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0
votes
2
replies
749
views
How PCR amplification affects rna-seq data
RNA-Seq
3.1 years ago by Javad ▴ 150
0
votes
0
replies
1.0k
views
Comment: C: Bioinformatics method to detect nascent RNA from RNA-seq data
3.3 years ago by Javad ▴ 150
2
votes
2
replies
1.0k
views
Bioinformatics method to detect nascent RNA from RNA-seq data
RNA-Seq nascent rna
3.3 years ago by Javad ▴ 150
0
votes
1
reply
1.2k
views
Comment: C: Current best practice for biomarker discovery using transcriptomics data
3.3 years ago by Javad ▴ 150
0
votes
1
reply
1.2k
views
Comment: C: Current best practice for biomarker discovery using transcriptomics data
3.3 years ago by Javad ▴ 150
7
votes
5
replies
1.2k
views
Current best practice for biomarker discovery using transcriptomics data
RNA-Seq
updated 3.3 years ago by ▴ 160 • written 3.3 years ago by ▴ 150
3
votes
2
replies
2.2k
views
How to count the number of reads aligned to rRNA
RNA-Seq
3.7 years ago by Javad ▴ 150
2
votes
1
reply
991
views
Genome annotation of mouse that only includes long non coding RNa
RNA-Seq
updated 4.1 years ago by 20 • written 6.4 years ago by ▴ 150
0
votes
1
reply
1.9k
views
Comment: C: problem installing cutadapt
4.2 years ago by Javad ▴ 150
1
vote
7
replies
1.9k
views
problem installing cutadapt
RNA-Seq
updated 4.2 years ago by 5.2k • written 4.2 years ago by ▴ 150
0
votes
1
reply
1.9k
views
Comment: C: problem installing cutadapt
4.2 years ago by Javad ▴ 150
1
vote
1
reply
581
views
How to separate different kinds of RNA in my list of gene
RNA-Seq
5.0 years ago by Javad ▴ 150
1
vote
0
replies
905
views
How to create a back-end database of gene expression data
RNA-Seq
5.1 years ago by Javad ▴ 150
14
votes
10
replies
15k
views
how to produce plots like this in R
RNA-Seq
updated 5.2 years ago by ▴ 280 • written 5.8 years ago by ▴ 150
1
vote
2
replies
2.5k
views
Tools for Saturation analysis and gene body coverage analysis
RNA-Seq
updated 5.4 years ago by ▴ 30 • written 6.6 years ago by ▴ 150
12
votes
2
replies
6.7k
views
where to download ERCC RNA spike ins fasta and gff file?
RNA-Seq
updated 5.4 years ago by ▴ 90 • written 6.6 years ago by ▴ 150
2
votes
3
replies
2.9k
views
Differential expression analysis of normalized expression of RNA seq data
RNA-Seq
updated 5.7 years ago by 8.3k • written 5.7 years ago by ▴ 150
0
votes
1
reply
1.4k
views
Comment: C: How to count different features at the same time with htseq
5.7 years ago by Javad ▴ 150
3
votes
3
replies
1.4k
views
How to count different features at the same time with htseq
RNA-Seq
5.7 years ago by Javad ▴ 150
0
votes
1
reply
15k
views
Comment: C: how to produce plots like this in R
5.8 years ago by Javad ▴ 150
4
votes
3
replies
3.4k
views
The best way to produce gene body coverage
RNA-Seq
updated 5.8 years ago by ★ 5.1k • written 5.8 years ago by ▴ 150
0
votes
1
reply
3.4k
views
Comment: C: problem in running cutadapt on multiple cores
5.9 years ago by Javad ▴ 150
0
votes
1
reply
3.4k
views
Comment: C: problem in running cutadapt on multiple cores
5.9 years ago by Javad ▴ 150
1
vote
6
replies
3.4k
views
problem in running cutadapt on multiple cores
RNA-Seq
5.9 years ago by Javad ▴ 150
0
votes
1
reply
2.8k
views
How to remove primers from a sequencing run with cutadapt
RNA-Seq
5.9 years ago by Javad ▴ 150
