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News: Online statistics courses
R statistics
8 months ago by carlopecoraro2 ★ 2.2k
0
votes
1
reply
335
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News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 8 months ago by 125k • written 8 months ago by • 0
2
votes
0
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333
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News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
8 months ago by Elisabeth Gasteiger ★ 2.2k
3
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0
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364
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News: Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics binning
updated 8 months ago by 125k • written 8 months ago by ▴ 60
0
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0
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232
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News: Nanopore direct RNA Sequencing - online course
Sequencing direct Nanopore RNA
8 months ago by carlopecoraro2 ★ 2.2k
0
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228
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News: ONLINE COURSE - LINEAR MIXED MODELS IN R - September 26th-30th
Models Mixed R
8 months ago by carlopecoraro2 ★ 2.2k
7
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1
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434
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News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
8 months ago by kzkedzierska ▴ 290
0
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0
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273
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News: ONLINE course "Population genomic inference from low-coverage whole-genome sequencing data"
lcWGS Genomics Population
8 months ago by carlopecoraro2 ★ 2.2k
0
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0
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278
views
News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 7 weeks ago by 37k • written 9 months ago by ★ 2.2k
3
votes
1
reply
363
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News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 7 weeks ago by 37k • written 9 months ago by ▴ 60
0
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0
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276
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News: ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics Population RADseq Genomics Stacks
8 months ago by carlopecoraro2 ★ 2.2k
0
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0
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256
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News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 7 weeks ago by 37k • written 9 months ago by ★ 2.2k
1
vote
0
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389
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News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 7 weeks ago by 37k • written 9 months ago by ▴ 10
0
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2
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530
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News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
9 months ago by PeterC_NCBI ▴ 180
0
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189
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News: NCBI poster at Bio-IT World on the new cloud BLAST tool, ElasticBLAST
NCBI BLAST ElasticBLAST
9 months ago by PeterC_NCBI ▴ 180
1
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0
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265
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News: DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse data R analysis
9 months ago by carlopecoraro2 ★ 2.2k
0
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0
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349
views
News: Introduction to Nextflow course
Nextflow
9 months ago by carlopecoraro2 ★ 2.2k
0
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0
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304
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News: Online Course - A Practical Introduction to NGS Data Analysis (May 16-18, 2022)
NGS RNA DNA Workshop
9 months ago by David Langenberger 9.8k
6
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0
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334
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News: NGSchool2022: Machine Learning in Computational Biology
summer machine learning school ngschool ML statistics
9 months ago by kzkedzierska ▴ 290
0
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1
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317
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News: Introduction to Deep Learning course
DeepLearning MachineLearning bigdata
updated 9 months ago by 21k • written 9 months ago by ★ 2.2k
3
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3
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708
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News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
9 months ago by David Langenberger 9.8k
0
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0
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851
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News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel indel-calling
updated 7 weeks ago by 37k • written 9 months ago by ▴ 10
0
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0
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245
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News: Virtual Genome Assembly Workshop : May 16-19, 2022
assembly Genome Workshop
9 months ago by singh.vijender ▴ 50
1
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0
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272
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News: Data visualization in Python course
Data Visualization Python
9 months ago by carlopecoraro2 ★ 2.2k
0
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0
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244
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News: Landscape Genomics in R course
LandscapeGenomics
9 months ago by carlopecoraro2 ★ 2.2k
0
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0
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257
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News: Gene Set Enrichment Analysis in R workshop
GSE
9 months ago by carlopecoraro2 ★ 2.2k
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0
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233
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News: Conservation Genomics Workshop
ConservationGenomics
9 months ago by carlopecoraro2 ★ 2.2k
0
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0
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250
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News: A webinar about Harmony batch correction, by its author
scrna-seq single-cell rna-seq
10 months ago by Jennifer Pham ▴ 450
0
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1
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2.1k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 7 weeks ago by 37k • written 10 months ago by ▴ 220
0
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1
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765
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News: ::FINAL CALL:: Online Course | A Practical Introduction to NGS Data Analysis | March 30 - April 1, 2022
DNA-Seq RNA-Seq Workshop
10 months ago by David Langenberger 9.8k
1
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0
