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Showing :
questions
6
votes
13
replies
15k
views
8 follow
Split a VCF file into individual sample files
VCF
written 9.1 years ago by
win
▴ 970
7
votes
4
replies
3.3k
views
Generate GVF file from VCF file
VCF
updated 15 months ago by
Alireza
▴ 30 • written 9.3 years ago by
win
▴ 970
10
votes
7
replies
7.1k
views
6 follow
Convert GVF to VCF
vcf
updated 20 days ago by
george-hall-ucl
• 0 • written 9.3 years ago by
win
▴ 970
6
votes
3
replies
4.7k
views
Run R in multi threaded
R
updated 3.2 years ago by
Kevin Blighe
87k • written 8.3 years ago by
win
▴ 970
7
votes
8
replies
2.1k
views
Get genotype from reference fasta
fasta
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
win
▴ 970
5
votes
7
replies
4.1k
views
Pubmed Id From Abstract
pubmed
updated 3.5 years ago by
Biostar
20 • written 11.0 years ago by
win
▴ 970
21
votes
11
replies
23k
views
8 follow
Lift-over on a VCF
VCF
updated 22 months ago by
Ram
43k • written 9.1 years ago by
win
▴ 970
2
votes
2
replies
3.6k
views
Find common entries between VCF and ClinVar VCF
VCF
ClinVar
updated 3.6 years ago by
Damianos P. Melidis
▴ 40 • written 6.3 years ago by
win
▴ 970
2
votes
2
replies
2.3k
views
Interpreting stats from gnomAD/ ExAC reference population
ExAC
updated 3.8 years ago by
Biostar
20 • written 5.7 years ago by
win
▴ 970
37
votes
8
replies
22k
views
6 follow
Remove VCF header lines
vcf
updated 3.8 years ago by
hackdna
▴ 30 • written 11.8 years ago by
win
▴ 970
32
votes
6
replies
31k
views
6 follow
Count Of Variants
vcf
updated 3.9 years ago by
Stephane Plaisance
▴ 460 • written 11.7 years ago by
win
▴ 970
27
votes
25
replies
19k
views
8 follow
Use tabix with a list of regions
tabix
updated 3.9 years ago by
mg
▴ 250 • written 11.8 years ago by
win
▴ 970
39
votes
24
replies
34k
views
13 follow
Samtools And Region List
samtools
list
updated 2.2 years ago by
debora.gisch
• 0 • written 11.8 years ago by
win
▴ 970
0
votes
5
replies
4.3k
views
VCF evaluation for reporting
VCF
updated 4.5 years ago by
mo.imranshah
▴ 10 • written 6.3 years ago by
win
▴ 970
0
votes
7
replies
2.5k
views
RealignerTargetCreator (GATK) contig issue
GATK
updated 4.5 years ago by
Biostar
20 • written 6.3 years ago by
win
▴ 970
1
vote
1
reply
3.6k
views
genome coordinates for snps
SNP
updated 22 months ago by
Ram
43k • written 9.1 years ago by
win
▴ 970
9
votes
6
replies
7.8k
views
Dbsnp In Vcf
vcf
dbsnp
updated 5.9 years ago by
scchess
▴ 640 • written 10.3 years ago by
win
▴ 970
0
votes
1
reply
1.8k
views
Segemehl aligner multithread issue
alignment
updated 6.0 years ago by
Ram
43k • written 9.1 years ago by
win
▴ 970
0
votes
1
reply
2.6k
views
GATK joint genotyping
GATK
joint-genotyping
NGS
updated 19 months ago by
Jeremy Leipzig
22k • written 6.1 years ago by
win
▴ 970
2
votes
3
replies
3.0k
views
Genomic coordinates for transcripts
NGS
updated 6.2 years ago by
michael.ante
★ 3.8k • written 6.2 years ago by
win
▴ 970
3
votes
7
replies
2.3k
views
Reference allele is too long message GATK
VCF
updated 6.2 years ago by
WouterDeCoster
47k • written 6.2 years ago by
win
▴ 970
0
votes
2
replies
1.4k
views
VariantRecalibration step issue
vcf
6.2 years ago by
win
▴ 970
0
votes
2
replies
4.0k
views
QD Annotation error in GATK in VariantRecalibration step
NGS
6.2 years ago by
win
▴ 970
9
votes
11
replies
3.0k
views
6 follow
WGS data for pipeline development
NGS
WGS
updated 6.2 years ago by
