2
votes
5
replies
722
views
2
votes
5
replies
684
views
1
vote
0
replies
678
views
updated 15 days ago by
Ram
43k
•
written 5.2 years ago by
Sebastian Hesse
▴
340
1
vote
1
reply
662
views
updated 15 days ago by
Ram
43k
•
written 4.4 years ago by
s.lima.diogenes
▴
10
0
votes
1
reply
659
views
2
votes
2
replies
635
views
0
votes
6
replies
619
views
0
votes
4
replies
618
views
0
votes
9
replies
613
views
1
vote
1
reply
600
views
updated 21 days ago by
Ram
43k
•
written 3.3 years ago by
ramin.k2013
•
0
0
votes
0
replies
597
views
4
votes
9
replies
590
views
updated 29 days ago by
Ram
43k
•
written 4 weeks ago by
dalibenam64
•
0
4
votes
7
replies
582
views
0
votes
6
replies
581
views
0
votes
2
replies
581
views
0
votes
2
replies
568
views
0
votes
5
replies
566
views
0
votes
0
replies
565
views
0
votes
11
replies
563
views
0
votes
2
replies
558
views
0
votes
1
reply
554
views
1
vote
0
replies
546
views
0
votes
4
replies
543
views
14 days ago by
feather-W
•
0
0
votes
1
reply
543
views
2
votes
5
replies
517
views
0
votes
5
replies
509
views
26 days ago by
marongiu.luigi
▴
710
3
votes
3
replies
500
views
0
votes
1
reply
492
views
updated 7 days ago by
ginellegrenier
•
0
•
written 4 months ago by
Clayton
•
0
0
votes
6
replies
482
views
22 days ago by
marongiu.luigi
▴
710
0
votes
0
replies
480
views
updated 21 days ago by
Ram
43k
•
written 2.1 years ago by
ramin.k2013
•
0
0
votes
10
replies
479
views
2
votes
5
replies
479
views
1
vote
1
reply
475
views
updated 24 days ago by
chrchang523
10k
•
written 24 days ago by
dsbusiness135
▴
10
1
vote
1
reply
470
views
0
votes
6
replies
460
views
0
votes
0
replies
450
views
0
votes
2
replies
443
views
13 days ago by
_quantum_girl_
▴
10
0
votes
2
replies
441
views
13 days ago by
Ashok
•
0
1
vote
8
replies
437
views
2 days ago by
marco.barr
▴
90
1
vote
1
reply
434
views
updated 11 days ago by
Gordon Smyth
★
7.1k
•
written 14 days ago by
Chris
▴
260
2
votes
6
replies
434
views
23 days ago by
jkim
▴
170
1
vote
1
reply
418
views
0
votes
7
replies
418
views
2
votes
4
replies
415
views
updated 22 days ago by
GenoMax
142k
•
written 23 days ago by
pl.terzian
•
0
0
votes
0
replies
415
views
updated 27 days ago by
Ram
43k
•
written 21 months ago by
vahe.galstyan
•
0
1
vote
4
replies
414
views
updated 19 days ago by
BioinfGuru
★
1.7k
•
written 20 days ago by
Morteza
•
0
0
votes
5
replies
412
views
0
votes
1
reply
410
views
1
vote
3
replies
409
views
updated 24 days ago by
Ram
43k
•
written 26 days ago by
catherinemaria2728
•
0
0
votes
0
replies
406
views
Recent Votes
Recent Locations •
All
United States, 2 minutes ago
Mexico, 3 minutes ago
United States, 5 minutes ago
United States, 6 minutes ago
United States, 6 minutes ago
United States, 7 minutes ago
United States, 8 minutes ago
Recent Awards •
All
Popular Question to
hafiz.talhamalik
▴
350
Popular Question to
Hayler Edu
▴
40
Popular Question to
eesiribloom
▴
80
Popular Question to
g.persic1991
•
0
Popular Question to
massa.kassa.sc3na
▴
600
Teacher to
shenwei356
8.5k
Popular Question to
Apex92
▴
280
Recent Replies
Answer: RNA-seq data for deep learning classification
by
dsull
★
5.9k
Honestly speaking, if it's deep learning, it probably doesn't matter that much if you use something like TPMs (probably not raw counts, unl…
Comment: How does gene length effect the number of reads mapped
by
Chen
•
0
Thanks for the detailed answer and I really appreciate it! I still have one question about why the number of reads can be influenced by the…
Comment: Split Fastq Files Into Chunks Of 1M Reads
by
thomas.heigl.ibk
•
0
i tried it. it splits, however, when i compare the first 8 lines of the second split file with the according lines from the original file, …
Comment: DiffBind: no peaks in DBA
by
Ram
43k
> I've also included the txt version of my .csv file
No, you added a screenshot of plain text content, which is counterproductive. You can…
Comment: How to access TCGA samples that were treated with a specific drug?
by
GenoMax
142k
At the GDC portal you have to turn the "therapeutic agents" toggle under "Clinical Data Analysis" on.
![drug][1]
For Breast cancer you c…
Answer: Loss of 'var' using concatenation of AnnData objects
by
Hugo
•
0
Similar question has been asked and answered on [scverse discourse](https://discourse.scverse.org/t/loosing-anndata-var-layer-when-using-sc…
Comment: Bacterial plasmid analysis
by
Zamin Iqbal
▴
20
Hi Nicole.
1. The clustering will be quite different between pling and the rep types (because plasmids with one rep type can still be ve…
Comment: Do I need to go back and filter my long-reads?
by
Ram
43k
Do not delete posts that have received feedback. Engage with the user providing you feedback.
Answer: Download eQTL data of one specific gene for all tissues from GTEx
by
bk11
★
2.4k
Please kindly check your result here. You can click `csv` and download the date in this [link][1].
**OR**
If you prefer to use R, there i…
Comment: RNAseq one control two conditions, shared and exclusive genes
by
matteo.levorato
•
0
but why not a single matrix with the 3 different condition and then by lfcShrink function get the DEGs of each condition?
Answer: Super ehancers
by
jared.andrews07
★
16k
Sure, you can run it on them. Stitching tends to happen less frequently since the ATAC peaks are generally less wide than H3K27ac, but it'l…
Answer: What purposes can TPM values be used for?
by
jared.andrews07
★
16k
TPMs cannot be used for intersample comparisons, but they can be used for intrasample comparisons (e.g. comparing relative expression level…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
•
0
Thank you so much for the recommendation and the very clear explanation , it's much appreciated. I have already made core-gene phylogenies/…
Comment: What purposes can TPM values be used for?
by
Adam
▴
30
Have you run FASTQC and checked the mapping efficiency of WT3?
> would running DESeq using TPM values help solve my problem?
No, DESeq sh…
Answer: How goes gene length effect the number of reads mapped
by
i.sudbery
19k
See my answer about the what hows and whens of RNA-seq normalisation here:
https://www.biostars.org/p/9586553/#9586566
Traffic: 2645 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6