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250
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News: Reproducibility in Bioinformatics Workshop
Reproducibility
updated 7 weeks ago by 37k • written 10 months ago by ★ 2.2k
0
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1
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367
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News: 6th Berlin Summer School in NGS Data Analysis (June 13-17, 2022)
RNAseq DNAseq transcriptomics
10 months ago by David Langenberger 9.8k
0
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0
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233
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News: Cellosaurus release 41 is available
biocuration knowledgebase cell news line databases
10 months ago by Amos Bairoch ▴ 110
0
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0
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230
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News: RNAseq workshop (Model Species) : April4-7, 2022
RNAseq Model species Workshop
10 months ago by singh.vijender ▴ 50
1
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0
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363
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News: :: LAST CALL :: Bioinformatics Pipeline Development with Nextflow (April 4-7, 2022)
NGS Pipeline-Development Nextflow
updated 7 weeks ago by 37k • written 11 months ago by 9.8k
0
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0
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270
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News: 4th edition of the GWAS course
GWAS
11 months ago by carlopecoraro2 ★ 2.2k
0
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0
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258
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News: Course - An introduction to Nanopore direct RNA Sequencing
NanoporeDirectRNAseq
11 months ago by carlopecoraro2 ★ 2.2k
3
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0
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550
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News: Nextflow Slack Channel
nextflow slack
11 months ago by ATpoint 68k
0
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0
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287
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News: Reproducible Analysis With R course
Reproducibility
11 months ago by carlopecoraro2 ★ 2.2k
8
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1
reply
987
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News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 11 months ago by ★ 22k • written 12 months ago by 125k
0
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0
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275
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News: Reproducible data science with R course
R
11 months ago by carlopecoraro2 ★ 2.2k
0
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1
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676
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News: ::LAST CALL:: RNA-Seq Data Analysis Workshop, February 28 - March 3, 2022 in Berlin
RNAseq Transcriptomics RNA
11 months ago by David Langenberger 9.8k
0
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0
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274
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News: Machine Learning in R - course
MachineLearning
12 months ago by carlopecoraro2 ★ 2.2k
0
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0
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228
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News: Paleobiology in R: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY - course
Paleobiology
12 months ago by carlopecoraro2 ★ 2.2k
8
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8
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2.2k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar handbook bioinformatics education News
written 2.9 years ago by 96k
6
votes
13
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1.4k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
Ensembl VEP BLAT service News
5 months ago by Ben_Ensembl ★ 2.2k
0
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0
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626
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News: Illumina Webinar Germany
ngs sequencing
updated 5 months ago by 37k • written 3.2 years ago by • 0
0
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0
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1.2k
views
News: EMBO Practical Course: Microbial Metagenomics
Genomic-technologies
updated 8 weeks ago by 37k • written 3.3 years ago by • 0
8
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4
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1.5k
views
News: supporting vg users on biostars
vg graph vgteam genome News variation
updated 7 weeks ago by 4.4k • written 3.4 years ago by ★ 2.3k
0
votes
0
replies
792
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News: Training in Metagenomics Data Analysis @ NIH
next-gen Metagenomics training
updated 8 weeks ago by 37k • written 3.5 years ago by ▴ 130
233 results • Page 3 of 5
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Deseq2 with one factor and multiple levels
Answer: Error while trying to install salmon
Answer: Forcing Installation Of DMRcate
Gene Expression Omnibus Data Mining (IA): Quick and easy download of GEO data
SNP calling
Comment: Annotating ENS codes to gene name
1000 genomes project reference panel - GRCh38
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Recent Replies
Comment: Network analysis for two Factors by seidel 10k
Have you looked at any tutorials? Three are many out there. ([1][1], [2][2], [3][3], [etc.][4]) Do you have a preferred language? [1]: …
Comment: ceres score in crispr screen by seidel 10k
Are you looking for moral support or technical support? Have you tried using it with an older version of R and bioconductor? (i.e. circa 20…
Comment: PLINK2 selecting variants based on INFO score by chrchang523 9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
Answer: Error while trying to install salmon by Chris ▴ 10
Donwloading the package from conda (https://anaconda.org/conda-forge/boost/files?version=1.60.0) worked for me wget https://anaconda.org/…
Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix by Gordon Smyth ★ 5.4k
First issue is that GEO series matrix files can't be read using `read.delim`. Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score by m.c.roozen • 0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
Answer: samtools markdup in Rsamtools by joe ▴ 350
You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
Comment: samtools markdup in Rsamtools by Pierre Lindenbaum 152k
> But other solutions are also fine: bash, nextflow, snakemake
Answer: samtools markdup in Rsamtools by ATpoint 68k
My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
Comment: To batch correct or analyse separately? by predeus ★ 1.8k
Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
Comment: PLINK2 selecting variants based on INFO score by chrchang523 9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
Comment: phylogeny by 炫 • 0
Hello, my problem is the same as yours, did you finally solve this problem?
Comment: phylogeny by 炫 • 0
您好，我的问题和您的一模一样，请问您这个问题最终解决了吗
Comment: Issue with hmmcalibrate during tutorial. by apcreyes29 • 0
If that's the case then I'll just proceed then. Thank you!
Answer: To batch correct or analyse separately? by ATpoint 68k
Instead of writing that all down I recommend to read the relevant part of the Bioconductor scRNA-seq book (OSCA) which covers the "how's" a…
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