Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this month
all time
today
this week
this month
this year
492 results • Page
3 of 10
Sort: Views
Rank
Views
Votes
Replies
0
votes
1
reply
754
views
Low SNP Overlap with Michigan 1KG and TopMed reference panel
Michigan-Server
Phasing
TopMed
updated 26 days ago by
Ram
43k • written 12 months ago by
berndmann
▴ 10
0
votes
0
replies
735
views
Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
RNA-Seq
scRNA-Seq
batch-effect
updated 10 days ago by
Ram
43k • written 3.4 years ago by
hkarakurt
▴ 180
0
votes
0
replies
734
views
"No group or design set" with deAna() function in EnrichmentBrowser package
RNA-Seq
R
EnrichmentBrowser
updated 12 days ago by
Ram
43k • written 4.1 years ago by
yxswhx
• 0
8
votes
10
replies
720
views
bash script
whole-genome-sequencing
updated 13 days ago by
Ram
43k • written 20 days ago by
bestone
▴ 30
2
votes
5
replies
700
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 8 days ago by
Jesse
▴ 740 • written 9 days ago by
Ann
★ 2.4k
1
vote
0
replies
676
views
Conditions for valid batch effect correction
r
batch-effect
updated 12 days ago by
Ram
43k • written 5.2 years ago by
Sebastian Hesse
▴ 340
2
votes
5
replies
674
views
samtools mpileup taking too long
Bam
samtools
sam
alignment
updated 23 days ago by
Ram
43k • written 6 weeks ago by
K
• 0
1
vote
1
reply
660
views
Save experiment with batch effects - Protein microarray
statistics
protein-array
batch-effect
updated 12 days ago by
Ram
43k • written 4.4 years ago by
s.lima.diogenes
▴ 10
0
votes
1
reply
659
views
How to fix FreeBayes error "unable to find FASTA index entry for bed files"
freebayes
variant-calling
RNA-Seq
updated 26 days ago by
Ram
43k • written 13 months ago by
wlei091226
• 0
0
votes
1
reply
657
views
How to find the co ordinates of long reads (simulated by Badreads) with respect to the reference genome
long-reads
reference-genome
assembly
updated 23 days ago by
Ram
43k • written 2.7 years ago by
Ashi
▴ 20
0
votes
0
replies
651
views
METAL GWAS
allele-frequency
gwas
updated 26 days ago by
Ram
43k • written 2.4 years ago by
晗颖
• 0
0
votes
10
replies
643
views
Nextflow ERROR : Timeout waiting for connection from pool
nextflow
28 days ago by
dzisis1986
▴ 70
2
votes
6
replies
643
views
Overlapping and merging ChIP-seq peaks
MACS2
HOMER
ChIP-seq
peak-calling
updated 26 days ago by
Ram
43k • written 4 months ago by
zea
• 0
2
votes
2
replies
631
views
Batch correction for DE analysis
batch-correction
mRNA
RNA-seq
DEGs
MDSplot
updated 12 days ago by
Ram
43k • written 2.6 years ago by
Yoonji
▴ 10
0
votes
2
replies
625
views
Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal Precursors in In Silico Study
mirdeep2
maturebayes
microrna
updated 26 days ago by
Ram
43k • written 12 months ago by
Beatriz
• 0
0
votes
3
replies
624
views
Not all variants are annotated with AF - expected or a problem?
Variant-Calling
WGS
Alignment
updated 26 days ago by
Ram
43k • written 7 months ago by
Luiz
▴ 30
0
votes
0
replies
624
views
I performed Homer's annotatePeaks.pl on multiple tissues, yet when I run annotatePeaks on the merged tissues, I get fewer total annotated peaks. Is t…
Homer
ATACseq
29 days ago by
Ronin
• 0
0
votes
6
replies
617
views
Best practices for differential expression analysis with low-yield Nanopore/ONT direct cDNA data?
differential-expression
RNA-Seq
ONT
Nanopore
updated 19 days ago by
Ram
43k • written 5 months ago by
tw_140
• 0
1
vote
1
reply
599
views
accessing the global gut microbial gene catalogue (MEDUSA)
medusa
gene-catalogue
gut-microbiome
updated 17 days ago by
Ram
43k • written 3.2 years ago by
ramin.k2013
• 0
0
votes
9
replies
597
views
99.9999% of Q30 bases is normal?
