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News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
6 months ago by PeterC_NCBI ▴ 260
0
votes
0
replies
269
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News: Nextflow online training
Nextflow Workflow Reproducibility
updated 5 months ago by 39k • written 6 months ago by ★ 2.3k
0
votes
2
replies
1.0k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
6 months ago by David Langenberger 9.9k
0
votes
0
replies
305
views
News: The Association for Single Cell Analysis (ASCA)
genomics singlecell metabolomics sequencing proteomics
6 months ago by dnsv.ev • 0
0
votes
0
replies
257
views
News: Deep Learning in Population Genomics and Phylogeography
DeepLearning Phylogeography PopulationGenomics
6 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
292
views
News: Metabarcoding in Microbial Ecology Workshop
Qiime2 R Metabarcoding Microbial-Ecology
7 months ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
409
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
268
views
News: Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor RNAseq R
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
382
views
News: Winter School in Bioinformatics
course workshop
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
1
vote
0
replies
344
views
News: Introduction to Nextflow
Nextflow
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
0
votes
2
replies
503
views
News: Seascape Genomics in R
Genomics Seascape R
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
0
votes
0
replies
259
views
News: Bioinformatics courses in November
Bioconductor Genomics R
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
0
votes
0
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472
views
News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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263
views
News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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279
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News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
7 months ago by carlopecoraro2 ★ 2.3k
2
votes
0
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297
views
News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
7 months ago by PeterC_NCBI ▴ 260
0
votes
0
replies
394
views
News: course - Unix and shell scripting for bioinformatics
bash Shell-scripting Unix
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
0
votes
0
replies
305
views
News: course: Data Visualization in Python
Visualisation Python Data
updated 8 months ago by 129k • written 8 months ago by ★ 2.3k
0
votes
0
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287
views
News: Seascape Genomics in R course
Genomics R Seascape Population
8 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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318
views
News: Cellosaurus API
line cell API
8 months ago by Amos Bairoch ▴ 110
0
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0
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300
views
News: Cellosaurus release 43 is available
cellosaurus cell-line
updated 5 months ago by 39k • written 8 months ago by ▴ 110
0
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0
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256
views
News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 5 months ago by 39k • written 8 months ago by • 0
0
votes
0
replies
236
views
News: course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome genomics population low-coverage sequencing
updated 8 months ago by 21k • written 8 months ago by ★ 2.3k
0
votes
0
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237
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News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
8 months ago by David Langenberger 9.9k
0
votes
0
replies
223
views
News: Getting the most out of R course - last call
ggplot2 R tidyverse
8 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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304
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News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 5 months ago by 39k • written 8 months ago by ▴ 10
1
vote
0
replies
278
views
News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
8 months ago by Alexander ▴ 70
1
vote
0
replies
274
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News: course Reproducible Analysis With R
R Reproducibility analysis Data
8 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
294
views
News: Virtual Genome Assembly workshop
Genome Workshop assembly Virtual
8 months ago by singh.vijender ▴ 70
10
votes
4
replies
678
views
News: Good morning
good morning
updated 8 months ago by 98k • written 8 months ago by 85k
6
votes
7
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3.0k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
8 months ago by Rory Stark ★ 1.7k
0
votes
0
replies
319
views
News: Sex Chromosome Evolution course
course Genomics
updated 5 months ago by 39k • written 8 months ago by ★ 2.3k
0
votes
0
replies
267
views
News: Online training - Data visualization in R with ggplot2
Visualization ggplot2 R Data
9 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
340
views
News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
9 months ago by Alexander ▴ 70
0
votes
0
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288
views
News: Online training - Introduction to Deep Learning for biologists
Python DeepLearning bigdata MachineLearning
9 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
443
views
News: 2023 EMBL Courses and Conferences
EMBL EMBLMalaria EESImaging
9 months ago by EMBL Events • 0
0
votes
0
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296
views
News: Online training -Getting the most out of R
R Science analysis Data
9 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
302
views
News: Online training - Cancer Genomics in R
Cancer Genomics R
updated 5 months ago by 39k • written 9 months ago by ★ 2.3k
0
votes
0
replies
286
views
News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
9 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
308
views
News: 3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq Bioconductor R
10 months ago by carlopecoraro2 ★ 2.3k
4
votes
1
reply
2.1k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 8.8 years ago by ★ 2.0k
1
vote
2
replies
610
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
9 months ago by carlopecoraro2 ★ 2.3k
4
votes
1
reply
425
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 10 months ago by 39k • written 10 months ago by 9.9k
0
votes
0
replies
389
views
News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 5 months ago by 39k • written 10 months ago by ▴ 10
0
votes
0
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338
views
News: Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline Nextflow automation
11 months ago by David Langenberger 9.9k
0
votes
1
reply
757
views
News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq Transcriptomics NGS Workshop
11 months ago by David Langenberger 9.9k
0
votes
3
replies
1.0k
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 5 months ago by 39k • written 11 months ago by ▴ 10
0
votes
0
replies
306
views
News: EBI Competency Hub Supporting competency-based training and professional development.
