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News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
0
votes
2
replies
899
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 14 months ago by 43k • written 14 months ago by ★ 2.5k
6
votes
2
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2.5k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 13 months ago by 43k • written 7.2 years ago by ★ 2.5k
6
votes
2
replies
1.8k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 14 months ago by 43k • written 11.5 years ago by 11k
1
vote
2
replies
1.4k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 11 months ago by 43k • written 6.2 years ago by ▴ 70
0
votes
2
replies
1.5k
views
News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 12 months ago by 43k • written 7.1 years ago by ▴ 70
7
votes
2
replies
1.2k
views
News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
4 months ago by David Langenberger 11k
1
vote
2
replies
270
views
News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering Spatial-transcriptomics
updated 8 days ago by • 0 • written 9 days ago by ▴ 10
0
votes
2
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2.2k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 14 months ago by 43k • written 11.4 years ago by 11k
1
vote
2
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1.9k
views
News: Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
next-gen GATB
updated 13 months ago by 43k • written 7.6 years ago by ▴ 140
0
votes
1
reply
393
views
News: Online Course - Genomic Prediction
Genomic-Prediction Selective-Breeding
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
1
vote
1
reply
2.6k
views
News: Benefits of DNA Testing - Xcode Life sciences provides preventive healthcare solution
personal-genomics genetic-testing
updated 16 months ago by 43k • written 9.0 years ago by • 0
3
votes
1
reply
1.4k
views
News: Ensembl in Google Summer of Code
Ensembl Internship Google-Summer-of-Code GSOC
updated 12 months ago by 43k • written 7.2 years ago by 23k
2
votes
1
reply
1.9k
views
News: In a recent Nature News : "Papers with shorter titles get more citations"
citations
updated 13 months ago by 43k • written 8.7 years ago by ★ 1.2k
0
votes
1
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1.7k
views
News: Webinar Series: Diving Deep into Next Generation Sequencing (NGS) Data Analysis
NGS sangenix webinar
updated 13 months ago by 43k • written 7.5 years ago by ▴ 750
2
votes
1
reply
2.0k
views
News: Genomic Data Visualization and Interpretation Workshop
next-gen R genome RNA-Seq
updated 12 months ago by 43k • written 6.9 years ago by ★ 2.5k
0
votes
1
reply
883
views
News: :: FINAL CALL :: Bioinformatics Pipeline Development with Nextflow (only 3 seats left)
pipeline nextflow development
2.6 years ago by David Langenberger 11k
1
vote
1
reply
1.7k
views
News: Igb Service Interruption - Backup Site Address
genome-browser RNA-seq
updated 14 months ago by 43k • written 10.6 years ago by ★ 2.4k
4
votes
1
reply
1.8k
views
News: NCBI BLAST URL domain changes to take effect December 1, 2014
blast ncbi
updated 2.2 years ago by 43k • written 9.5 years ago by ★ 2.2k
11
votes
1
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2.9k
views
News: NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq training NGS workshop
updated 22 months ago by 43k • written 7.8 years ago by 11k
0
votes
1
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556
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News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 15 months ago by 43k • written 17 months ago by ★ 2.5k
0
votes
1
reply
626
views
News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 23 months ago by 142k • written 23 months ago by • 0
1
vote
1
reply
3.3k
views
News: Course: STATISTICS FOR BIOLOGISTS USING R. 18-22 September (Berlin)
statistics R
updated 13 months ago by 43k • written 7.3 years ago by ★ 2.5k
3
votes
1
reply
845
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 11 months ago by 43k • written 4.9 years ago by ▴ 150
11
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1
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4.2k
views
News: GATB will provide developer support via Biostar
minia dsk gatb
updated 2.3 years ago by 43k • written 10.0 years ago by ★ 1.5k
0
votes
1
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1.6k
views
News: Course: RADseq data analysis in Berlin (4-8/12/17). LAST CALL
STACKs RADseq
updated 12 months ago by 43k • written 6.5 years ago by ★ 2.5k
4
votes
1
reply
1.2k
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
4
votes
1
reply
2.2k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 9.8 years ago by ★ 2.0k
1
vote
1
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2.6k
views
News: R package PopGenome: http://popgenome.weebly.com/
R population-genomics popgenome VCF
updated 14 months ago by 43k • written 9.1 years ago by ▴ 50
0
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1
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3.3k
views
News: Call For Book Chapters: Big Data Analytics in Genomics (Springer USA)
Book-Chapter CFP
updated 21 months ago by 43k • written 8.5 years ago by ▴ 10
5
votes
1
reply
1.2k
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 15 months ago by 43k • written 3.6 years ago by 22k
8
votes
1
reply
3.4k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 14 months ago by 43k • written 9.6 years ago by 11k
0
votes
1
reply
474
views
News: Research Training In NGS Data Analysis
analysis data-analysis
updated 17 months ago by 43k • written 17 months ago by • 0
3
votes
1
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628
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News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 17 months ago by 43k • written 2.0 years ago by ▴ 60
0
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1
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2.4k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 17 months ago by 43k • written 2.1 years ago by ▴ 420
0
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1
