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1,000 results • Page
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News:
Introduction to R Shiny course
WebApplications
R
RShiny
16 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
575
views
News:
New version of ElasticBLAST (1.0.0) available.
NCBI
ElasticBLAST
BLAST
16 months ago by
PeterC_NCBI
▴ 410
0
votes
1
reply
548
views
News:
Courses in January - still a few seats available
R-Shiny
Genomics
Unix
R
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
373
views
News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 16 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
496
views
News:
Cellosaurus release 44 is available
cellosaurus
cell-line
updated 16 months ago by
Ram
43k • written 16 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
419
views
News:
Introductory video to the Cellosaurus
cellosaurus
cell-line
updated 16 months ago by
Ram
43k • written 16 months ago by
Amos Bairoch
▴ 120
0
votes
3
replies
1.1k
views
News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 16 months ago by
4galaxy77
2.8k • written 16 months ago by
Pierre Lindenbaum
161k
2
votes
3
replies
715
views
News:
NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser
NCBI
Alignments
Genome
16 months ago by
PeterC_NCBI
▴ 410
1
vote
6
replies
1.2k
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 15 months ago by
synat.keam
▴ 100 • written 16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
340
views
News:
INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography
Paleobiology
R
16 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
369
views
News:
Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics
Cancer-Genomics
R
updated 16 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
565
views
News:
course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads
Assembly
Nanopore
Genome
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
367
views
News:
Online training - VERSION CONTROL FOR RESEARCHERS
Version
Control
Git
Github
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
469
views
News:
Research Training In NGS Data Analysis
analysis
data-analysis
updated 17 months ago by
Ram
43k • written 17 months ago by
RASALSI
• 0
0
votes
0
replies
462
views
News:
Bayesian regression modeling in R course
RegressionModeling
Bayesian
R
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
505
views
News:
Genome Assembly and Annotation course
Annotation
Nanopore
GenomeAssembly
Pacbio
17 months ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
1.2k
views
News:
Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI
Databases
BLAST
17 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
418
views
News:
Nextflow online training
Nextflow
Workflow
Reproducibility
updated 16 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
1.3k
views
News:
:: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq
dnaseq
sequencing
ngs
workshop
17 months ago by
David Langenberger
11k
0
votes
0
replies
518
views
News:
The Association for Single Cell Analysis (ASCA)
genomics
singlecell
metabolomics
sequencing
proteomics
17 months ago by
dnsv.ev
• 0
0
votes
0
replies
461
views
News:
Deep Learning in Population Genomics and Phylogeography
DeepLearning
Phylogeography
PopulationGenomics
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
440
views
News:
Metabarcoding in Microbial Ecology Workshop
Qiime2
R
Metabarcoding
Microbial-Ecology
18 months ago by
carlopecoraro2
★ 2.5k
2
votes
2
replies
657
views
News:
Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis
R
Cancer-Genomics
GSEA
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
395
views
News:
Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor
RNAseq
R
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
599
views
News:
Winter School in Bioinformatics
course
workshop
updated 16 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
475
views
News:
Introduction to Nextflow
Nextflow
updated 16 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
717
views
News:
Seascape Genomics in R
Genomics
Seascape
R
updated 16 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
375
views
News:
Bioinformatics courses in November
Bioconductor
Genomics
R
updated 16 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
886
views
News:
Flow cytometry analysis with R/Bioconductor course
Bioconductor
R
Cytometry
Flow
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
411
views
News:
course: RNA-seq analyses in non-model organisms
differential
Bioconductor
RNAseq
expression
non-model
organisms
analysis
R
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
413
views
News:
course - Developing R/Bioconductor packages for genomics
developing
package
Bioconductor
Genomics
R
19 months ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
471
views
News:
Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics
MagicBLAST
BLAST
NCBI
Primer-BLAST
19 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
641
views
News:
course - Unix and shell scripting for bioinformatics
bash
Shell-scripting
Unix
updated 16 months ago by
Ram
43k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
437
views
News:
course: Data Visualization in Python
Visualisation
Python
Data
updated 19 months ago by
GenoMax
141k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
430
views
News:
Seascape Genomics in R course
Genomics
R
Seascape
Population
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
554
views
News:
Cellosaurus API
line
cell
API
19 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
441
views
