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639 results • Page 7 of 13
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News: Training in Linux for Biomedical Researchers@NIH, USA,May 13-15,2020
Linux Training Biomedical Researchers Programming
updated 11 months ago by 44k • written 4.3 years ago by ▴ 140
0
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0
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821
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News: EMBL Conference: In situ Structural Biology - From Cryo-EM to Integrative Modelling
Biophysical-analysis Modelling Structural-Biology
updated 11 months ago by 44k • written 4.6 years ago by ▴ 10
0
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0
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819
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News: UniProt: Change of line length in UniProtKB text format
uniprot
updated 11 months ago by 44k • written 4.7 years ago by ★ 2.4k
0
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0
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819
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News: Data Visualization Course in Berlin
R
updated 11 months ago by 44k • written 4.9 years ago by ★ 2.5k
3
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0
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818
views
News: Phylogenomics course in Berlin
snp R next-gen
updated 11 months ago by 44k • written 4.5 years ago by ★ 2.5k
0
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0
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818
views
News: TScourse: Introduction to GWAS (Genome-Wide Association Studies) (July 6th-10th, 2020, Crete (Greece))
PLINK PRSice GWAS R Genome
updated 11 months ago by 44k • written 4.1 years ago by ▴ 70
0
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0
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817
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News: Phylogenomics course in Berlin
SNP next-gen
updated 12 months ago by 44k • written 5.2 years ago by ★ 2.5k
0
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0
replies
813
views
News: Cellosaurus release 35 is available
knowledgebase cell-line
updated 11 months ago by 44k • written 3.9 years ago by ▴ 120
0
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0
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811
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News: EMBL Conference: From Functional Genomics to Systems Biology
Proteomics Genomic Systems-biology Chromatin
updated 11 months ago by 44k • written 4.6 years ago by ▴ 10
2
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0
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809
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News: RNAseq data analysis with R and Bioconductor
R RNA-Seq RNA Bioconductor
updated 11 months ago by 44k • written 4.3 years ago by ★ 2.5k
0
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0
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808
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News: Training - Introduction to Bioinformatics for beginners
assembly SNP RNA-Seq sequencing
updated 11 months ago by 44k • written 3.8 years ago by ★ 2.5k
0
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0
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807
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News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
sequence RNA-Seq training
updated 11 months ago by 44k • written 4.5 years ago by ▴ 140
0
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0
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806
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News: Statistical Computing for Environmental Science with R and Rstudio
Rstudio online-course R-project statistics
updated 11 months ago by 44k • written 3.9 years ago by ▴ 70
0
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0
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806
views
News: UniProt: Change of annotation topic 'Interaction'
uniprot xml
updated 11 months ago by 44k • written 4.7 years ago by ★ 2.4k
0
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0
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804
views
News: 5-day course on Metabolomics in Berlin
Metabolomics R
updated 11 months ago by 44k • written 4.6 years ago by ★ 2.5k
1
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0
replies
804
views
News: Announcing the Genetic Engineering Attribution Challenge!
machine-learning data-science competition
updated 11 months ago by 44k • written 3.8 years ago by ▴ 10
2
votes
0
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803
views
News: Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene RNA-Seq next-gen
updated 11 months ago by 44k • written 5.0 years ago by ★ 2.5k
0
votes
0
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800
views
News: Training in Statistical Analysis using R @NIH, July 8 - 10, 2020
R Biomedical next-gen Statistical-analysis
updated 11 months ago by 44k • written 4.0 years ago by ▴ 140
1
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0
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799
views
News: OmicsLogic Genomics Training Program starts July 23
genome dna genomics
updated 11 months ago by 44k • written 4.9 years ago by ▴ 340
3
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0
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798
views
News: ::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS Workshop
updated 11 months ago by 44k • written 4.6 years ago by 11k
0
votes
0
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794
views
News: Bioconductor (Bioc) 3.9
bioconductor
updated 11 months ago by 44k • written 5.1 years ago by 88k
0
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0
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794
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
Graphs R Maps Plots
updated 11 months ago by 44k • written 4.5 years ago by ▴ 140
0
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0
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794
views
News: Do you want to improve your programming skills?
