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questions
0
votes
0
replies
837
views
Get the ID's for Paired-end Reads from BAM file including /1 and /2
samtools
seqkit
4.4 years ago by
User000
▴ 690
1
vote
23
replies
2.1k
views
FASTQ exctract ID's
fastq
4.4 years ago by
User000
▴ 690
3
votes
4
replies
587
views
Unique lines among 200 files
bash
NGS
updated 4.4 years ago by
Pierre Lindenbaum
161k • written 4.4 years ago by
User000
▴ 690
1
vote
6
replies
2.0k
views
Analysing BAM files
RNA-Seq
bam
updated 4.4 years ago by
julien.fouret.fr
▴ 20 • written 4.4 years ago by
User000
▴ 690
2
votes
8
replies
6.2k
views
Performing fast bootstrap in R using ape package
R
bootstrap
ape
updated 4.7 years ago by
mgdias.jose
▴ 20 • written 6.0 years ago by
User000
▴ 690
0
votes
1
reply
1.7k
views
Functional categorization of genes
gene
function
updated 5.3 years ago by
m3hdad
▴ 10 • written 6.3 years ago by
User000
▴ 690
0
votes
2
replies
1.7k
views
Neighbor Joining tree visualization
R
tree
nj
updated 5.6 years ago by
Ram
43k • written 5.6 years ago by
User000
▴ 690
6
votes
3
replies
5.2k
views
Add a legend to circos plot
Circos
updated 5.8 years ago by
Biostar
20 • written 6.8 years ago by
User000
▴ 690
1
vote
4
replies
1.5k
views
Change nexus textlabels
r
nexus
tree
bash
updated 5.9 years ago by
Anima Mundi
★ 2.9k • written 5.9 years ago by
User000
▴ 690
2
votes
8
replies
3.0k
views
DAPC different clustering results
dapc
R
find.clusters
k-means
6.0 years ago by
User000
▴ 690
4
votes
8
replies
3.1k
views
Variant calling for a polyploid species
RNA-Seq
SNP
updated 6.1 years ago by
Omics data mining
▴ 260 • written 6.2 years ago by
User000
▴ 690
0
votes
0
replies
815
views
Pathway search for the plant genes
pathway
6.3 years ago by
User000
▴ 690
0
votes
3
replies
1.4k
views
How to extend the heatmap data points that extended past end of ideogram in circos plot?
circos
6.6 years ago by
User000
▴ 690
8
votes
12
replies
6.4k
views
7 follow
Get cds using bedtools
bedtools
updated 6.6 years ago by
molly77
▴ 10 • written 7.5 years ago by
User000
▴ 690
0
votes
0
replies
1.1k
views
Database of PLANT cloned genes/How to get sequences of gene symbols
gene
sequence
6.6 years ago by
User000
▴ 690
1
vote
6
replies
5.3k
views
Download genes from KEGG pathway
R
python
updated 6.8 years ago by
theobroma22
★ 1.2k • written 6.8 years ago by
User000
▴ 690
0
votes
0
replies
1.7k
views
Dotplot of multiple sequences in R
R
6.9 years ago by
User000
▴ 690
0
votes
4
replies
2.8k
views
Circos tiles color
circos
7.1 years ago by
User000
▴ 690
8
votes
4
replies
25k
views
PC3 & PC2 using plotPCA function in R
R
updated 7.1 years ago by
Santosh Anand
5.7k • written 7.1 years ago by
User000
▴ 690
1
vote
4
replies
1.2k
views
Gene expression variation between conditions
R
DESeq2
7.1 years ago by
User000
▴ 690
0
votes
1
reply
1.3k
views
Smoothing gene expression over a window size
RNA-Seq
expression
7.1 years ago by
User000
▴ 690
5
votes
6
replies
6.3k
views
Count non-zero elements along the column and append to table in R
R
updated 7.1 years ago by
avaneesh.t
▴ 20 • written 7.1 years ago by
User000
▴ 690
0
votes
3
replies
1.8k
views
Smoothing densities of genes in R
RNA-Seq
R
7.1 years ago by
User000
▴ 690
7
votes
5
replies
2.2k
views
