User: Varun Gupta

0

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455

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gatk mutect2

15 months ago by Varun Gupta ★ 1.3k

29

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4

replies

25k

views

updated 2.1 years ago by aminghane22 • 0 • written 10.1 years ago by Varun Gupta ★ 1.3k

13

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9

replies

7.9k

views

read counts

updated 3.4 years ago by jerry ▴ 130 • written 12.1 years ago by Varun Gupta ★ 1.3k

1

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2

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2.0k

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mirna

updated 3.4 years ago by Biostar 20 • written 10.1 years ago by Varun Gupta ★ 1.3k

7

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4

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16k

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wiggle format conversion bed

updated 3.6 years ago by Biostar 20 • written 12.3 years ago by Varun Gupta ★ 1.3k

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2

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3.9k

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tophat2

updated 15 months ago by Ram 43k • written 11.1 years ago by Varun Gupta ★ 1.3k

17

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4

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6.0k

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fastq

updated 2.5 years ago by Ram 43k • written 9.8 years ago by Varun Gupta ★ 1.3k

1

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1

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2.3k

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fastq RNA-Seq filter

updated 5.8 years ago by Pierre Lindenbaum 161k • written 5.8 years ago by Varun Gupta ★ 1.3k

2

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8

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7.6k

views

picard markduplicates

updated 5.9 years ago by marcela.uliano ▴ 90 • written 6.0 years ago by Varun Gupta ★ 1.3k

6

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4

replies

2.6k

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bedtools

updated 6.1 years ago by Kevin Blighe 87k • written 6.1 years ago by Varun Gupta ★ 1.3k

4

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12

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4.2k

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igv bigwig

updated 6.2 years ago by dariober 14k • written 6.2 years ago by Varun Gupta ★ 1.3k

4

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4

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11k

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rpkm

updated 6.6 years ago by Biostar 20 • written 12.2 years ago by Varun Gupta ★ 1.3k

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9

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3.2k

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blast blastn RNA-Seq

updated 6.7 years ago by GenoMax 141k • written 6.7 years ago by Varun Gupta ★ 1.3k

2

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2

replies

2.0k

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RNA-Seq exon count splice

updated 7.2 years ago by EagleEye 7.5k • written 7.2 years ago by Varun Gupta ★ 1.3k

13

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17

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11k

views

8 follow

cutadapt trim-galore

updated 9 weeks ago by xiaoleiusc ▴ 140 • written 7.5 years ago by Varun Gupta ★ 1.3k

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1

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2.7k

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bedtools

updated 7.3 years ago by apa@stowers ▴ 600 • written 7.3 years ago by Varun Gupta ★ 1.3k

16

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37

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18k

views

7 follow

sam bam soft clip

updated 7.8 years ago by Biostar 20 • written 9.3 years ago by Varun Gupta ★ 1.3k

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3

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2.7k

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bam

8.1 years ago by Varun Gupta ★ 1.3k

4

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7

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4.5k

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bam

updated 8.1 years ago by John 13k • written 8.1 years ago by Varun Gupta ★ 1.3k

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2

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2.9k

views

updated 8.1 years ago by waqaskhokhar999 ▴ 160 • written 12.1 years ago by Varun Gupta ★ 1.3k

13

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13

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6.1k

views

7 follow

ChIP-Seq TSS

updated 18 months ago by Ram 43k • written 8.7 years ago by Varun Gupta ★ 1.3k

14

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3

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17k

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bowtie2

written 10.8 years ago by Varun Gupta ★ 1.3k

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1

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4.0k

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cufflinks

updated 8.3 years ago by Biostar 20 • written 11.1 years ago by Varun Gupta ★ 1.3k

