9
votes
16
replies
673
views
2
votes
8
replies
580
views
1
vote
6
replies
486
views
2
votes
6
replies
2.1k
views
updated 4 days ago by
shaileshdesai76
•
0
•
written 6.8 years ago by
kspata
▴
80
1
vote
6
replies
247
views
0
votes
6
replies
491
views
1
vote
4
replies
217
views
1
vote
4
replies
290
views
4 days ago by
anasjamshed
▴
120
0
votes
4
replies
224
views
0
votes
4
replies
235
views
updated 1 day ago by
Istvan Albert
99k
•
written 1 day ago by
HERMAN
▴
10
1
vote
3
replies
2.2k
views
updated 6 days ago by
ayaosama2111
▴
10
•
written 7.0 years ago by
Nicolas Rosewick
10k
0
votes
3
replies
266
views
0
votes
3
replies
1.0k
views
0
votes
3
replies
211
views
0
votes
3
replies
331
views
updated 3 days ago by
ATpoint
78k
•
written 4 days ago by
manuelmourato25
•
0
0
votes
3
replies
115
views
1
vote
3
replies
150
views
0
votes
3
replies
295
views
0
votes
3
replies
279
views
1
vote
3
replies
201
views
0
votes
2
replies
1.4k
views
updated 1 hour ago by
jiyoung
▴
20
•
written 7 months ago by
Hayler Edu
▴
30
3
votes
2
replies
231
views
0
votes
2
replies
254
views
1
vote
2
replies
190
views
updated 5 days ago by
WouterDeCoster
47k
•
written 6 days ago by
manaswiniparija3
▴
10
1
vote
2
replies
280
views
0
votes
2
replies
264
views
updated 5 days ago by
Raony Guimarães
★
1.3k
•
written 5 days ago by
ThePlaintiff
▴
80
5
votes
2
replies
235
views
4 days ago by
Rafael Soler
★
1.2k
2
votes
2
replies
571
views
6 follow
updated 1 day ago by
e.r.zakiev
▴
170
•
written 5 months ago by
Assa Yeroslaviz
★
1.8k
0
votes
2
replies
196
views
updated 1 day ago by
Arup Ghosh
3.2k
•
written 7 days ago by
vasudhapai
•
0
0
votes
2
replies
271
views
0
votes
2
replies
158
views
0
votes
1
reply
234
views
0
votes
1
reply
132
views
updated 6 days ago by
biofalconch
★
1.1k
•
written 6 days ago by
Emilija
•
0
0
votes
1
reply
110
views
0
votes
1
reply
88
views
2
votes
1
reply
118
views
2
votes
1
reply
222
views
updated 18 hours ago by
Kevin Blighe
86k
•
written 2 days ago by
jabbari.parnian
▴
30
1
vote
1
reply
226
views
6 days ago by
Lukas
▴
40
1
vote
1
reply
148
views
updated 2 days ago by
Basti
★
1.8k
•
written 2 days ago by
a.basitkhan1990
▴
30
0
votes
1
reply
181
views
updated 1 day ago by
Arup Ghosh
3.2k
•
written 3 days ago by
Mehwish
▴
10
1
vote
1
reply
516
views
1
vote
1
reply
839
views
updated 6 days ago by
miguellarrazlopezdenovales
▴
20
•
written 10 months ago by
piotto
▴
20
0
votes
1
reply
230
views
0
votes
0
replies
68
views
1 day ago by
hellokwmin
•
0
1
vote
0
replies
134
views
0
votes
0
replies
71
views
0
votes
0
replies
32
views
2 hours ago by
applepie
•
0
0
votes
0
replies
106
views
0
votes
0
replies
812
views
0
votes
0
replies
59
views
Recent Votes
Recent Locations •
All
Chengdu, 3 minutes ago
Ramat Gan, 4 minutes ago
WCIP | Glasgow | UK, 8 minutes ago
France, 13 minutes ago
United States, 13 minutes ago
Hong Kong, 14 minutes ago
Frankrike, 14 minutes ago
Recent Awards •
All
Popular Question to
applepie
•
0
Popular Question to
saipra003
▴
10
Popular Question to
O.rka
▴
710
Popular Question to
Daniel
▴
30
Popular Question to
prasundutta87
▴
660
Popular Question to
RNAseqer
▴
250
Scholar to
Devon Ryan
104k
Recent Replies
Comment: AttributeError: module 'collections' has no attribute 'Hashable'
by
jiyoung
▴
20
Currently I am experiencing the same problem. Have you solved this?
Comment: Help doing differential expression analysis -experimental design and gProfiler T
by
rajabolacuan
•
0
Good Information Sir
Answer: Viral genes not showing up in combined mouse+virus alignment
by
cook.675
▴
200
Hello I was curious to follow up and wonder if anyone knew why the viral genes are not showing up in the count matrix? I can't seem to solv…
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
CTLong
▴
10
That makes sense. Thanks for the reminder.
Comment: bwa mem hangs after a few thousand reads
by
GenoMax
136k
Then you probably are best served by talking with your local sys admins to see where the issue may be.
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
GenoMax
136k
> even if tpe and tbo are trailing after adapter and quality trimming
Priority/order of operations in coded in the program. Brian will be …
Comment: bwa mem hangs after a few thousand reads
by
cee28
•
0
Actually, I originally did both of those things that you suggested. My original command at the top of the post was submitted to our cluster…
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
CTLong
▴
10
The number of bases is still different even if `tpe` and `tbo` are trailing after adapter and quality trimming. So far for the RNA-seq proj…
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
GenoMax
136k
No there should not be much impact unless one of the reads has become substantially short compared to its mate. Strictly speaking you don't…
Comment: bwa mem hangs after a few thousand reads
by
GenoMax
136k
> I am running this on a HPC cluster.
This is a guess but if you are actually running this on a cluster then it is possible that you need …
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
CTLong
▴
10
Thanks GenoMax for the reply. That being said, does this difference in total bases between read1 and read2 have an effect in subsequent rea…
Comment: CHIPSEQ : Cut AND Run , DiffBind Parameters
by
DINESHR
•
0
Here are my PCA results plotted through Diffbind and Correlation heat map by deeptools shows some clustering in the samples @atpoint
version 2.3.6
version 2.3.6