Limit : this year
all time today this week this month this year
1,000 results • Page 4 of 20
Sort: Rank
Rank Views Votes Replies
0
votes
0
replies
256
views
Assist me in determining whether the analysis process using the limma package has been executed correctly
limma ArrayExpress DifferentialExpression GEOquery
14 days ago by SSSJec • 0
0
votes
3
replies
241
views
Software to separate reads from different individuals
software development nanopore
updated 14 days ago by 142k • written 14 days ago by ▴ 20
0
votes
2
replies
317
views
How to update R on ubuntu
installation update R apt-get
14 days ago by Bosberg ▴ 50
0
votes
0
replies
119
views
LEfSe
LEfSe
15 days ago by benkosta • 0
0
votes
0
replies
96
views
How should I handle read counts derived from SGSeq when I want to build DEXSeqDataSet object
DEXSeq DEXSeqDataSet SGSeq
15 days ago by Sara ▴ 30
0
votes
2
replies
179
views
Longitudinal analysis of subpopulations: which approach is better?
differential-expression DEG model
15 days ago by Lluís R. ★ 1.2k
0
votes
0
replies
111
views
Comparing peptide sequences with MS/MS peptide data using MaxQuant
Transcriptomics Mass-spectrometry Proteins
updated 15 hours ago by 43k • written 15 days ago by ▴ 30
0
votes
2
replies
225
views
What should I consider as FASTA for dataset?
PDB FASTA
14 days ago by Nafi • 0
0
votes
0
replies
601
views
Differential accessibility using DiffBinf
diffbind
15 days ago by Shloka • 0
0
votes
0
replies
105
views
vg call vs vg surject
vg variation graphs
updated 15 days ago by 142k • written 15 days ago by • 0
0
votes
1
reply
229
views
Finding batch and outlayers
Pca
updated 15 days ago by ▴ 460 • written 15 days ago by • 0
2
votes
2
replies
230
views
PDB related issue
rcsb pdb
updated 15 days ago by ▴ 580 • written 15 days ago by • 0
0
votes
9
replies
2.6k
views
6 follow
Cannot process all the reads in a fast5 file?
metagenome base-calling fastq nanopore
updated 15 days ago by 43k • written 8 months ago by • 0
1
vote
2
replies
264
views
Downloading full alignments from Pfam
pfam
9 days ago by bef1 • 0
0
votes
0
replies
136
views
adjusting for confounders in LMER in R
confounders LMER R
updated 14 days ago by 14k • written 16 days ago by ▴ 20
1
vote
3
replies
361
views
How to assign cell types after integration in scRNA
scRNA-seq
updated 15 days ago by 82k • written 16 days ago by ▴ 10
0
votes
0
replies
151
views
STAR total splices (in Log.final) vs collapsed splice junctions (in SJ.out.tab)
STAR
16 days ago by tnminh89 ▴ 10
0
votes
0
replies
157
views
Filter low express genes in microarray data
microarray
16 days ago by Chris ▴ 280
0
votes
0
replies
584
views
Correlation between cell type prediction scores and individual gene expression in spatial transcriptomic datasets
single-cell Spatial-Transcriptomics
17 days ago by biocellbio • 0
0
votes
0
replies
219
views
Phasing VCF Files and Analyzing Reads with Multiple Variants
haplotypes vcf phasing
18 days ago by HarperReed • 0
1
vote
0
replies
170
views
Simulation of label-free bottom-up proteomics expression dataset
label-free bottom-up lc-ms proteomics
18 days ago by KABILAN ▴ 70
0
votes
0
replies
189
views
Running Phylogenetic Analysis With NCBI Genome
population-genetics phylogenetic
updated 17 days ago by 43k • written 18 days ago by • 0
0
votes
0
replies
189
views
RNA-seq: full length gene
RNA-seq
updated 17 days ago by 43k • written 18 days ago by • 0
0
votes
0
replies
169
views
Haplotype Phased Assembly Contigs to Chromosome Annotations
Assembly phased Haplotype Annotation
18 days ago by turcoa1 • 0
0
votes
0
replies
181
views
Designing single-stable RNA molecules
structure RNA
18 days ago by Edna • 0
0
votes
0
replies
192
views
How to visualize/predict the final transcript from Delly output?