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1

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2.8k

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RNA-Seq trimming

updated 19 months ago by Ram 43k • written 8.6 years ago by Varun Gupta ★ 1.3k

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2

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2.7k

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bowtie

updated 18 months ago by Ram 43k • written 8.7 years ago by Varun Gupta ★ 1.3k

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2

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2.7k

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bowtie2 chimera

updated 22 months ago by Ram 43k • written 9.1 years ago by Varun Gupta ★ 1.3k

1

vote

1

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1.5k

views

differential-splicing

updated 23 months ago by Ram 43k • written 9.1 years ago by Varun Gupta ★ 1.3k

8

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4

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5.5k

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tophat2

updated 2.3 years ago by Ram 43k • written 11.2 years ago by Varun Gupta ★ 1.3k

3

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2

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3.4k

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fasta yeast genome

updated 2.1 years ago by Ram 43k • written 9.4 years ago by Varun Gupta ★ 1.3k

1

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2

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2.4k

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tissues RNA-Seq

updated 2.2 years ago by Ram 43k • written 9.5 years ago by Varun Gupta ★ 1.3k

3

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3

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3.0k

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microarray alternative splicing

updated 3.1 years ago by Ram 43k • written 9.5 years ago by Varun Gupta ★ 1.3k

1

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4

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6.7k

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cnv

updated 2.3 years ago by Ram 43k • written 9.6 years ago by Varun Gupta ★ 1.3k

1

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0

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6.0k

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bwa-mem

updated 2.3 years ago by Ram 43k • written 9.6 years ago by Varun Gupta ★ 1.3k

1

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6

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2.4k

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mutation bed

updated 2.4 years ago by Ram 43k • written 9.7 years ago by Varun Gupta ★ 1.3k

2

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3

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5.5k

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bowtie

updated 2.5 years ago by Ram 43k • written 9.9 years ago by Varun Gupta ★ 1.3k

1

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2

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4.2k

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igv

updated 10.0 years ago by Sukhi Singh 11k • written 10.1 years ago by Varun Gupta ★ 1.3k

0

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3

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13k

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RNA-Seq DEseq

updated 2.6 years ago by Ram 43k • written 10.0 years ago by Varun Gupta ★ 1.3k

26

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9

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11k

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bowtie bwa

updated 10.1 years ago by lh3 33k • written 10.1 years ago by Varun Gupta ★ 1.3k

13

votes

12

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8.5k

views

7 follow

fastqc illumina rna-seq

updated 2.1 years ago by Ram 43k • written 11.9 years ago by Varun Gupta ★ 1.3k

0

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1

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2.3k

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hmm

updated 10.2 years ago by mdimon • 0 • written 11.8 years ago by Varun Gupta ★ 1.3k

3

votes

9

replies

11k

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bedtools coverage

updated 10.3 years ago by hygine555 • 0 • written 12.2 years ago by Varun Gupta ★ 1.3k

0

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3

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3.8k

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search

updated 10.3 years ago by Pavel Senin ★ 1.9k • written 10.3 years ago by Varun Gupta ★ 1.3k

5

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8

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5.5k

views

7 follow

htseq counts

updated 10.5 years ago by Irsan ★ 7.8k • written 12.1 years ago by Varun Gupta ★ 1.3k

8

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4

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3.2k

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intron coordinates

updated 10.6 years ago by Biostar 20 • written 12.2 years ago by Varun Gupta ★ 1.3k

2

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7

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3.6k

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gatk

updated 10.6 years ago by Biostar 20 • written 10.7 years ago by Varun Gupta ★ 1.3k

31

votes

9

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21k

views

7 follow

genotype

updated 10.8 years ago by stolarek.ir ▴ 700 • written 10.8 years ago by Varun Gupta ★ 1.3k

4

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4

replies

7.2k

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snps

updated 10.9 years ago by Pierre Lindenbaum 161k • written 10.9 years ago by Varun Gupta ★ 1.3k

2

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4

replies

5.8k

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adaptor

updated 11.1 years ago by bioinfo ▴ 830 • written 11.1 years ago by Varun Gupta ★ 1.3k

9

votes

6

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6.8k

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differential expression

updated 11.1 years ago by ff.cc.cc ★ 1.3k • written 11.1 years ago by Varun Gupta ★ 1.3k

6

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4

replies

15k

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bowtie

updated 11.2 years ago by lh3 33k • written 11.2 years ago by Varun Gupta ★ 1.3k