ebi carreer
11 months ago by Pierre Lindenbaum 154k
0
votes
0
replies
298
views
News: Introduction to Statistics in R for biologists
tydeverse R Statistics
11 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
298
views
News: Data analysis with the Tidyverse in July (18th-21st).
Visualization R Tidyverse data-analysis
updated 10 months ago by 39k • written 11 months ago by ★ 2.3k
1,000 results • Page 3 of 20
Recent Votes
Problem with PGDSpider v 2.1.0.2
Comment: Filter VCF file for variant alleles
Help making ADMIXTURE output digestible
Answer: Graphing Average Expression of Group of Genes
Linear models with limma: coefficients not estimatable, are the others OK?
Answer: How to find gene annotation given a position in a bacterial genome
Comment: INSTALLING DEseq2 via conda
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Recent Replies
Answer: Manhattan Plot with independent significant hits by Vincent Laufer ★ 2.8k
Consider using [locuszoom][1] for genomic regions small enough to warrant special clarification that the two associations are independent. …
Comment: Problem with PGDSpider v 2.1.0.2 by sackettl ▴ 20
I have this same problem with version 2.1.1.5. Did you ever find a solution?
Comment: Filter VCF file for variant alleles by Ram 39k
> can't find anything to do this It's in there. If you had looked a little deeper, you would have found - on your own - exactly what Pierr…
Comment: To call variants can I use my aligned WGS data as a reference genome by GenoMax 129k
Then create an alternate Reference with data for the sample: https://gatk.broadinstitute.org/hc/en-us/articles/360037594571-FastaAlternateR…
Comment: Help making ADMIXTURE output digestible by Aaron ▴ 10
You can also check out [pong][1] (README [here][2]), which creates interactive plots with the clusters and colors automatically aligned acr…
Comment: To call variants can I use my aligned WGS data as a reference genome by mls • 0
Yes they are but I wanna compare one of my samples with others , rather S288C.
Comment: To call variants can I use my aligned WGS data as a reference genome by Pierre Lindenbaum 154k
the bam are mapped on S288C fasta isn't it ? why would you need another reference ?
Comment: Filter VCF file for variant alleles by Pierre Lindenbaum 154k
use a filtering expression https://samtools.github.io/bcftools/bcftools.html#expressions , something like; bcftools view -i 'COUNT(GT=…
Comment: Filter VCF file for variant alleles by miguellarrazlopezdenovales • 0
I've tried bcftools, which seems to be the closest I've got, but I can't find anything to do this. I have also found vcftools --max-non-ref…
Comment: Filter VCF file for variant alleles by Ram 39k
What have you tried? You've mentioned bcftools as a tag, have you read the manual?
Comment: How to concatenate multiple fasta file by doggie • 0
@shenwei356 Thank you so much! Your prompt reply helped me a lot!
Answer: PacBio Pipeline and Tools for Variant Call by William Rowell ▴ 250
> What are Quality parameters that should be taken care ( Adapter trim, Reads filter, Min Data size, ) How to trim adapter, What tools to u…
Comment: Ambient RNA expression correction by rpolicastro 12k
Ambient RNA would have the same cell barcode as a valid cell-containing droplet since the RNA gets partitioned into the droplet with the ce…
Comment: Can any one suggest tools that generate "mind-maps" on concepts in biology/biote by Vincent Laufer ★ 2.8k
sorry to be blunt but this question is so broad i worry it may not evoke a cogent answer. you might start by finding a review on the use …
Answer: Can any one suggest tools that generate "mind-maps" on concepts in biology/biote by Jesse ▴ 550
Haven't used it, but I've heard good things about [Obsidian](https://obsidian.md/) as a note-taking tool, and it has [graphing features](ht…
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