RNA-seq
fastp
updated 17 days ago by
LauferVA
4.2k • written 18 days ago by
Aki
▴ 20
0
votes
0
replies
593
views
Avoid genome circularization with Canu assembler
circularization
ONT
Canu
repetitive-regions
assembler
updated 23 days ago by
Ram
43k • written 2.9 years ago by
Maria
• 0
0
votes
4
replies
588
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
10 days ago by
Kai Xin
• 0
4
votes
9
replies
582
views
variant calling
variant-calling
updated 25 days ago by
Ram
43k • written 26 days ago by
dalibenam64
• 0
0
votes
2
replies
580
views
Bacterial contamination in human DNA sample
Long-read-sequencing
Bacterial-contamination
updated 23 days ago by
Ram
43k • written 22 months ago by
priya.bmg
▴ 60
4
votes
7
replies
579
views
Can any JBrowse2 tracks show multiple colors for reads at different nucleotide positions?
JBrowse
JBrowse2
updated 27 days ago by
cmdcolin
★ 3.8k • written 4 weeks ago by
I0110
▴ 140
3
votes
12
replies
567
views
struggle to get fasta files from ucsc goldenPath
ucsc
getfasta
fasta
26 days ago by
Lila M
★ 1.2k
4
votes
7
replies
566
views
DESeq2 Multifactor Design
RNA-seq
DESeq2
updated 15 days ago by
Ram
43k • written 16 days ago by
AHerik
▴ 20
0
votes
6
replies
558
views
PacBio adapters in transcriptome assembly from short read data?
adapter
transcriptome
sequencing
pacbio
vecscreen
13 days ago by
Dunois
★ 2.5k
0
votes
1
reply
553
views
Differential Expression Analysis for miRNA
limma
Differential-gene-Expression
miRNA
updated 19 days ago by
Ram
43k • written 2.9 years ago by
Al
• 0
0
votes
5
replies
547
views
seg fault, core dumped with manta 1.6.0
manta
gdb
updated 20 days ago by
Ram
43k • written 24 days ago by
Greg
• 0
1
vote
0
replies
544
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
9 days ago by
mathavanbioinfo
▴ 90
0
votes
2
replies
543
views
autodockvina
python
python3
autodock
updated 10 days ago by
Ram
43k • written 4 months ago by
iamsmor
• 0
0
votes
2
replies
543
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
10 days ago by
航太郎
• 0
1
vote
1
reply
541
views
GEO analysis with R
R
updated 26 days ago by
Ram
43k • written 2.3 years ago by
abdalla.m
• 0
0
votes
11
replies
524
views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
STARSolo
scRNA-seq
STAR
snRNA-seq
MGI
3 days ago by
atowns21
• 0
0
votes
1
reply
518
views
Geneious vs Perl script of IN SILICO PCR
PCR
Geneious
updated 26 days ago by
Ram
43k • written 23 months ago by
Bio_Crap
• 0
0
votes
2
replies
513
views
Gene expression assay Yeast sample prep
Live-cells
updated 26 days ago by
Ram
43k • written 22 months ago by
dshdixit
▴ 10
0
votes
4
replies
512
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
11 days ago by
feather-W
• 0
0
votes
5
replies
495
views
How to assure that sequence consensus is genuine?
genome
22 days ago by
marongiu.luigi
▴ 710
1
vote
1
reply
481
views
Manta: What does all this mean
manta
Variant-calling
VEP
updated 26 days ago by
Ram
43k • written 9 months ago by
josh.mannheimer
• 0
3
votes
3
replies
481
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 9 days ago by
swbarnes2
14k • written 10 days ago by
noodle
▴ 560
0
votes
1
reply
477
views
GAPIT p-value significance threshold
GAPIT
p-value
GWAS
updated 3 days ago by
ginellegrenier
• 0 • written 4 months ago by
Clayton
• 0
2
votes
5
replies
477
views
Where to find the homopolymer regions bed file for Hg002 genome?
simple-repeats
hg002
bed
homopolymer-regions
12 days ago by
Bikram Kumar
• 0
0
votes
0
replies
476
views
How to map Uniref90 genes (IDs) to Antibiotic resistant genes databases?
