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Showing :
questions
3
votes
5
replies
1.0k
views
Slicing Genbank File by range
sequence
extract
gbk
python
3.2 years ago by
kamel
▴ 70
4
votes
5
replies
994
views
Several assemblies to reference
assembly
genome
sequence
alignment
3.4 years ago by
kamel
▴ 70
0
votes
0
replies
666
views
non-redundant polymorphic site
alignment
SNP
indels
4.6 years ago by
kamel
▴ 70
1
vote
0
replies
923
views
how generated haploid variants by varscan
SNP
INDEL
Varscan
Haploid
4.6 years ago by
kamel
▴ 70
4
votes
10
replies
1.4k
views
Errors in file embl
genome
annotation
embl file
updated 5.0 years ago by
Juke34
8.5k • written 5.0 years ago by
kamel
▴ 70
5
votes
9
replies
2.1k
views
How to extract only sequences that contain a specific percentage of Cysteines (C)
proteins
sequence
updated 5.2 years ago by
cpad0112
21k • written 5.2 years ago by
kamel
▴ 70
2
votes
6
replies
1.2k
views
how to locate genes coding on the reference genome
localization
alignment
sequence
software
genome
updated 5.2 years ago by
Nicolas Rosewick
11k • written 5.2 years ago by
kamel
▴ 70
7
votes
4
replies
4.3k
views
Number of reads per lane
sequencing
RNA-Seq
illumina
flowcell
updated 5.5 years ago by
GenoMax
141k • written 5.5 years ago by
kamel
▴ 70
1
vote
3
replies
1.8k
views
Software to detect snps and indels on pacbio data
snp
indels
pacbio
5.5 years ago by
kamel
▴ 70
1
vote
6
replies
1.9k
views
Question about Base calling for pacbio data
pacbio
SNP
genome
indel
gatk
updated 5.6 years ago by
lakhujanivijay
5.8k • written 5.6 years ago by
kamel
▴ 70
0
votes
10
replies
1.3k
views
Criteria for protein sequences to be orthologous
alignment
sequence
blastp
5.6 years ago by
kamel
▴ 70
0
votes
0
replies
944
views
Question about Coverage and identity for a good prediction of Pan-proteome
alignment
sequence
gene
blastp
genome
5.6 years ago by
kamel
▴ 70
0
votes
0
replies
655
views
How can I search for the location of effector proteins on genomes
genome
sequence
localization
alignment
proteomes
5.6 years ago by
kamel
▴ 70
1
vote
4
replies
1.2k
views
how to identify cores, accesory and unique sequences from proteomes
alignment
sequence
genome
updated 5.6 years ago by
bioinfo17
▴ 30 • written 5.9 years ago by
kamel
▴ 70
0
votes
2
replies
1.4k
views
help to generate 100% Stacked Bar Chart or a histogram
R
sequence
gene
5.9 years ago by
kamel
▴ 70
0
votes
1
reply
1.1k
views
transl_table (or gcode) for fungi
genome
sequencing
Assembly
next-gen
conversion
updated 5.9 years ago by
GenoMax
141k • written 5.9 years ago by
kamel
▴ 70
0
votes
0
replies
1.3k
views
Do you know a tool that can make pan-genome on on genomes of fungi
genome
alignment
pan-genome
gene
software
5.9 years ago by
kamel
▴ 70
6
votes
15
replies
2.0k
views
Detection of SNPs
SNP
genome
alignment
gene
updated 5.9 years ago by
Alex Reynolds
35k • written 6.0 years ago by
kamel
▴ 70
0
votes
9
replies
1.6k
views
how i can extract the orthologous sequences
alignment
sequence
proteins orthologues
6.0 years ago by
kamel
▴ 70
0
votes
9
replies
2.0k
views
Suggestion on Improving mRNA and sRNA mapping
RNA-Seq
rna-seq
alignment
updated 6.0 years ago by
ataulhaleem
• 0 • written 6.1 years ago by
kamel
▴ 70
1
vote
4
replies
3.4k
views
Question about which option should I choose (reversely stranded or forward stranded)
rna-seq
sequencing
Counts
updated 6.0 years ago by
swbarnes2
14k • written 6.0 years ago by
kamel
▴ 70
0
votes
5
replies
1.7k
views
Questions about quantifying mRNA data
RNA-Seq
gene count
expression
6.0 years ago by
kamel
▴ 70
0
votes
1
reply
1.5k
views
How to integrate interproscan results into a fasta file
sequence
alignment
annotation
updated 6.0 years ago by
Ram
43k • written 6.0 years ago by
kamel
▴ 70
2
votes
5
replies
1.3k
views
Question about normalization and differential expression analysis
RNA-Seq
rna-seq
R
updated 6.0 years ago by
lakhujanivijay
5.8k • written 6.0 years ago by
kamel
▴ 70
13
votes
18
replies
15k
views
Question: How to generate a count matrix with featurecounts
RNA-Seq
rna-seq
updated 6.1 years ago by
Hussain Ather
▴ 990 • written 6.1 years ago by
kamel
▴ 70
1
vote
6
replies
3.7k
views
snap installation error
software error
genome
gene
updated 2.6 years ago by
Deborah
• 0 • written 6.1 years ago by
kamel
▴ 70
8
votes
10
replies
1.3k
views
Detection of transcripts from mRNA and sRNA
RNA-Seq
rna-seq
alignment
assembly
updated 6.2 years ago by
h.mon
35k • written 6.2 years ago by
kamel
▴ 70
3
votes
11
replies
5.0k
views
How can I create a single file (.fasta or .phylip) containing several genomes to build a phylogeny tree
alignment
blast
software error
Phylogeny
updated 6.2 years ago by
Biostar
20 • written 6.8 years ago by
kamel
▴ 70
0
votes
0
replies
1.2k
views
how to get IS query (Fasta) for ISmapper
alignment
blast
software error
6.6 years ago by
kamel
▴ 70
0
votes
0
replies
1.0k
views
Help for the detection of colistin resistant genes
gene
blast
7.2 years ago by
kamel
▴ 70
0
votes
2
replies
3.3k
views
Download error 1000g2015aug for annovar
software error
updated 7.2 years ago by
Pierre Lindenbaum
161k • written 7.2 years ago by
kamel
▴ 70
3
votes
9
replies
2.0k
views
I need to get the fold-coverage
Assembly
written 7.5 years ago by
kamel
▴ 70
0
votes
3
replies
1.3k
views
Error with gff3_to_embl
software error
updated 7.7 years ago by
WouterDeCoster
47k • written 7.7 years ago by
kamel
▴ 70
0
votes
0
replies
1.6k
views
embl format problem
annotation
7.7 years ago by
kamel
▴ 70
0
votes
8
replies
1.5k
views
by what tools I know the closest species from assembly result (Fasta)
sequence
genome
blast
Assembly
next-gen
8.0 years ago by
kamel
▴ 70
35 results • Page
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