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0
votes
1
reply
877
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Comment:
Comment: bioinformatics tutorial on Oxford Nanopore Technologies
7 months ago by
Bogdan
★ 1.4k
1
vote
4
replies
877
views
bioinformatics tutorial on Oxford Nanopore Technologies
oxford
nanopore
updated 7 months ago by
GenoMax
153k • written 8 months ago by
Bogdan
★ 1.4k
8
votes
16
replies
6.5k
views
9 follow
visualize CNV data based on WGS
CNV
updated 18 months ago by
clealk
▴ 80 • written 7.7 years ago by
Bogdan
★ 1.4k
1
vote
0
replies
671
views
Forum:
list of bioinformatics tools in cancer genomics
mutations
CNA
cancer
genomics
LOH
updated 19 months ago by
Pierre Lindenbaum
166k • written 19 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
548
views
filtering SNV/INDEL in tumor-only WGS samples
Tumor-only
samples
22 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.1k
views
filtering variants in a Strelka2 VCF file based on AD and AF
Filter
VCF
24 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
594
views
Copy Number Alteration and Loss or Heterozygosity
LOH
CNA
copy-number
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.5k
views
Comment:
Comment: fitting a copy number profile to know CNV signatures
2.4 years ago by
Bogdan
★ 1.4k
2
votes
3
replies
1.5k
views
fitting a copy number profile to know CNV signatures
CNV
copy
number
LOH
CNA
updated 2.4 years ago by
LauferVA
4.8k • written 2.4 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
650
views
allelic copy number variation
LOH
CNA
CNV
copy-number
updated 2.4 years ago by
Ram
45k • written 2.4 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
679
views
alelle - specific CNA/LOH
cancer
CNV
genomics
LOH
CNA
2.5 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
522
views
network alignment and network regression
network
2.6 years ago by
Bogdan
★ 1.4k
1
vote
0
replies
741
views
CNA/LOH caller on WGS data and chromosomal instability index
CNA
CNV
2.7 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
911
views
downloading the VCF files of CCLE project (or cancer genomics WGS)
cancer
genomics
WGS
CCLE
VCF
2.7 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
597
views
packages to detect chromoanagenesis phenomena in germline or cancer genomes
ShatterProof
2.7 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
10.0k
views
Answer:
Answer: How does edgeR do ERCC spike-in normalization?
2.8 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
511
views
clustering of genome segments
cancer
genomics
epigenetics
2.8 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.2k
views
Comment:
Comment: wig2bed and counting the reads in the peaks
2.9 years ago by
Bogdan
★ 1.4k
3
votes
2
replies
1.2k
views
wig2bed and counting the reads in the peaks
bedtools
ChIP-seq
deeptools
bedops
updated 2.2 years ago by
Ram
45k • written 2.9 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
1.9k
views
normalize and compare bigwig files
bigwig
updated 2.9 years ago by
Matthias Zepper
5.1k • written 2.9 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.1k
views
calling peaks in ChIP-seq datasets from bedgraph files
ChIP-seq
MACS2
updated 3.0 years ago by
Marco Pannone
▴ 810 • written 3.0 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
3.0k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
3.0 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
3.0k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
3.0 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
3.0k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
3.0 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
3.0k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
3.0 years ago by
Bogdan
★ 1.4k
0
votes
11
replies
3.0k
views
paired-end reads, idxstats, and samtools and grep
samtools
updated 3.0 years ago by
LauferVA
4.8k • written 3.0 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
3.0k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
3.0 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
3.2k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
3.1 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
3.2k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
3.1 years ago by
Bogdan
★ 1.4k
5
votes
8
replies
3.2k
views
converting bedgraph to bigwig by not using ucsc tools
bedgraph
bigwig
3.1 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
3.2k
views
Answer:
Answer: converting bedgraph to bigwig by not using ucsc tools
3.1 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.6k
views
Comment:
Comment: CWL and Arvados
3.1 years ago by
Bogdan
★ 1.4k
3
votes
3
replies
1.6k
views
CWL and Arvados
CWL
workflow
manager
3.1 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
995
views
SNV, CNA, SV
SV
CNA
SNV
updated 3.1 years ago by
LauferVA
4.8k • written 3.1 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
715
views
extracting sequences from a bam file
bam
updated 3.1 years ago by
LChart
5.1k • written 3.1 years ago by
Bogdan
★ 1.4k
1
vote
3
replies
1.7k
views
comparisons between 2 ChIP-seq datasets
ChIP-seq
updated 3.3 years ago by
ATpoint
89k • written 3.3 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.7k
views
Comment:
Comment: comparisons between 2 ChIP-seq datasets
3.3 years ago by
Bogdan
★ 1.4k
4
votes
3
replies
2.2k
views
computing chromothripsis on cancer genomes
snp
cnv
sv
cancer
updated 3.3 years ago by
Thind amarinder
▴ 340 • written 7.1 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
2.3k
views
Comment:
Comment: saving png images and X11
3.3 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
916
views
browser to visualize single cell data
scATAC-seq
updated 3.3 years ago by
lieven.sterck
15k • written 3.3 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
557
views
HIC databases
Hi-C
3.4 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
986
views
scATAC-seq
scATAC-seq
3.5 years ago by
Bogdan
★ 1.4k
2
votes
0
replies
986
views
Answer:
Answer: scATAC-seq
3.5 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
646
views
ssvQC
ssvQC
3.5 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
2.3k
views
Comment:
Comment: saving png images and X11
3.6 years ago by
Bogdan
★ 1.4k
0
votes
5
replies
2.3k
views
saving png images and X11
scripting
saving
images
and
3.3 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
839
views
HOMER on AWS
HOMER
updated 16 months ago by
clairechung112
▴ 10 • written 3.6 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
898
views
compare the background levels in two chip-seq experiments
ChIPseq
updated 3.6 years ago by
seidel
11k • written 3.6 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
980
views
Comment:
Comment: interchromosomal interactions and 4C
3.6 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
980
views
interchromosomal interactions and 4C
4C
3.6 years ago by
Bogdan
★ 1.4k
388 results • Page
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