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811 results • Page 6 of 17
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News: Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
R
updated 11 months ago by 43k • written 6.1 years ago by ▴ 60
1
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1.1k
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News: DataTech19 submission deadline and keynotes: Jared Lander, Mine Cetinkaya-Rundel, Debbie Bard
R data-science HPC python conference
updated 11 months ago by 43k • written 5.5 years ago by ▴ 20
1
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0
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838
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News: Utrecht Bioinformatics Center: online seminars
DNA-damage Utrecht epigenomics
updated 11 months ago by 43k • written 3.9 years ago by ▴ 230
1
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2.2k
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News: UniProtKB FASTA headers: Addition of NCBI taxonomy identifier
swiss-prot uniprot taxonomy fasta
updated 12 months ago by 43k • written 6.4 years ago by ★ 2.4k
1
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1.2k
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News: Workshop for Comparative genomics with a focus on structural variation
genome structural-variant
updated 11 months ago by 43k • written 5.2 years ago by 9.7k
1
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0
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750
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News: Check out precision FDA's Featured Expert Blog from Dr. Charles Eaton
biomarker Dupytrens genetic crowd-sourcing
updated 11 months ago by 43k • written 5.2 years ago by ▴ 60
1
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0
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900
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News: Spaces left on Bioinformatics Workflows with Snakemake Course
workflow snakemake bash course
updated 11 months ago by 43k • written 5.0 years ago by ▴ 40
1
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0
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890
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News: Subchallenge 2 of the precisionFDA NCI-CPTAC Mislabeling Challenge
multiomics omics challenge
updated 11 months ago by 43k • written 5.4 years ago by ▴ 40
1
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0
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963
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News: Course: Getting started with R
R statistics
updated 12 months ago by 43k • written 6.3 years ago by ★ 2.5k
1
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0
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862
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News: UniProt: Changes to Proteomes
uniprot proteome
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
1
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0
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150
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News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 70
1
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0
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314
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News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
8 months ago by carlopecoraro2 ★ 2.5k
1
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0
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1.7k
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News: 2018 Summer School for Computational Genomics
RNA-Seq computational-genomics
updated 12 months ago by 43k • written 6.4 years ago by ▴ 10
1
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0
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1.1k
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News: LAST CALL: Advanced Python for Biologists.13-17 November 2017 Berlin
Python-Programming
updated 12 months ago by 43k • written 6.6 years ago by ★ 2.5k
1
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0
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1.1k
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News: ONLINE COURSE Introduction to R for ecologists and evolutionary biologists (IRFB04) This course will be delivered live
R
updated 11 months ago by 43k • written 3.9 years ago by ▴ 110
1
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0
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699
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News: SNAKEMAKE course in Berlin. Last places available
Python
updated 11 months ago by 43k • written 5.3 years ago by ★ 2.5k
1
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2
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1.7k
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News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 11 months ago by 43k • written 5.1 years ago by ▴ 580
1
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0
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966
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News: UniProtKB: Change of the annotation topic 'Enzyme regulation' to 'Activity regulation', not before Sep 12th, 2018
UniProt
updated 11 months ago by 43k • written 6.0 years ago by ★ 2.4k
1
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0
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195
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News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
8 weeks ago by PeterC_NCBI ▴ 410
1
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0
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802
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News: Announcing the Genetic Engineering Attribution Challenge!
machine-learning data-science competition
updated 11 months ago by 43k • written 3.7 years ago by ▴ 10
1
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0
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213
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News: Online course - Introduction to Machine Learning in R for omics data
R Omics MachineLearning StatisticalLearning
4 months ago by carlopecoraro2 ★ 2.5k
1
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2
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1.7k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 11 months ago by 43k • written 4.1 years ago by ★ 3.7k
1
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0
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742
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News: Course: Speciation Genomics in Canada - Quebec City, 2-6 September 2019
snp R next-gen
updated 11 months ago by 43k • written 4.9 years ago by ▴ 40
1
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0
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1.0k
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News: Phylogenomics course in Berlin
next-gen SNP
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
0
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0
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503
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News: Course - Structural Variant detection and comparison
SVs Structural-Variants
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
0
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0
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402
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News: Course - Data Visualization in R with ggplot2
R Data-Visualization ggplot2
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
0
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0
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1.8k
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News: Phylogenetic comparative methods for studying diversification and phenotypic evolution (PCME01)
R
updated 11 months ago by 43k • written 5.6 years ago by ▴ 60
0
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0
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179
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News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy Python NumPy
updated 15 days ago by 43k • written 15 days ago by • 0
0
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0
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439
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News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 9 months ago by 43k • written 10 months ago by ★ 2.5k
