes
Megablast
Blastn
dot
plot
dotplot
BLAST
updated 5 months ago by
Ram
43k • written 5 months ago by
shelkmike
★ 1.2k
1
vote
0
replies
253
views
Tool:
De Novo assembler (in C, supports MPI parallelism) available for experimenting with
de-novo
trie
olc
updated 5 months ago by
Ram
43k • written 5 months ago by
Graham
▴ 10
4
votes
0
replies
477
views
Tool:
NOEL: An extremely fast Non-Overlapping Exon Length calculator written in Rust
gene-annotation
exon-length
5 months ago by
alejandrogzi
▴ 120
9
votes
4
replies
2.3k
views
Tool:
SEDA (SEquence DAtaset builder): a desktop tool for processing FASTA files containing DNA and protein sequences
fasta
sequences
java
5 months ago by
Hugo
▴ 380
0
votes
0
replies
549
views
Tool:
deepBreaks: a machine learning tool for identifying and prioritizing genotype-phenotype associations
python
genetics
updated 6 months ago by
Ram
43k • written 6 months ago by
Mahdi
• 0
1
vote
1
reply
408
views
Tool:
Coremine Medical Introduction - connect - discover - share | explore and visualize associations
drug-target
drug
gene
updated 6 months ago by
Ram
43k • written 6 months ago by
Coremine Medical
▴ 20
0
votes
0
replies
247
views
Tool:
massSight: A tool to combine LC-MS datasets
qc
metabolomics
omics
R
lc-ms
6 months ago by
Chiraag
• 0
0
votes
0
replies
284
views
Tool:
Coremine Medical used in study to discover differentially expressed genes in multiple sclerosis
drugs
drug-targets
genes
6 months ago by
Coremine Medical
▴ 20
0
votes
0
replies
324
views
Tool:
Introducing SpectraView - a tool to transform your literature reviews!
gene
protein
drug-discovery
updated 7 months ago by
Ram
43k • written 7 months ago by
DrugDiscoveryTech
• 0
4
votes
0
replies
397
views
Tool:
MyBrain-Seq: A Pipeline for MiRNA-Seq Data Analysis in Neuropsychiatric Disorders
mybrain-seq
miRNA-seq
pipeline
neuropsychiatry
docker
7 months ago by
dannyzimm
▴ 50
12
votes
4
replies
1.1k
views
Tool:
BBTools 39.03 released!
BBTools
BBMap
7 months ago by
Brian Bushnell
20k
2
votes
2
replies
604
views
Tool:
Python and R without installing apps
Resources
updated 8 months ago by
jena
▴ 290 • written 8 months ago by
gallardodiazmiriam
▴ 20
0
votes
0
replies
300
views
Tool:
MTMCSKAT package for GWAS with efficient resampling, parallelization
SKAT
MTMC-SKAT
updated 8 months ago by
Ram
43k • written 8 months ago by
michael.nagle
▴ 100
11
votes
2
replies
783
views
Tool:
Pipeline Generator
gpt
updated 9 months ago by
LauferVA
4.2k • written 9 months ago by
Sasha
▴ 850
13
votes
6
replies
5.2k
views
Tool:
csvtk - a cross-platform, efficient, practical and pretty CSV/TSV toolkit
CSV
Golang
TSV
9 months ago by
shenwei356
8.5k
3
votes
1
reply
840
views
Tool:
pyGenomeViz - A genome visualization python package for comparative genomics
genome
comparative-genomics
python
microbial-genomics
visualization
updated 4 months ago by
n.s.j.vandervelden
▴ 90 • written 9 months ago by
moshi
▴ 150
9
votes
9
replies
4.7k
views
Tool:
pyCirclize - Circular visualization in Python
visualization
circos
matplotlib
genome
python
updated 9 months ago by
shuo
• 0 • written 17 months ago by
moshi
▴ 150
0
votes
2
replies
7.9k
views
Tool:
The script to install the required packages for gene expression analysis using DESeq2 for downstream analysis and visualization
R
RNAseq
installation
DESeq2
9 months ago by
Aditya naman
• 0
1
vote
0
replies
603
views
Tool:
Create realistic VCF genomic data in just a few lines of Python code
genomic
linkage
python
vcf
tool
disequilibrium
9 months ago by
Rémy
▴ 10
1
vote
2
replies
3.6k
views
Tool:
How Study Aromatic-Aromatic Interactions And Amino-Aromatic Interactions Of Protein-Ligands Complexes In The Pdb.
pdb
updated 10 months ago by
Jiyao Wang
▴ 370 • written 10.6 years ago by
bagaruwa
• 0
3
votes
2
replies
800
views
Tool:
Launched: Genozip 15 with co-compression of BAM and FASTQ
BAM
CRAM
compression
FASTQ
updated 10 months ago by
DBScan
▴ 300 • written 10 months ago by
Divon
▴ 230
0
votes
1
reply
514
views
Tool:
tinybio added sources & chat history - (ChatGPT optimized for bioinformatics questions)
gpt
updated 8 weeks ago by
Shaunak
• 0 • written 10 months ago by
Sasha
▴ 850
7
votes
4
replies
2.9k
views
Tool:
TreeView3 - An update to java TreeView
TreeView3
java
updated 9 months ago by
nach.mcnach
▴ 10 • written 5.9 years ago by
rleach
▴ 180
0
votes
0
replies
377
views
Tool:
Unleashing the Power of Custom NGS Software for Cutting-Edge Research
DNAseq
pipeline
bisulfiteSeq
RNAseq
updated 11 months ago by
rpolicastro
13k • written 11 months ago by
David Langenberger
11k
5
votes
3
replies
874
views
Tool:
Experiment Generator
gpt
updated 11 months ago by
LauferVA
4.2k • written 11 months ago by
Sasha
▴ 850
737 results • Page
1 of 15
Recent Votes
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
A: Bcftools merge taking too much time and producing large file
Answer: Kraken2 database
A: Why gene expression data should be log2 transformed?
Answer: Filter Genome for Specific Sites
Answer: Filter Genome for Specific Sites
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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Recent Awards •
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GenoMax
142k
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tothepoint
▴ 800
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safeassli
▴ 10
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Recent Replies
Comment: Add stats to the plot
by
Ghada
• 0
Thanks. Unfortunately, the code did not work :( 101010 > data4_test <- data4.ts %>% + ungroup() %>% + t.test(value ~ Condition) %>% + …
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Hello I have a quick question, I did as you said , and further added the traits, found the correlation among the modules and the traits us…
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
ojaswinipandey
• 0
Thank you so much Dave.
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
Dave Carlson
★ 1.7k
The y axis represents the proportion of the total variance explained by each principal component. It's negative because the value (between…
Comment: Error in using BioSampleParser tool: subscript out of bounds
by
marco.barr
▴ 130
Hi Mohamed, I also thought the same thing but we run the risk of inserting other errors perhaps by modifying the function. I tried but I ha…
Comment: Trimming tool
by
Ram
43k
Please do a few simple Google searches before asking others for help.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
by
Ram
43k
This post does not fit the theme of this forum.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
by
Ram
43k
Hi, Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
Comment: Kraken2 Custom Database non-deterministic results
by
GenoMax
142k
Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
Comment: How can I calculate the OS of each patient?
by
Pedro
• 0
**I have already tried this code. listSamples with HNSC cancer and smokers. I need at least one supporting material to find out the survi…
Comment: Filter Genome for Specific Sites
by
Anita
• 0
Great, thank you!
Comment: Filter Genome for Specific Sites
by
Anita
• 0
This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
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