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0
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224
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Filtering VCF by specific tag in INFO field
view bcftools vcf filter INFO
updated 18 days ago by ▴ 730 • written 19 days ago by ▴ 20
1
vote
2
replies
185
views
Converting dbSNP VCF to work with RefSeq chromossome ID
NCBI dbSNP RefSeq
updated 25 days ago by 153k • written 25 days ago by ▴ 20
4
votes
2
replies
602
views
How to create a new gene signature from RNAseq data
gene RNAseq signature
updated 8 months ago by 71k • written 8 months ago by ▴ 20
0
votes
1
reply
336
views
Filtering VCF variants based on txt file with variants CHROM, POS and ID
VCF
updated 11 months ago by 38k • written 11 months ago by ▴ 20
0
votes
1
reply
542
views
Running STAR-SEQR with star outputs
STAR-SEQR STAR fusion RNAseq
updated 19 months ago by 127k • written 19 months ago by ▴ 20
0
votes
1
reply
481
views
GSEA and over-representation analysis of many genes
GSEA DE ORA RNAseq
updated 15 months ago by ▴ 10 • written 19 months ago by ▴ 20
1
vote
1
reply
593
views
How can I compare the similarities of two transcriptomes?
transcriptome similarity rnaseq
updated 21 months ago by ▴ 880 • written 21 months ago by ▴ 20
2
votes
6
replies
1.4k
views
Can't count features with featurecount
RNAseq featurecounts
23 months ago by avelarbio46 ▴ 20
9
votes
11
replies
2.6k
views
Bash loop for bbduk
bash bbduk
updated 24 months ago by 21k • written 24 months ago by ▴ 20
0
votes
3
replies
824
views
Removing batch effects
batch-effect RNA-Seq
updated 2.1 years ago by 13k • written 2.1 years ago by ▴ 20
0
votes
4
replies
889
views
STAR-fusion on galaxy
Galaxy RNA-Seq STAR-fusion
2.2 years ago by avelarbio46 ▴ 20
2
votes
1
reply
483
views
Gene size correction for small RNA
small RNA miRNA RNA-Seq normalization
updated 2.2 years ago by ★ 4.0k • written 2.2 years ago by ▴ 20
2
votes
2
replies
812
views
How to trim reads when I'm not sure where they are?
RNA-Seq cutadapt illumina
updated 2.2 years ago by ▴ 920 • written 2.2 years ago by ▴ 20
25
votes
13
replies
2.2k
views
6 follow
Best ubuntu version for bioinformatics?
ubuntu
updated 2.3 years ago by ★ 23k • written 2.3 years ago by ▴ 20
3
votes
10
replies
1.1k
views
Small RNAseq Dataset to test scripts
RNA-Seq rna-seq
updated 2.3 years ago by ▴ 150 • written 2.3 years ago by ▴ 20
0
votes
0
replies
885
views
Galaxy workflow concatenate
Galaxy workflow fastqc multiqc
2.5 years ago by avelarbio46 ▴ 20
1
vote
1
reply
451
views
RNAseq more sequences than reads after mapping
RNA-Seq mapping reads
2.5 years ago by avelarbio46 ▴ 20
0
votes
6
replies
771
views
List of genes with common false-positives
NGS False-positive
updated 3.3 years ago by 20 • written 3.5 years ago by ▴ 20
2
votes
2
replies
1.4k
views
Pooling samples for RNA
RNA-Seq Cancer Illumina Pool
3.9 years ago by avelarbio46 ▴ 20
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