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1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
149
views
How to calculate correlation coefficient for chipseq?
chipseq
bigwigsummary
correlation
3 days ago by
Emily
▴ 10
1
vote
0
replies
161
views
How to calculate reliable Ka/Ks or dN/dS ratio for genes of interest from VCF file
dnds
kaks
VCF
3 days ago by
rohitsatyam102
▴ 850
0
votes
0
replies
147
views
how to read graph_test output of monocle 3
monocle3
3 days ago by
synat.keam
▴ 100
0
votes
0
replies
175
views
Job:
CTO/founding engineer role at Voyant Bio
engineer
3 days ago by
Assaf
• 0
0
votes
1
reply
476
views
GAPIT p-value significance threshold
GAPIT
p-value
GWAS
updated 3 days ago by
ginellegrenier
• 0 • written 4 months ago by
Clayton
• 0
3
votes
4
replies
322
views
Why gatk VariantAnnotator required bam and coverage files
gatk
VariantAnnotator
3 days ago by
QX
• 0
2
votes
1
reply
221
views
Finding orthologs between genome error
OMA
OMAbrowser
updated 3 days ago by
Adrian Altenhoff
★ 1.1k • written 4 days ago by
hemantcnaik
• 0
0
votes
0
replies
145
views
Why not use iBAQ for calculating differential abundance of proteins?
protein
maxquant
3 days ago by
Aspire
▴ 300
2
votes
3
replies
257
views
Figures are disappeared from html report of SnpEff
HTML
SnpEff
updated 3 days ago by
Pierre Lindenbaum
161k • written 3 days ago by
analyst
▴ 30
0
votes
3
replies
275
views
Highest variable features in single cell data
single-cell
updated 2 days ago by
bk11
★ 2.4k • written 3 days ago by
Kazo
• 0
0
votes
1
reply
212
views
Network Alignment
plugin
Cytoscape
CytoMCS
updated 3 days ago by
Scooter
▴ 280 • written 4 days ago by
Akash D
▴ 40
2
votes
4
replies
2.4k
views
How could I generate a gi_taxid_nucl.dmp file similar to the one previously hosted by NCBI?
ncbi
metagenomics
centrifuge
gi_taxid_nucl.dmp
taxonomy
updated 3 days ago by
ZhangYuanfeng
• 0 • written 2.4 years ago by
Frazier Baker
• 0
1
vote
3
replies
326
views
PCA plot
DESeq2
PCAplot
updated 7 hours ago by
LauferVA
4.2k • written 3 days ago by
Aaliya
▴ 10
4
votes
4
replies
390
views
Tutorial:
how to combine multiple RNAseq count files into a single dataframe in R and unix
Unix
RNAseq
R
updated 1 day ago by
BioinfGuru
★ 1.7k • written 3 days ago by
Ming Tommy Tang
★ 3.9k
0
votes
4
replies
2.7k
views
Lositan freezing when generating selection table
LOSITAN
updated 4 days ago by
evawillms183
• 0 • written 8.3 years ago by
andrepleao
• 0
0
votes
0
replies
144
views
Can you give me an example of a small globular protein (PDB) that has disordered alpha-carbons?
protein
pdb
alpha-carbon
4 days ago by
4fzcgueyp5
• 0
2
votes
3
replies
316
views
clustalo - align milions of short seq, memory issue
memory
clustalo
updated 6 days ago by
Mensur Dlakic
★ 27k • written 6 days ago by
emmanouil.a
▴ 120
0
votes
2
replies
243
views
Annovar using R package
Annovar
gnomAD
R
3 days ago by
DKA
▴ 40
0
votes
2
replies
222
views
Creating Synthetic Sequences for a ML Model
DNA
ML
updated 4 days ago by
Mensur Dlakic
★ 27k • written 4 days ago by
biochugs
• 0
8
votes
8
replies
586
views
PCA plot (Suggestions Needed)
DESeq2
PCAplot
updated 3 days ago by
swbarnes2
14k • written 4 days ago by
Aaliya
▴ 10
1
vote
8
replies
809
views
Adding CB tag to bam file
samtools
bam
updated 3 days ago by
Pierre Lindenbaum
161k • written 10 days ago by
Maria
• 0
1
vote
10
replies
942
views
Troubleshooting RNA-seq data with DNA contamination
RNA-seq
DESeq2
DNA-contamination
4 days ago by
DKA
▴ 40
0
votes
2
replies
813
views
AGeNT LocatIt
AGeNT
LocatIt
WES
UMI
duplicates
updated 4 days ago by
barslmn
★ 2.1k • written 2.8 years ago by
jhy
▴ 10
0
votes
5
replies
330
views
Is it possible to get a list of representative genomes from a past RefSeq release?