0
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0
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1.0k
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News: Call For Papers - PSB 2019 Special session on Biological Data Privacy
paper
updated 11 months ago by 43k • written 6.1 years ago by • 0
0
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0
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412
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News: RADseq data analysis course
RADseq Phylogenomics Stacks Population-Genomics
7 months ago by carlopecoraro2 ★ 2.5k
0
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0
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253
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News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
8 weeks ago by carlopecoraro2 ★ 2.5k
0
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0
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664
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News: Training in Molecular Modeling and Molecular Dynamics @NIH, July 21 - 24, 2020
Dynamics RNA-Seq Modeling next-gen
updated 11 months ago by 43k • written 4.0 years ago by ▴ 140
0
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0
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1.1k
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News: Training - Introduction to genome-wide association studies (GWAS) - Physalia-Courses
GWAS SNP next-gen genome
updated 11 months ago by 43k • written 5.0 years ago by ★ 2.5k
0
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0
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1.1k
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News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data
GSA R RNA-Seq
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
0
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0
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209
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News: Online course: Meta-analysis in R
Meta-Analysis R
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
0
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0
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809
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News: EMBL Conference: From Functional Genomics to Systems Biology
Proteomics Genomic Systems-biology Chromatin
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
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0
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589
views
News: Speciation Genomics course
R SNP next-gen
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
votes
0
replies
1.3k
views
News: STACKS Workshop in Berlin
RADseq SNP
updated 11 months ago by 43k • written 6.0 years ago by ★ 2.5k
0
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0
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1.0k
views
News: Epigenomics Workshop in Berlin (28th May-1st June 2018)
RNA-Seq ChIP-Seq ATAC-seq
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
0
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0
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1.6k
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News: Course: Advanced Python for Biologists. Berlin (Germany). 13-17 November 2017
Python NGS
updated 12 months ago by 43k • written 6.6 years ago by ▴ 20
0
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0
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8.8k
views
News: 2nd edition: Population Genomics course in Berlin. May 14-18 2018
Population-Genomics Plink R VCFtools
updated 12 months ago by 43k • written 6.6 years ago by ★ 2.5k
0
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0
replies
343
views
News: Practical Hands-On Introduction to R course
R Tidyverse Data-Analysis
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
1
reply
827
views
News: LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS Online-Workshop
updated 3 months ago by 43k • written 4 months ago by 11k
0
votes
0
replies
963
views
News: Applied Statistics and Bioinformatics with R and Bioconductor
R next-gen Bioconductor
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
0
votes
0
replies
683
views
News: EMBL Course: Computing Skills For Reproducible Research: Software Carpentry
Computation
updated 11 months ago by 43k • written 4.5 years ago by ▴ 10
0
votes
0
replies
451
views
News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 8 months ago by 43k • written 8 months ago by • 0
0
votes
0
replies
1.4k
views
News: eDNA Metabarcoding Workshop in Canada
R eDNA next-gen
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
0
votes
0
replies
734
views
News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
Genomics RNA-Seq Biomedical next-gen
updated 11 months ago by 43k • written 4.2 years ago by ▴ 140
0
votes
0
replies
857
views
News: Course: Getting started with R
R
updated 11 months ago by 43k • written 6.0 years ago by ★ 2.5k
811 results • Page 6 of 17
Recent Votes
Answer: featureCounts output summary assigned value higher than uniquely mapped reads fr
Answer: Doubt about the process of annotation, detection, identification and classificat
Answer: Filtering VCF files based on VAF giving incorrect results
Problems with breakdancer (sv caller) output.
Problems with breakdancer (sv caller) output.
Comment: Add stats to boxplot in R
Answer: Genotyping sites with N in reference genome
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Recent Replies
Comment: Doubt about the process of annotation, detection, identification and classificat by MarcosCosta • 0
Thank you very much, you've helped me a lot
Comment: Filtering VCF files based on VAF giving incorrect results by Arton • 0
Thank you. I can't try a completely new tool but I will keep your command for future use. Do you think my commands were correct? For exampl…
Comment: Add stats to boxplot in R by Ghada • 0
Thanks. Thats work
Comment: Genotyping sites with N in reference genome by Zhenyu Zhang ★ 1.2k
Whether N -> A/T/G/C represents a variant is heavily dependent on the tool itself, and I know most tools don't. Since you don't see it in y…
Comment: calculating genomic coverage/ base overlap in R by marco.barr ▴ 110
The code seems correct at first glance... How did you generate the data in the Excel file? Have you checked the exon annotations? You could…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Did you remeber to unzip/untar the `nt` preformatted files that you downloaded?
Comment: Genotyping sites with N in reference genome by shpak.max ▴ 50
Just to clarify, I have set additional sites in the reference genome to 'N', which means (based on your statement) that these will not be g…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by Pierre Lindenbaum 161k
see https://www.biostars.org/p/9496674/ <!-- when i runed blastn(version 2.15) and nt database(latest version). I used aspera to download…
Answer: Genotyping sites with N in reference genome by Pierre Lindenbaum 161k
> Does UnifiedGenotyper skip/ignore sites where the reference genotype is N yes. The variant is in YOUR data, not in the reference where '…
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline? by yura.grabovska ▴ 70
Do you have samples that should in theory have a good degree over overlap in terms of cell types across the two sequencing types? I would …
Comment: Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file by asalimih ▴ 60
I found out that vep is only checking the GT field therefore assigning HOM to the Zygosity. Therefore the problem should be from deepvarian…
Comment: Add stats to boxplot in R by Lélé ▴ 10
To remove "Kruskall Wallis" you can try adding the argument label="p" or label = "p.signif" which displays the p-value or *** like this: …
Answer: Sequencing Depth (Read Depth) Calculations by GenoMax 142k
You could also use `pandepth` ([**LINK**][1]) or `mosdepth` ([**LINK**][2]) as well. These will allow you to be flexible about windowed cov…
Comment: Sequencing Depth (Read Depth) Calculations by Pierre Lindenbaum 161k
it looks looks ok to me. <!-- This cmd works and gives me 40.5235, I was wondering whether this cmd is right or wrong, and does anyone hav…
Comment: Add stats to boxplot in R by Ghada • 0
Great. thats work. Do you know how can I remove the kruskall-Wallis name from the plot? Also I would like to draw a line under the kruskall…
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