Programming Unix Bash Python
updated 11 months ago by 44k • written 4.9 years ago by ★ 2.5k
0
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0
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794
views
News: Single-molecule long-read sequencing reveals the chromatin basis of gene expression
sequencing
updated 11 months ago by 44k • written 4.9 years ago by • 0
0
votes
0
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790
views
News: EMBL Course: Exploratory Analysis of Biological Data: Data Carpentry
Data-Analysis Exploratory-Analysis Biological-Data
updated 11 months ago by 44k • written 4.6 years ago by ▴ 10
0
votes
0
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790
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
training RNA-seq
updated 12 months ago by 44k • written 5.5 years ago by ▴ 140
1
vote
0
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780
views
News: Gen3 DCF Services Webinar - Authentication, Authorization and Indexing
Gen3 Webinar
updated 12 months ago by 44k • written 5.2 years ago by ▴ 10
0
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0
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780
views
News: Course - Metabolomics: from study design to data analysis
Metabolomics R Bioconductor
updated 11 months ago by 44k • written 4.6 years ago by ★ 2.5k
0
votes
0
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776
views
News: Webinar: Single Cell Multi-omics Data Analysis in Partek Flow - Visualization of CRISPR Data
CRISPR single-cell
updated 11 months ago by 44k • written 4.5 years ago by ▴ 30
0
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0
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776
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News: Training in Programming for Biomedical Researchers @NIH, USA,March 2-5,2020
Researchers Biomedical Programming
updated 11 months ago by 44k • written 4.3 years ago by ▴ 140
0
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0
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776
views
News: EMBL Course: Circulating Tumour DNA in Clinical Applications
Liquid-biopsy Clinical-application Tumour-cells
updated 11 months ago by 44k • written 4.6 years ago by ▴ 10
0
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0
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775
views
News: Introduction to Bayesian Inference in Practice
statistics MCMC R Bayesian Python
updated 11 months ago by 44k • written 3.9 years ago by ▴ 70
2
votes
0
replies
775
views
News: Interested in learning more about Bayesian Statistics?
Bayesian-Statistics R Stan
updated 11 months ago by 44k • written 4.5 years ago by ★ 2.5k
0
votes
0
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775
views
News: EMBO | EMBL Symposium: The Four-Dimensional Genome
microscopy genome DNA genomics
updated 11 months ago by 44k • written 4.8 years ago by ▴ 10
3
votes
2
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775
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
9 months ago by PeterC_NCBI ▴ 410
1
vote
2
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770
views
News: Ensembl reduced functionality, early March
ensembl
updated 11 months ago by 44k • written 4.4 years ago by 23k
0
votes
0
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770
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
Biomedical next-gen Data-analysis
updated 11 months ago by 44k • written 4.8 years ago by ▴ 140
0
votes
0
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769
views
News: Interested in learning more about CRISPR Genome Editing?
Genome-Editing CRISPR
updated 11 months ago by 44k • written 4.7 years ago by ★ 2.5k
0
votes
0
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769
views
News: Training in Rosetta for Molecular Modeling and Design @NIH
Molecular-Design Modeling RNA-Seq Biomedical
updated 11 months ago by 44k • written 4.7 years ago by ▴ 140
0
votes
0
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764
views
News: UniProtKB: Standardization of 'Catalytic activity' annotations
uniprot
updated 12 months ago by 44k • written 5.7 years ago by ★ 2.4k
0
votes
0
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764
views
News: EMBO | EMBL Symposium: The Organism and its Environment
genotype organisms biological chemical phenotype
updated 11 months ago by 44k • written 4.8 years ago by ▴ 10
0
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0
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763
views
News: CFP Special Collection: Parallel Computing in Evolutionary Bioinformatics, SAGE Journal, JCR 2.203 (Q2)
CFP
updated 11 months ago by 44k • written 4.8 years ago by • 0
2
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0
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762
views
News: Eukaryotic Metabarcoding course in Berlin. Last places left.