2
votes
1
reply
789
views
SNPs identification in Human
RNA-Seq
updated 6.0 years ago by 141k • written 6.0 years ago by ▴ 150
2
votes
2
replies
939
views
differences in different versions of genomic assemblies
RNA-Seq
updated 6.0 years ago by 141k • written 6.0 years ago by ▴ 150
18
votes
14
replies
2.7k
views
6 follow
SNPs in 1000 genome project
SNP
updated 6.0 years ago by 35k • written 6.0 years ago by ▴ 150
0
votes
2
replies
2.7k
views
Comment: C: SNPs in 1000 genome project
6.0 years ago by Javad ▴ 150
0
votes
3
replies
2.7k
views
Comment: A: SNPs in 1000 genome project
6.0 years ago by Javad ▴ 150
2
votes
4
replies
2.6k
views
How to run cutadapt in parallel
RNA-Seq
updated 6.1 years ago by 20 • written 6.2 years ago by ▴ 150
0
votes
1
reply
2.6k
views
Comment: C: How to run cutadapt in parallel
6.2 years ago by Javad ▴ 150
0
votes
0
replies
13k
views
Comment: C: htseq-count output file
6.4 years ago by Javad ▴ 150
9
votes
2
replies
13k
views
htseq-count output file
RNA-Seq
updated 6.4 years ago by ★ 3.8k • written 6.4 years ago by ▴ 150
0
votes
1
reply
2.3k
views
Comment: C: single cell RNA-seq 10X genomics
6.4 years ago by Javad ▴ 150
0
votes
0
replies
1.8k
views
How to import read count matrix into CellDataSet object
RNA-Seq
updated 6.4 years ago by 161k • written 6.4 years ago by ▴ 150
2
votes
1
reply
1.8k
views
How to count number of reads aligned to rRNA and tRNA in bacterial genome
next-gen
updated 6.5 years ago by 20 • written 6.6 years ago by ▴ 150
2
votes
4
replies
1.5k
views
How I can produce graphs like this
next-gen RNA-Seq
updated 6.5 years ago by ▴ 290 • written 6.5 years ago by ▴ 150
0
votes
0
replies
1.5k
views
Comment: C: How I can produce graphs like this
6.5 years ago by Javad ▴ 150
0
votes
2
replies
9.4k
views
Comment: C: How to run a Perl script
6.5 years ago by Javad ▴ 150
5
votes
6
replies
9.4k
views
How to run a Perl script
genome rna-seq next-gen
updated 6.5 years ago by ▴ 280 • written 6.5 years ago by ▴ 150
13
votes
5
replies
37k
views
looking for an R package for GO term analysis
RNA-Seq next-gen
updated 6.5 years ago by 87k • written 6.5 years ago by ▴ 150
0
votes
1
reply
37k
views
Comment: C: looking for an R package for GO term analysis
6.5 years ago by Javad ▴ 150
7
votes
4
replies
5.5k
views
Converting GTF file to UCSC-styled bed file
RNA-Seq genome next-gen
updated 6.5 years ago by ▴ 580 • written 6.5 years ago by ▴ 150
0
votes
1
reply
3.7k
views
Comment: C: Converting different annotation file formats (GTF/GFF/BED) to each other
6.6 years ago by Javad ▴ 150
2
votes
4
replies
3.7k
views
Converting different annotation file formats (GTF/GFF/BED) to each other
rna-seq next-gen
updated 6 months ago by ▴ 120 • written 6.6 years ago by ▴ 150
8
votes
3
replies
5.4k
views
How to manipulate a gff or gtf file manually?
RNA-Seq genome next-gen
updated 6.6 years ago by ▴ 380 • written 6.6 years ago by ▴ 150
0
votes
1
reply
1.9k
views
Comment: C: Normalization of RNA-seq data
6.6 years ago by Javad ▴ 150
1
vote
3
replies
1.9k
views
Normalization of RNA-seq data
RNA-Seq
updated 6.6 years ago by ★ 1.6k • written 6.6 years ago by ▴ 150
3
votes
1
reply
1.9k
views
Combining several fasta files and gff files
rna-seq
6.6 years ago by Javad ▴ 150
59 results • Page 1 of 2
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