CARD
metagenomics
Humann2
antibiotic-resistant-genes
uniref
updated 17 days ago by
Ram
43k • written 2.0 years ago by
ramin.k2013
• 0
0
votes
6
replies
469
views
Error in running Mauve alignner in Ubuntu 20.04
java
linux
aligner
mauve
19 days ago by
marongiu.luigi
▴ 710
0
votes
0
replies
468
views
Correlation between cell type prediction scores and individual gene expression in spatial transcriptomic datasets
single-cell
Spatial-Transcriptomics
2 days ago by
biocellbio
• 0
1
vote
1
reply
466
views
PLINK multivariable GLM output: p-value without BETA and SE
linear-model
glm
plink
updated 20 days ago by
chrchang523
10k • written 20 days ago by
dsbusiness135
▴ 10
2
votes
5
replies
459
views
Marking duplicates using UMIs
Deduplication
UMI
updated 6 days ago by
i.sudbery
19k • written 8 days ago by
Lipika
• 0
0
votes
1
reply
456
views
principal coordinate analysis
PCoA
R
updated 26 days ago by
Ram
43k • written 10 months ago by
rene.j.erhardt
▴ 20
0
votes
0
replies
449
views
Tools for identifying trans-splicing from long read data
long-read
splicing
nanopore
trans-splicing
updated 23 days ago by
Ram
43k • written 14 months ago by
dthorbur
★ 1.9k
492 results • Page
3 of 10
Recent Votes
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Recent Locations •
All
Germany,
just now
New Zealand,
1 minute ago
Hong Kong,
2 minutes ago
South Korea,
2 minutes ago
United Kingdom,
4 minutes ago
Taiwan,
4 minutes ago
United States,
4 minutes ago
Recent Awards •
All
Popular Question
to
Zhenyu Zhang
★ 1.2k
Popular Question
to
WUSCHEL
▴ 750
Teacher
to
Mensur Dlakic
★ 27k
Teacher
to
Jeremy Leipzig
22k
Popular Question
to
AshleeThomson
▴ 80
Popular Question
to
michael.flower.14
▴ 180
Popular Question
to
Nitin Narwade
★ 1.6k
Recent Replies
Comment: NGS forensics: how to know if data is fabricated
by
i.sudbery
19k
I don't follow your argument for distinguishing between genomic contamination and freud. A data set being bad in terms of genomic contamin…
Comment: What does it mean single base resolution in sequencing?
by
jinyu
▴ 10
Thank you for your detail and great explanation. I do need more time to understand these. And there is still something compuzzling me. For …
Answer: Is it possible to bulk download files from GEO repository?
by
atharvakarkare14
▴ 10
Try using this library [GEOparse][1] [1]: https://github.com/guma44/GEOparse
Answer: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
OK. Problem solved. The problem was from my end. Thank you both for helping !!
Comment: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★ 27k
Appreciate the suggestion, but that ship has sailed and reached the other shore. This happened 10+ years ago. To the best of my knowledge n…
Comment: Figures are disappeared from html report of SnpEff
by
analyst
▴ 30
Files are not opening in any of the computer (ubuntu/windows). I rereun snpEff annotation but still output html files are having missing im…
Comment: Figures are disappeared from html report of SnpEff
by
analyst
▴ 30
I reinstalled nodejs: > sudo apt-get install nodejs Its already up to date with version v10.19.0
Answer: NGS forensics: how to know if data is fabricated
by
Prash
▴ 280
Mensur, if I were you, I'd probably contact the CA directly and check with him whether they have reproduced the works recently. There coul…
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴ 560
Working on it - it's actually a bit difficult. Low coverage of ribosomal proteins. Low coverage of housekeeping genes ...I'm trying to find…
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴ 560
I'm a bit against pubpeer - have you ever posted there? My gripe with them is that the posts are heavily moderated and EDITED to the point…
Comment: NGS forensics: how to know if data is fabricated
by
Philipp Bayer
8.4k
Thanks Mensur! I'd add that in 9 out of 10 cases, you won't receive a reply to a request for raw data. That's just how scientists are, does…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
I had downloaded the two files in a similar manner actually.
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
ok, i'll try to use fastp. I have only used trimmomatic and cutadapt till now and they dont identify on its own. Except the graph in fastqc…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
got it! even if i'm doing the assembly for paired end with both the files do i have set the threshold to 1000bp ?
Comment: NGS forensics: how to know if data is fabricated
by
Philipp Bayer
8.4k
i've been in our org trying to push such a detector, our use-case is much more limited: I want to make simulated eDNA libraries as real as …
Traffic: 2400 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6