JAMP R metabarcoding Obitools
updated 11 months ago by 44k • written 4.4 years ago by ★ 2.5k
0
votes
0
replies
761
views
News: Cellosaurus release 34 is available
knowledgebase cell-line
updated 11 months ago by 44k • written 4.2 years ago by ▴ 120
0
votes
0
replies
761
views
News: Programming in R
R Programming
updated 12 months ago by 44k • written 5.2 years ago by ★ 2.5k
0
votes
0
replies
759
views
News: Training in Computational Drug Design and Discovery @NIH
Computational-Biology RNA-Seq Drug-Design Biomedical
updated 11 months ago by 44k • written 3.9 years ago by ▴ 140
0
votes
0
replies
758
views
News: Gen3 Data Modeling - Herding Data Submissions & Hunting Down Data(Sheepdog & Peregrine)
sequence Gen3-Webinar genome sequencing RNA-Seq
updated 11 months ago by 44k • written 5.1 years ago by ▴ 10
0
votes
0
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757
views
News: Training in Programming for Biomedical Researchers @NIH, July 14 - 17, 2020
Researchers Biomedical Programming
updated 11 months ago by 44k • written 4.0 years ago by ▴ 140
1
vote
0
replies
756
views
News: Cellosaurus release 32 is available
knowledgebase database cell-line
updated 11 months ago by 44k • written 4.7 years ago by ▴ 120
0
votes
0
replies
754
views
News: Training in Computational Drug Design and Discovery @NIH,USA, January 21-24, 2020
Drug-design RNA-Seq genomics
updated 11 months ago by 44k • written 4.5 years ago by ▴ 140
639 results • Page 7 of 13
Recent Votes
A: Fold change - a final explanation
Comment: scRNA-seq quality control
Comment: How to get the ratio of allele counts from GATK derived VCF file?
Setting up Aspera Connect (ascp) on Linux and macOS
Setting up Aspera Connect (ascp) on Linux and macOS
Answer: Genes' fpkm values through cufflink
Answer: Genes' fpkm values through cufflink
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Recent Replies
Comment: Z score by Akash D ▴ 40
Alright! Got you...
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by i.sudbery 19k
It very much depends on whether the OP does want/need to do the CellRanger runs locally or not. Doesn't really matter if its only occasion…
Comment: log2 fold change in RNA-seq analysis by Mensur Dlakic ★ 27k
Everything is already explained on this page, just read everything already written above. Specifically, [**this comment**][1]. [1]: htt…
Answer: log2 fold change in RNA-seq analysis by May Ling • 0
Good day everyone, Sorry I found a bit confusing and would appreciate if I could clarify on the calculation. I am using DESeq. My desire…
Answer: GWAS Phenotypes by 韩雨 • 0
In my opinion, the basis of the question is to solve whether the phenotype is regulated by genetics. In the aspect of genetic, the estima…
Answer: Classic threshold for log2 fold change in RNA-seq experiment by May Ling • 0
Good day everyone, Sorry I found a bit confusing and would appreciate if I could clarify on the calculation. I am using DESeq. My desire…
Comment: some error in building kraken2 database by ahmet • 0
Were you able to fix this issue? I'm also trying to add external species to krakendb
Comment: Z score by ATpoint 82k
logFCs are a bit difficult to cluster I think, because fold changes without stats attached to it are meaningless. They can be very big, due…
Comment: Z score by Akash D ▴ 40
Ok. However, if i perform it on log2FC, there wont be any control samples visible in my heatmap. Your answer is perfect.
Comment: Z score by ATpoint 82k
You can apply Z-scores on whatever you want, but it must make sense and depends on what you want to do. What is the context? See for exampl…
Answer: Z score in RNAseq by Akash D ▴ 40
Can Z score be applied on log2FC and then visualized? Alternatively, Can log2FC be converted to Z scores and then visualized as heatmap?
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by ATpoint 82k
Just for comparison, I deal with scRNA-seq daily and my workstation is a 12700k i7 with 128GB RAM and even this is actually more than I nee…
Answer: Ideal PC configurations and operating system for bioinformatics laboratory by colindaven 6.4k
- As others have said, 1-2 workstations are probably the way to go. - A Linux OS like Ubuntu is probably easiest and has best docs - RA…
Comment: How to get the ratio of allele counts from GATK derived VCF file? by anikcropscience ▴ 230
Ok, thank you for the reply. I will check out the DP field then.
Comment: Alternatives To Liftover by Thanujay S • 0
Hey! Would you consider building an API for the same? Is that something you have planned?
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