WGS DELLY
18 days ago by simplitia ▴ 130
1
vote
1
reply
260
views
Normalize scRNAseq data to housekeeping genes to compare several datasets
RNA-sequencing housekeeping Single-cell normalization
updated 18 days ago by 82k • written 18 days ago by • 0
0
votes
0
replies
176
views
How to calculate correlation coefficient for chipseq?
chipseq bigwigsummary deeptools correlation
9 hours ago by Emily ▴ 20
1
vote
0
replies
189
views
How to calculate reliable Ka/Ks or dN/dS ratio for genes of interest from VCF file
dnds kaks VCF
18 days ago by rohitsatyam102 ▴ 860
0
votes
0
replies
172
views
how to read graph_test output of monocle 3
monocle3
18 days ago by synat.keam ▴ 100
0
votes
1
reply
529
views
GAPIT p-value significance threshold
GAPIT p-value GWAS
updated 18 days ago by • 0 • written 5 months ago by • 0
0
votes
0
replies
171
views
Why not use iBAQ for calculating differential abundance of proteins?
protein maxquant
19 days ago by Aspire ▴ 330
0
votes
4
replies
404
views
Highest variable features in single cell data
single-cell
7 days ago by carolofharvest ▴ 40
1
vote
3
replies
441
views
PCA plot
DESeq2 PCAplot
updated 15 days ago by 4.2k • written 19 days ago by ▴ 10
0
votes
0
replies
167
views
Can you give me an example of a small globular protein (PDB) that has disordered alpha-carbons?
protein pdb alpha-carbon
19 days ago by 4fzcgueyp5 • 0
0
votes
2
replies
307
views
Annovar using R package
Annovar gnomAD R
18 days ago by DKA ▴ 40
0
votes
5
replies
432
views
Is it possible to get a list of representative genomes from a past RefSeq release?
representative ncbi asembly refseq
updated 19 days ago by 142k • written 19 days ago by ▴ 90
0
votes
0
replies
166
views
One error problem occurred caused by data type during using GDCprepare to handle BRCA data
TCGA GDCprepare
updated 19 days ago by 43k • written 19 days ago by • 0
0
votes
0
replies
326
views
roary not working with pgap output gff files with fasta sequence but works with prokka's gff outputs
pangenome PGAP NCBI roary Prokka
19 days ago by pramach1 ▴ 40
0
votes
1
reply
201
views
GEMMA GWAS how to specify factor or numerical for covariates
covariate GEMMA GWAS
updated 19 days ago by • 0 • written 20 days ago by • 0
0
votes
0
replies
165
views
Sequence BLAST in plus/minus and plus/plus
blast CRISPR strand sequencing
20 days ago by salias • 0
0
votes
5
replies
448
views
different FeatureCounts output for the same data
fpkm Counts Rsubread rna-seq
updated 16 days ago by 100k • written 20 days ago by ▴ 10
0
votes
0
replies
140
views
Alternative splicing analysis using SUPPA tool - how to normalise counts?
rna-seq single-cell suppa alternative-splicing
updated 19 days ago by 43k • written 20 days ago by • 0
1
vote
2
replies
276
views
alignment result
RNA-seq samtools hisat2
19 days ago by ahmad.sajad4541 • 0
0
votes
0
replies
137
views
AttributeError: module 'scvelo' has no attribute 'pp
loomfile scvelo scipy annData numpy
20 days ago by Kash ▴ 110
0
votes
1
reply
188
views
How to solve this RoseTTAFold colaboratory error?