Log2 raw count matrix with one condition
DESeq2
updated 7.1 years ago by
Carlo Yague
8.7k • written 7.1 years ago by
User000
▴ 690
3
votes
3
replies
1.7k
views
Filter hits that aligned concordantly exactly 1 times base on mpq>40
bam
samtools
updated 7.2 years ago by
Brian Bushnell
20k • written 7.2 years ago by
User000
▴ 690
3
votes
4
replies
1.8k
views
circos plot tiles outside the cytogenetic bands
circos
updated 7.2 years ago by
cschu181
★ 2.8k • written 7.2 years ago by
User000
▴ 690
11
votes
10
replies
9.1k
views
Extract uniquely mapped reads from bam file
RNA-Seq
updated 7.4 years ago by
Devon Ryan
104k • written 7.4 years ago by
User000
▴ 690
9
votes
28
replies
6.1k
views
Getting in frame stop codons from fasta
python
updated 7.5 years ago by
WouterDeCoster
47k • written 7.6 years ago by
User000
▴ 690
1
vote
7
replies
5.7k
views
Converting SNP datasets from A/B to ACGT format
SNP
updated 19 months ago by
Ram
43k • written 8.6 years ago by
User000
▴ 690
0
votes
3
replies
2.3k
views
Convert BLAST format to EMBL file format
blast
embl
updated 8.0 years ago by
ivivek_ngs
★ 5.2k • written 8.0 years ago by
User000
▴ 690
1
vote
1
reply
1.7k
views
Functional annotation of genes on chromosome
gene
blast
updated 8.2 years ago by
Juke34
8.5k • written 8.2 years ago by
User000
▴ 690
9
votes
4
replies
3.6k
views
Mapping RNA-seq against genome
RNA-Seq
SNP
8.3 years ago by
User000
▴ 690
3
votes
8
replies
3.3k
views
Aligning BAC to an assembled sequence
alignment
blast
updated 19 months ago by
Ram
43k • written 8.6 years ago by
User000
▴ 690
0
votes
7
replies
2.2k
views
A tool to align two assembled sequences
alignment
updated 19 months ago by
Ram
43k • written 8.6 years ago by
User000
▴ 690
2
votes
11
replies
3.1k
views
BAM file interpretation and consensus creation
samtools
bam
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
User000
▴ 690
7
votes
15
replies
10k
views
Mapping Illumina reads against one single gene
next-gen
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
User000
▴ 690
3
votes
4
replies
3.3k
views
Making a Consensus Sequence of a Gene
next-gen
bwa
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
User000
▴ 690
3
votes
6
replies
2.7k
views
Multidimentional Scaling Analysis
MDS
SNP
PLINK
GBS
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
User000
▴ 690
2
votes
1
reply
3.6k
views
Multidimentional Scaling using PLINK
PLINK
MDS
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
User000
▴ 690
8
votes
14
replies
7.0k
views
Group The Data In Python
python
updated 13 months ago by
Ram
43k • written 10.1 years ago by
User000
▴ 690
10
votes
24
replies
6.0k
views
6 follow
Plant Annotation Workflow
plants
updated 13 months ago by
Ram
43k • written 10.1 years ago by
User000
▴ 690
6
votes
4
replies
4.0k
views
Finding Overlapping, Non Overlapping Hits
python
updated 13 months ago by
Ram
43k • written 10.1 years ago by
User000
▴ 690
3
votes
10
replies
4.0k
views
Speeding Up The Blast Job
updated 10.1 years ago by
Michael
54k • written 10.1 years ago by
User000
▴ 690
7
votes
17
replies
6.1k
views
Blast Result: Finding Non Overlapping Hits
python
updated 14 months ago by
Ram
43k • written 10.1 years ago by
User000
▴ 690
94 results • Page
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