representative
ncbi
asembly
refseq
updated 3 days ago by
GenoMax
141k • written 4 days ago by
Bertalan_Takacs
▴ 90
0
votes
0
replies
136
views
One error problem occurred caused by data type during using GDCprepare to handle BRCA data
TCGA
GDCprepare
updated 4 days ago by
Ram
43k • written 4 days ago by
glaciya2018
• 0
0
votes
0
replies
118
views
News:
8th Berlin Summer School in NGS Data Analysis - Apply Now
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
updated 3 days ago by
Ram
43k • written 4 days ago by
David Langenberger
11k
0
votes
0
replies
298
views
roary not working with pgap output gff files with fasta sequence but works with prokka's gff outputs
pangenome
PGAP
NCBI
roary
Prokka
4 days ago by
pramach1
▴ 40
0
votes
13
replies
3.5k
views
6 follow
Tax4Fun2 - error
tax4fun
silva
blast
updated 4 days ago by
drstalinantony28
• 0 • written 2.2 years ago by
ymj
▴ 10
0
votes
1
reply
150
views
GEMMA GWAS how to specify factor or numerical for covariates
covariate
GEMMA
GWAS
updated 4 days ago by
Sofia
• 0 • written 4 days ago by
mawigoj318
• 0
0
votes
0
replies
139
views
Sequence BLAST in plus/minus and plus/plus
blast
CRISPR
strand
sequencing
4 days ago by
salias
• 0
4
votes
7
replies
463
views
To get p-values for the TPM
P-value
TPM
RSEM
updated 3 days ago by
dsull
★ 5.9k • written 4 days ago by
VITALA
• 0
0
votes
5
replies
327
views
different FeatureCounts output for the same data
fpkm
Counts
Rsubread
rna-seq
updated 1 day ago by
Istvan Albert
100k • written 4 days ago by
sehriban.buyukkilic
▴ 10
0
votes
0
replies
119
views
Alternative splicing analysis using SUPPA tool - how to normalise counts?
rna-seq
single-cell
suppa
alternative-splicing
updated 4 days ago by
Ram
43k • written 4 days ago by
newuser2024
• 0
1
vote
2
replies
222
views
alignment result
RNA-seq
samtools
hisat2
3 days ago by
ahmad.sajad4541
• 0
0
votes
0
replies
115
views
News:
hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models
GLM
R
updated 4 days ago by
Ram
43k • written 4 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
102
views
Is result interpretation of the modelHomotypic function of the DoubletFinder correct?
doublet
DoubletFinder
Seurat
modelHomotypic
updated 4 days ago by
Ram
43k • written 4 days ago by
Jeyong
• 0
0
votes
2
replies
229
views
Wilcox test using data slot (log normalized count values) of scRNA-seq between two groups
scRNAseq
4 days ago by
mropri
▴ 150
2
votes
2
replies
221
views
HaplotypeCaller - only SNPs
HaplotypeCaller
GATK
updated 4 days ago by
analyst
▴ 30 • written 5 days ago by
lorena9132
• 0
0
votes
0
replies
110
views
AttributeError: module 'scvelo' has no attribute 'pp
loomfile
scvelo
scipy
annData
numpy
5 days ago by
Kash
▴ 110
7
votes
2
replies
273
views
Gene set enrichment analysis differences between 2020 and 2024
Gene-ontology
updated 5 days ago by
geneontologyhelp
▴ 390 • written 6 days ago by
catherine.teyssier
• 0
1
vote
1
reply
212
views
Blasting two protein sequences vs two nucleotide sequences
gene-hunting
blast
updated 5 days ago by
Istvan Albert
100k • written 6 days ago by
Abeer
• 0
2
votes
4
replies
312
views
Should I use unpaired reads from trimmomatic
RNA-seq
QC
Trimmomatic
updated 5 days ago by
swbarnes2
14k • written 6 days ago by
dxj294
• 0
0
votes
1
reply
154
views
How to solve this RoseTTAFold colaboratory error?