Sean Davis
26k • written 6.2 years ago by
win
▴ 970
1
vote
1
reply
2.5k
views
NA12878 variants and SNPedia
vcf
6.2 years ago by
win
▴ 970
0
votes
2
replies
1.0k
views
Sample data for RNA STAR
RNA-Seq
updated 6.3 years ago by
JJ
▴ 680 • written 6.3 years ago by
win
▴ 970
3
votes
7
replies
6.4k
views
Human reference files in HG38 GATK resource bundle
VCF
updated 11 months ago by
DareDevil
★ 4.3k • written 6.3 years ago by
win
▴ 970
0
votes
1
reply
1.4k
views
Individual chromosome SNP VCF
NGS
updated 6.3 years ago by
Vivek
★ 2.7k • written 6.3 years ago by
win
▴ 970
1
vote
5
replies
2.6k
views
Non IUPAC error on hg38 GATK FASTA
NGS
6.3 years ago by
win
▴ 970
2
votes
6
replies
2.4k
views
BWA-MEM alignment error with hg38 from GATK
NGS
6.3 years ago by
win
▴ 970
2
votes
1
reply
2.3k
views
Known Indels and BED sites
WES
6.3 years ago by
win
▴ 970
3
votes
6
replies
4.1k
views
6 follow
Parse FASTQC data
NGS
updated 17 months ago by
pcsk9
• 0 • written 6.3 years ago by
win
▴ 970
0
votes
0
replies
1.6k
views
VCF with SnpEff and gene name annotations
VCF
6.3 years ago by
win
▴ 970
6
votes
6
replies
5.3k
views
Determine Variant Location From Vcf
vcf
updated 6.3 years ago by
Biostar
20 • written 11.8 years ago by
win
▴ 970
1
vote
1
reply
1.0k
views
PICARD tools param database
PICARD
updated 6.3 years ago by
Raony GuimarĂ£es
★ 1.4k • written 6.3 years ago by
win
▴ 970
0
votes
2
replies
2.7k
views
Detect CNVs in single sample using cn.MOPS
cn.mops
CNV
updated 6.4 years ago by
colindaven
6.4k • written 8.3 years ago by
win
▴ 970
1
vote
4
replies
1.6k
views
Microbial genomics pipelines
ngs
microbial genomics
updated 6.7 years ago by
h.mon
35k • written 6.7 years ago by
win
▴ 970
9
votes
10
replies
18k
views
7 follow
Annotate A Vcf File
vcf
annotation
updated 7.0 years ago by
k.kathirvel93
▴ 300 • written 10.6 years ago by
win
▴ 970
1
vote
0
replies
945
views
Disease risk variants from 23andme
variants
7.1 years ago by
win
▴ 970
8
votes
8
replies
7.5k
views
Individual VCF files from main VCF file
VCF
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
win
▴ 970
4
votes
7
replies
2.0k
views
Commonly used charts in NGS/ bioinformatics
sequencing
R
updated 7.5 years ago by
lakhujanivijay
5.8k • written 7.5 years ago by
win
▴ 970
6
votes
2
replies
3.2k
views
Variation Count Based On Chromosome
vcf
updated 7.5 years ago by
Biostar
20 • written 10.4 years ago by
win
▴ 970
0
votes
2
replies
2.6k
views
KEGG REST API
KEGG
updated 7.5 years ago by
lelle
▴ 830 • written 7.5 years ago by
win
▴ 970
0
votes
3
replies
1.2k
views
Variation name pathogenic
next-gen
7.6 years ago by
win
▴ 970
1
vote
8
replies
7.3k
views
Homozygous Ref Calls And No Calls
updated 7.7 years ago by
Korsocius
▴ 250 • written 11.8 years ago by
win
▴ 970
0
votes
0
replies
2.1k
views
ClinVar view from API
ClinVar
7.7 years ago by
win
▴ 970
0
votes
0
replies
1.4k
views
CNVKit for cancer germline mutation detection
NGS
7.8 years ago by
win
▴ 970
1
vote
0
replies
1.6k
views
Tumor germline CNA caller- concensus
CNA
CNV
NGS
7.9 years ago by
win
▴ 970
12
votes
13
replies
1.8k
views
Downstream cancer variant reporting
ngs
updated 7.9 years ago by
Khader Shameer
18k • written 7.9 years ago by
win
▴ 970
2
votes
4
replies
3.1k
views
Cancer CNV workflow
NGS
updated 7.9 years ago by
ivivek_ngs
★ 5.2k • written 7.9 years ago by
win
▴ 970
124 results • Page
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