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1.5k
views
News: Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium NGS
updated 12 months ago by 43k • written 6.6 years ago by 5.8k
2
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1
reply
1.4k
views
News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 12 months ago by 43k • written 6.9 years ago by ▴ 610
0
votes
1
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978
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News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
3 months ago by David Langenberger 11k
2
votes
1
reply
1.8k
views
News: Us Researchers: Help Influence Stem Education With New Nsf Strategies (Deadline Next Tuesday)
education genomics
updated 14 months ago by 43k • written 10.3 years ago by 11k
3
votes
1
reply
1.4k
views
News: GATK returns to a fully open-source license
gatk
updated 12 months ago by 43k • written 7.0 years ago by 100k
1
vote
1
reply
1.7k
views
News: 2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq Workshop NGS RNA-Seq
updated 11 months ago by 43k • written 6.2 years ago by 11k
0
votes
1
reply
196
views
News: Online NGS Training Program
next-gen-sequencing RNA-Seq ChIP-Seq
updated 11 months ago by 43k • written 4.9 years ago by • 0
7
votes
1
reply
685
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
24 months ago by kzkedzierska ▴ 290
2
votes
1
reply
479
views
News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 7 months ago by 10k • written 7 months ago by ▴ 410
0
votes
1
reply
629
views
News: 6th Berlin Summer School in NGS Data Analysis (June 13-17, 2022)
RNAseq DNAseq transcriptomics
2.2 years ago by David Langenberger 11k
1
vote
1
reply
1.3k
views
News: New International MScProgram: Data Science and Information Technologies (DSIT) from the University of Athens [New Application Deadline 6 Aug 18]
studies data-science
updated 11 months ago by 43k • written 5.8 years ago by ★ 1.3k
0
votes
1
reply
1.1k
views
News: New Alexa skill provides voice-based access to Protein Data Bank data
protein-structure pdb
updated 12 months ago by 43k • written 6.5 years ago by • 0
0
votes
1
reply
1.6k
views
News: :: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS RNA-Seq Training
updated 11 months ago by 43k • written 4.5 years ago by 11k
1
vote
1
reply
693
views
News: 20% Off - Bioinformatics Pipeline Development with Nextflow (May 15-17 in Leipzig, Germany)
NGS nextflow RNAseq pipelines DNAseq
13 months ago by David Langenberger 11k
5
votes
1
reply
2.3k
views
News: New version of the GATB library
minia next-gen gatb dsk
updated 2.3 years ago by 43k • written 9.3 years ago by ▴ 730
1,000 results • Page 6 of 20
Recent Votes
Answer: featureCounts output summary assigned value higher than uniquely mapped reads fr
Answer: Doubt about the process of annotation, detection, identification and classificat
Answer: Filtering VCF files based on VAF giving incorrect results
Problems with breakdancer (sv caller) output.
Problems with breakdancer (sv caller) output.
Comment: Add stats to boxplot in R
Answer: Genotyping sites with N in reference genome
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Answer: How can you *consistently* download BioProject IDs from NCBI's BioSample databas by Ash • 0
I know this was asked several years ago, but finding this post helped me solve my own problem and in the process I solved this one too. …
Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by swbarnes2 14k
Would Parkinson's be expected to have an effect on blood cells? Neurons, sure, but blood cells?
Comment: Doubt about the process of annotation, detection, identification and classificat by MarcosCosta • 0
Thank you very much, you've helped me a lot
Comment: Filtering VCF files based on VAF giving incorrect results by Arton • 0
Thank you. I can't try a completely new tool but I will keep your command for future use. Do you think my commands were correct? For exampl…
Comment: Add stats to boxplot in R by Ghada • 0
Thanks. Thats work
Comment: Genotyping sites with N in reference genome by Zhenyu Zhang ★ 1.2k
Whether N -> A/T/G/C represents a variant is heavily dependent on the tool itself, and I know most tools don't. Since you don't see it in y…
Comment: calculating genomic coverage/ base overlap in R by marco.barr ▴ 110
The code seems correct at first glance... How did you generate the data in the Excel file? Have you checked the exon annotations? You could…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Did you remeber to unzip/untar the `nt` preformatted files that you downloaded?
Comment: Genotyping sites with N in reference genome by shpak.max ▴ 50
Just to clarify, I have set additional sites in the reference genome to 'N', which means (based on your statement) that these will not be g…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by Pierre Lindenbaum 161k
see https://www.biostars.org/p/9496674/ <!-- when i runed blastn(version 2.15) and nt database(latest version). I used aspera to download…
Answer: Genotyping sites with N in reference genome by Pierre Lindenbaum 161k
> Does UnifiedGenotyper skip/ignore sites where the reference genotype is N yes. The variant is in YOUR data, not in the reference where '…
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline? by yura.grabovska ▴ 70
Do you have samples that should in theory have a good degree over overlap in terms of cell types across the two sequencing types? I would …
Comment: Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file by asalimih ▴ 60
I found out that vep is only checking the GT field therefore assigning HOM to the Zygosity. Therefore the problem should be from deepvarian…
Comment: Add stats to boxplot in R by Lélé ▴ 10
To remove "Kruskall Wallis" you can try adding the argument label="p" or label = "p.signif" which displays the p-value or *** like this: …
Answer: Sequencing Depth (Read Depth) Calculations by GenoMax 142k
You could also use `pandepth` ([**LINK**][1]) or `mosdepth` ([**LINK**][2]) as well. These will allow you to be flexible about windowed cov…
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