modeling
Google
Colaboratory
RoseTTAFold
protein
updated 4 days ago by
Mensur Dlakic
★ 27k • written 5 days ago by
benguyarenbeyaz98
• 0
0
votes
2
replies
251
views
How to calculate identity percentage between proteins contained in a FASTA file?
protein
FASTA
alignment
updated 4 days ago by
Ram
43k • written 5 days ago by
v.berriosfarias
▴ 140
3
votes
1
reply
225
views
Seurat merge and batch correction
Seurat
updated 5 days ago by
Ram
43k • written 5 days ago by
sooni
▴ 20
1
vote
1
reply
197
views
Herald:
The Biostar Herald for Tuesday, April 23, 2024
herald
updated 5 days ago by
Pierre Lindenbaum
161k • written 5 days ago by
Biostar
2.7k
1
vote
1
reply
152
views
Including plasmid in transcriptome assemblies
Bacteria
BOWTIE2
Transcriptomics
STAR
updated 5 days ago by
GenoMax
141k • written 5 days ago by
heelpPlease
• 0
2
votes
9
replies
846
views
TCGA2STAT Error: Firehose connection
FIREHOSE
TCGA
updated 5 days ago by
LauferVA
4.2k • written 6 months ago by
Gnana
• 0
0
votes
11
replies
524
views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
STARSolo
scRNA-seq
STAR
snRNA-seq
MGI
3 days ago by
atowns21
• 0
0
votes
1
reply
161
views
Find subcluster under a cluster, find differential genes in one cluster between 2 samples??
clustering
subclustering
scRNAseq
updated 5 days ago by
bk11
★ 2.4k • written 5 days ago by
alphaflylizard
• 0
1,000 results • Page
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Comment: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
A: Hard time trying to calculate Allele Frequency and DP from Platypus
Answer: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
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Comment: NGS forensics: how to know if data is fabricated
by
Philipp Bayer
8.4k
i've been in our org trying to push such a detector, our use-case is much more limited: I want to make simulated eDNA libraries as real as …
Answer: Differential Expression using Isoseq-supplemented reference transcriptome
by
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> What is the best method to test for differential abundance at the isoform level? Salmon returns TPM values instead of the counts which Li…
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Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Can you post an IGV screenshot of what this looks like?
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Yeah some of the Illumina machines pre-trim adapters (not sure if this is still the standard). I've also definitely also seen quality-trimm…
Comment: PDB related issue
by
noodle
▴ 540
You can typically find much more useful info in the cif file, for example what you've found is called '_atom_site.pdbx_PDB_ins_code ' and d…
Comment: PDB related issue
by
Mensur Dlakic
★ 27k
The best way to find out is to read the original paper. My guess is that the residue has been crystallized in alternative conformations, wh…
Answer: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★ 27k
I share the opinion by @philippbayer I have seen enough questionable things in life and in science to keep me permanently jaded, but there…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I downloaded the data in two files from the link you provided. With this command: megahit -1 ERR072246_1.fastq.gz -2 ERR072246_2.fastq…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
If you have Linux the assembly should work on your system, but 8 GB is generally not enough for assembling larger genomes.
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I think you might be getting stuck on less relevant parts of my exercise. The most important point was that nothing is wrong with the data.…
Comment: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
Great comprehensive explanation and overview of the technologies -- with regards to sequencing assays, the one thing I'd add is SNV identif…
Answer: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
I think that term means slightly different things in different contexts. For example, it's useful to profile mRNA modifications (e.g. m6a) …
Comment: Cannot process all the reads in a fast5 file?
by
chujie
• 0
Hi, I met the same problem, have you found the solution?
Answer: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
Hi @fe3e6f65 , In a single sentence, the answer to your question can be summarized as, "*the resolution of a genomic technology refers to …
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