modeling Google Colaboratory RoseTTAFold protein
updated 20 days ago by ★ 27k • written 20 days ago by • 0
2
votes
2
replies
331
views
How to calculate identity percentage between proteins contained in a FASTA file?
protein FASTA alignment
updated 19 days ago by 43k • written 20 days ago by ▴ 140
2
votes
9
replies
931
views
TCGA2STAT Error: Firehose connection
FIREHOSE TCGA
updated 20 days ago by 4.2k • written 7 months ago by • 0
0
votes
11
replies
695
views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
STARSolo scRNA-seq STAR snRNA-seq MGI
18 days ago by atowns21 • 0
0
votes
1
reply
207
views
Find subcluster under a cluster, find differential genes in one cluster between 2 samples??
clustering subclustering scRNAseq
updated 20 days ago by ★ 2.4k • written 20 days ago by • 0
1,000 results • Page 4 of 20
Recent Votes
A: GC bias correction for Chip-SEQ
Comment: Help with IGV abbreviation
A: How to get read counts on transcript level using featurecounts?
Answer: Vcf file sorting
Answer: How to interpret infinite odds ratio?
Answer: Is there any way to modify this pie chart ?
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
Recent Locations • All
Moscow, just now
Germany, just now
Sheffield, UK, just now
France/Nantes/Institut du Thorax - INSERM UMR1087, just now
Spain, just now
Sweden, 1 minute ago
United States, 2 minutes ago
Recent Awards • All
Popular Question to nhaus ▴ 360
Popular Question to sarahmanderni ▴ 100
Popular Question to O.rka ▴ 720
Popular Question to jiyoung ▴ 20
Autobiographer to Jeol ▴ 20
Popular Question to Pegasus ▴ 100
Popular Question to RNAseqer ▴ 270
Recent Replies
Comment: How to access GWAVA software of data by GenoMax 142k
Please email the author (grsr at ebi.ac.uk) and let them know that the link above is not available.
Comment: CNVKIT - unable to produce scatter and diagram pdfs by Anitha • 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Comment: CNVkit for somatic copy number detection by Anitha • 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Comment: CNVkit for somatic copy number detection by Anitha • 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Answer: Overlapping Ranges within Granges object by ATpoint 82k
There is no one-hit function in GenomicRanges, but you can stick something together using a combination of `findOverlaps` to first find ove…
Comment: Galaxy StringTie error by trkfs • 0
Hi, I did not encounter any " \ - " characters in the fastq input files, and it doesn't seem to be present in any other files either. Thank…
Comment: How to interpret infinite odds ratio? by Lukas • 0
Thanks you for your answer. But according that links interpretation of inf odds ratio is up to hypothesis of the researcher.So my solution …
Comment: How to access GWAVA software of data by nonaddldy ▴ 10
Not found in https://ftp.sanger.ac.uk/resources/software/gwava/ ![][1] [1]: /media/images/f69695ec-e047-44f6-95ce-cd4edf1c
Comment: How to access GWAVA software of data by nonaddldy ▴ 10
https://www.sanger.ac.uk/tool/gwava/
Comment: Is it necessary to do genotype quality filteration after snp calling with GATK by IdaHao0921 • 0
The species I study is not a model species, VQSR can not be applied here. I already used gatk hard-filtering. I mean, after hard-filtering,…
Answer: Overlapping Ranges within Granges object by Alex Reynolds 35k
If you're not tied to Granges, you could use `bedmap --fraction-both 0.1` to require at least 10% overlap between reference and map regions…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Vijith ▴ 30
By doing some online search, I tried installing one module `cpan Bio::DB::Fasta` and it is running like a never-ending installation process…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Vijith ▴ 30
I have tried installing AGAT. But it failed the tests. …
Comment: BWA alignment by ATpoint 82k
That is not what the logs above tell, but good you solved it.
Answer: Inquiry about deseq2 transformation by ATpoint 82k
The transformations first correct for sequencing depth (and [composition][1]) and then apply the variance stabilization / regularization. N…
Traffic: 2835 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6