0
votes
9
replies
2.5k
views
6 follow
1
vote
3
replies
2.5k
views
updated 6 days ago by
chrchang523
10k
•
written 6.1 years ago by
Ginevra
▴
10
2
votes
9
replies
850
views
0
votes
11
replies
525
views
0
votes
0
replies
481
views
0
votes
1
reply
477
views
updated 3 days ago by
ginellegrenier
•
0
•
written 4 months ago by
Clayton
•
0
0
votes
6
replies
444
views
0
votes
8
replies
338
views
0
votes
7
replies
338
views
0
votes
5
replies
335
views
updated 3 days ago by
GenoMax
141k
•
written 4 days ago by
Bertalan_Takacs
▴
90
1
vote
3
replies
331
views
0
votes
5
replies
331
views
updated 1 day ago by
Istvan Albert
100k
•
written 5 days ago by
sehriban.buyukkilic
▴
10
0
votes
5
replies
322
views
1
vote
6
replies
305
views
2 hours ago by
marco.barr
▴
80
0
votes
0
replies
304
views
2
votes
4
replies
290
views
0
votes
3
replies
278
views
0
votes
0
replies
276
views
1
vote
3
replies
269
views
5 days ago by
Art1ess
•
0
0
votes
2
replies
251
views
updated 4 days ago by
Ram
43k
•
written 5 days ago by
v.berriosfarias
▴
140
0
votes
2
replies
247
views
1
vote
3
replies
235
views
1
vote
3
replies
232
views
1
vote
2
replies
224
views
4 days ago by
ahmad.sajad4541
•
0
0
votes
1
reply
207
views
updated 3 days ago by
ATpoint
82k
•
written 3 days ago by
AaronJaime
•
0
0
votes
0
replies
206
views
0
votes
0
replies
199
views
0
votes
0
replies
188
views
1
vote
1
reply
175
views
0
votes
0
replies
168
views
0
votes
0
replies
164
views
0
votes
1
reply
165
views
0
votes
0
replies
164
views
0
votes
1
reply
162
views
updated 5 days ago by
bk11
★
2.4k
•
written 5 days ago by
alphaflylizard
•
0
1
vote
0
replies
162
views
0
votes
0
replies
157
views
0
votes
1
reply
157
views
0
votes
1
reply
154
views
updated 5 days ago by
Mensur Dlakic
★
27k
•
written 5 days ago by
benguyarenbeyaz98
•
0
0
votes
0
replies
154
views
0
votes
1
reply
153
views
updated 4 days ago by
Sofia
•
0
•
written 4 days ago by
mawigoj318
•
0
0
votes
0
replies
150
views
3 days ago by
Emily
▴
10
0
votes
1
reply
148
views
updated 6 days ago by
Ram
43k
•
written 6 days ago by
Cameron.walker9900
•
0
0
votes
1
reply
148
views
updated 5 days ago by
bk11
★
2.4k
•
written 6 days ago by
Susmita Mandal
▴
110
0
votes
0
replies
148
views
3 days ago by
synat.keam
▴
100
0
votes
0
replies
148
views
1
vote
0
replies
146
views
0
votes
0
replies
146
views
0
votes
0
replies
145
views
2
votes
2
replies
139
views
0
votes
0
replies
139
views
5 days ago by
salias
•
0
Recent Votes
Recent Locations •
All
Belgium, just now
Portugal, 1 minute ago
Germany, 1 minute ago
India, 2 minutes ago
EMBL-EBI, 2 minutes ago
Bologna, 4 minutes ago
Germany, 6 minutes ago
Recent Awards •
All
Popular Question to
SaltedPork
▴
170
Popular Question to
christopher medway
▴
450
Popular Question to
Mohita
▴
50
Popular Question to
Zhenyu Zhang
★
1.2k
Popular Question to
WUSCHEL
▴
750
Teacher to
Mensur Dlakic
★
27k
Teacher to
Jeremy Leipzig
22k
Recent Replies
Answer: Limma Analysis Agilent Microarray Data (GPL1708)
by
hagl
▴
10
Thank you very much for the response. Following your recommendation in pursuing option one by selecting highest expressions and subsequent …
Answer: RNAseq one control two conditions, shared and exclusive genes
by
Mohamed Abderrahmane
▴
20
I think it would be pertinent to use DESEq2 to perform two comparisons: the first one between the control group and condition 1, and the se…
Comment: Longitudinal analysis of subpopulations: which approach is better?
by
Lluís R.
★
1.2k
Many thanks for the helpful comment. Indeed, I read some of them, but I was not fully convinced and I missed the link FAQ of DESeq2. The re…
Comment: Longitudinal analysis of subpopulations: which approach is better?
by
ATpoint
82k
Keeping data together is most powerful and most convenient as you have a single analysis object and a single count matrix. I would always d…
Comment: Questions about a bug when transferring cram file to bam file
by
jkbonfield
★
1.2k
Assuming you have network access and the md5sum is registered with the EBI's reference server, yes - it'll be downloaded and cached locally.
Comment: Downsampling fastq file
by
marco.barr
▴
80
I followed your advice and it seems that I'm getting results comparable to what I was getting before. Upon checking with `wc -l` on the ori…
Comment: Finding batch and outlayers
by
christopher medway
▴
450
You could perform an ANOVA to test if there is a significant association between batch number and a given Principal Component
Comment: ChIP-seq datasets: input samples omitted?
by
i.sudbery
19k
Fascinating!
We also use inputs when doing metagene to protect against those situations where regions up or downstream of our metagene al…
Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix)?
by
i.sudbery
19k
See the section on non full rank design matrices in the DESeq2 manual.
In this case your problem is that healthy and 0dpi samples are e…
Comment: NGS forensics: how to know if data is fabricated
by
i.sudbery
19k
Can you clarify what you mean by "100% of reads pass cutadapt, even though 70% of reads contain adapters and get trimmed. " did you set a m…
Comment: NGS forensics: how to know if data is fabricated
by
i.sudbery
19k
I don't follow your argument for distinguishing between genomic contamination and freud. A data set being bad in terms of genomic contamin…
Comment: What does it mean single base resolution in sequencing?
by
jinyu
▴
10
Thank you for your detail and great explanation. I do need more time to understand these. And there is still something compuzzling me. For …
Answer: Is it possible to bulk download files from GEO repository?
by
atharvakarkare14
▴
10
Try using this library [GEOparse][1]
[1]: https://github.com/guma44/GEOparse
Answer: How many reads for WGS Sequencing?
by
Ruqaiya
•
0
OK. Problem solved. The problem was from my end.
Thank you both for helping !!
Comment: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★
27k
Appreciate the suggestion, but that ship has sailed and reached the other shore. This happened 10+ years ago. To the best of my knowledge n…
Traffic: 2523 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6