News:
Cellosaurus release 43 is available
cellosaurus
cell-line
updated 16 months ago by
Ram
43k • written 19 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
385
views
News:
Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation
genomics
database
webinar
updated 16 months ago by
Ram
43k • written 19 months ago by
Kate
• 0
0
votes
0
replies
363
views
News:
course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome
genomics
population
low-coverage
sequencing
updated 19 months ago by
Jeremy Leipzig
22k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
383
views
News:
:: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq
workshop
transcriptomics
19 months ago by
David Langenberger
11k
0
votes
0
replies
344
views
News:
Getting the most out of R course - last call
ggplot2
R
tidyverse
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
430
views
News:
The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 16 months ago by
Ram
43k • written 19 months ago by
sarah_p
▴ 10
1
vote
0
replies
442
views
News:
Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq
CITE-seq
scRNA-seq
19 months ago by
Alexander
▴ 220
1
vote
0
replies
402
views
News:
course Reproducible Analysis With R
R
Reproducibility
analysis
Data
19 months ago by
carlopecoraro2
★ 2.5k
10
votes
4
replies
987
views
News:
Good morning
good
morning
updated 19 months ago by
Istvan Albert
100k • written 19 months ago by
Kevin Blighe
87k
6
votes
7
replies
4.2k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
19 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
454
views
News:
Sex Chromosome Evolution course
course
Genomics
updated 16 months ago by
Ram
43k • written 20 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
388
views
News:
Online training - Data visualization in R with ggplot2
Visualization
ggplot2
R
Data
20 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
513
views
News:
Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq
CITE-seq
scRNA-seq
20 months ago by
Alexander
▴ 220
0
votes
0
replies
396
views
News:
Online training - Introduction to Deep Learning for biologists
Python
DeepLearning
bigdata
MachineLearning
20 months ago by
carlopecoraro2
★ 2.5k
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Answer: Extract protein sequence
Answer: Extract protein sequence
C: How do I ask a question on Biostars?
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Comment: How to calculate identity percentage between proteins contained in a FASTA file?
Comment: How to calculate identity percentage between proteins contained in a FASTA file?
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Comment: Differential Accessibility
by
Ram
43k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
Comment: Extract protein sequence
by
anna
▴ 20
Thank you! I need this for eukaryotic organism and known protein sequences, but I guess seqkit would work well!
Comment: Landmark gene selection in L1000.
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GenoMax
141k
Paper referred to in question: https://pubmed.ncbi.nlm.nih.gov/29195078/ > so I want to understand how you reduced the 12063 genes to 978…
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@kevin May I know whether your comments and edits were mainly based on the fact that "Previously, [crazy] people had been using the origina…
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★ 2.0k
Wow, I was shocked at this AI answer that looks to be a good start for using UniProt. Sharing it in case it is useful. (It will work in ses…
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴ 570
> Can you clarify what you mean by "100% of reads pass cutadapt, even > though 70% of reads contain adapters and get trimmed. The header o…
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If you have independent information available (e.g. genotype data for both individuals) then you *may* be able to assign reads based on the…
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by
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4.5k
You didn't mention what kind of organism you are working with and what kind of protein you are looking for? If it happens to be a microbia…
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by
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▴ 10
Thank you Gordon for your expertise. One question that I have now that I have a list of DE genes is how to interpret logFC of this continuo…
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by
salias
• 0
Yes I plan to use QIIME2, but I'm Cutadapting outside QIIME so its easier to MultiQC without importing/unzipping QZAs (and QIIME2 importing…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
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141k
> 3' adapters were removed aprox. 90 times each one, so there sohuld not be read-through at all here Then you have data that has poor Q sc…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
salias
• 0
Following your advice, I checked the primer and adapters sequences and edited the question accordingly
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We can't phase them out per se, because ``kallisto index`` is still the engine responsible for creating the index under the hood (and there…
Comment: When to use .vcf or .gvcf files from GATK HaplotypeCaller?
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Medhat
9.7k
"./." in your gVCF files typically indicates a lack of information or uncertainty about the genotype at that particular position. This co…
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