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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.7k • written 7.4 years ago by 100k
0
votes
0
replies
57
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 10 hours ago by 43k • written 14 hours ago by ★ 2.5k
0
votes
0
replies
105
views
News: 8th Berlin Summer School in NGS Data Analysis - Apply Now
DNA-seq variant-calling RNA-seq illumina transcriptomics
updated 10 hours ago by 43k • written 1 day ago by 11k
0
votes
0
replies
106
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
3
votes
0
replies
112
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 2 days ago by 43k • written 2 days ago by ★ 2.5k
0
votes
0
replies
81
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
3 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
130
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 4 days ago by 43k • written 5 days ago by ★ 2.5k
0
votes
0
replies
188
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 7 days ago by 43k • written 7 days ago by ★ 2.5k
0
votes
0
replies
175
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 7 days ago by 43k • written 7 days ago by ★ 2.5k
0
votes
0
replies
172
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 9 days ago by 43k • written 9 days ago by 11k
0
votes
0
replies
142
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 10 days ago by 43k • written 10 days ago by ▴ 380
0
votes
0
replies
177
views
News: Online course: Network Analysis in R
NetworkAnalyis R
11 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
183
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 14 days ago by 43k • written 14 days ago by ★ 2.5k
1
vote
0
replies
127
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 14 days ago by 43k • written 14 days ago by ▴ 70
2
votes
0
replies
123
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 14 days ago by 43k • written 14 days ago by ▴ 70
2
votes
0
replies
122
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 14 days ago by 43k • written 14 days ago by ▴ 70
2
votes
0
replies
114
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
15 days ago by Transmitting Science communication ▴ 70
12
votes
2
replies
443
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
15 days ago by David Langenberger 11k
2
votes
0
replies
115
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 16 days ago by 43k • written 16 days ago by ★ 2.5k
0
votes
0
replies
118
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 17 days ago by 43k • written 18 days ago by ★ 2.5k
1
vote
0
replies
173
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 17 days ago by 43k • written 19 days ago by ★ 2.5k
8
votes
2
replies
774
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
20 days ago by David Langenberger 11k
0
votes
0
replies
143
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 22 days ago by 43k • written 22 days ago by ★ 2.5k
0
votes
0
replies
145
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
24 days ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
564
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
27 days ago by Johannes W. Dietrich • 0
0
votes
0
replies
203
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 28 days ago by 43k • written 28 days ago by ★ 2.5k
0
votes
0
replies
166
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 28 days ago by 43k • written 28 days ago by ★ 2.5k
0
votes
0
replies
164
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
4 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
160
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
5 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
150
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
5 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
229
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
6 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
167
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
6 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
272
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 6 weeks ago by • 0 • written 11 weeks ago by ▴ 10
1
vote
0
replies
195
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
6 weeks ago by David Langenberger 11k
0
votes
0
replies
152
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
152
views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
6 weeks ago by sina.majidian ▴ 20
1
vote
0
replies
154
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
7 weeks ago by David Langenberger 11k
1
vote
1
reply
193
views
News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 7 weeks ago by 43k • written 7 weeks ago by • 0
0
votes
0
replies
184
views
News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 7 weeks ago by 43k • written 7 weeks ago by ★ 2.5k
0
votes
0
replies
217
views
News: The 2024 Canadian Bioinformatics Workshops are here!
CBW workshop training
8 weeks ago by bioinformatics.ca • 0
0
votes
0
replies
172
views
News: Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R manipulation tidyverse data
8 weeks ago by Sole • 0
0
votes
0
replies
194
views
News: Online course: Reproducibility in Bioinformatics
Docker Singularity WorkflowManagementSystems Reproducibility
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
245
views
News: Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly Nanopore longreads
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
232
views
News: Webinar about scRNA-seq cell type prediction
scRNAseq
updated 8 weeks ago by 141k • written 8 weeks ago by • 0
0
votes
0
replies
240
views
News: Online course: Spatial Omics in R/Bioconductor
R Spatial-Omics Bioconductor tidyverse transcriptomics
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
204
views
News: Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference Population-Genomics Demographic-Models
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
177
views
News: Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R Proteomics Bioconductor Mass-Spectrometry
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
0
votes
0
replies
188
views
News: Virtual Workshops with the UConn Computational Biology Core
Workshop genomics
updated 10 weeks ago by 141k • written 10 weeks ago by ▴ 10
0
votes
0
replies
176
views
News: NGS Data Analysis Courses for Absolute Beginners
NGS DNAseq RNAseq singlecellsequencing DataAnalysis
10 weeks ago by David Langenberger 11k
0
votes
0
replies
194
views
News: Online course: Genome Assembly and Annotation
Annotation Genome-Assembly Nanopore Pacbio
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
1,000 results • Page 1 of 20
Recent Votes
cellular niches analysis with spatial transcriptome data in Seurat and Bioconductor
Answer: Seurat merge and batch correction
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
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Recent Replies
Comment: Create a new bed file with all pairwise combinations between two other bed files by J • 0
Thank you for replying Pierre. I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP awk 'B…
Comment: Create a new bed file with all pairwise combinations between two other bed files by Pierre Lindenbaum 161k
> using bcftools Show us what you tried
Answer: gvcf joint calling by Jeremy Leipzig 22k
> Hi, guys, there is a question about the genomic gVCF file. I wonder > that since gVCF contains the non-var block records, why after merge…
Comment: Missing protein (VEGF-A) in String db by shalespringer • 0
Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
These are the first lines of the output: (Please is it normal to have NA in the P value column ?) CHR …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
So I used the barcodes that I created (combos of positions 1-10 and 11-20) and I obtained similar alignment stats as the paper I pulled the…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
Thank you so much, it actually worked!
Answer: Rare Disease Variant Pathway Analysis by LauferVA 4.2k
Hi @efc1e545 , First a caveat. the information we most need in order to help guide you to a successful conclusion is not provided in thi…
Answer: Sequence read length shorter than flow cell specification by swbarnes2 14k
The company probably had you share your run with someone who needed the extra bases. So you get the extra bases free. Just use them unle…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by Ram 43k
Thank you, the `csvtk spread` is super useful. I usually import into R using `lapply` then `Reduce` using `merge` but this might be easier.
Comment: Annovar using R package by DKA ▴ 40
Thank you for your guidance. The thing is that I am unfamiliar with using such environments, unfortunately.
Comment: Treatment VS Control in Single Cell RNAseq analysis by ATpoint 82k
Open a new question, with details.
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets by ATpoint 82k
I recommend https://bioconductor.org/books/3.18/OSCA.basic/normalization.html as well as the "advanced" section in this book.
Comment: Why gatk VariantAnnotator required bam and coverage files by QX • 0
thank you!
Comment: Treatment VS Control in Single Cell RNAseq analysis by kilcdincer ▴ 10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis? Can I reach its GitHub reposit…
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