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195 results • Page
2 of 4
Sort: Views
Rank
Views
Votes
Replies
1
vote
1
reply
401
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
6 days ago by
renan.igor
• 0
0
votes
1
reply
398
views
GAPIT p-value significance threshold
GAPIT
p-value
GWAS
updated 23 hours ago by
ginellegrenier
• 0 • written 4 months ago by
Clayton
• 0
4
votes
2
replies
366
views
Missing protein (VEGF-A) in String db
VGFA
stringdb
updated 13 hours ago by
shalespringer
• 0 • written 11 weeks ago by
Phenylananin
▴ 20
0
votes
3
replies
366
views
How to identify gaps in a genome?
awk
seqkit
assembly
fasta
genome
updated 3 days ago by
colindaven
6.4k • written 11 days ago by
rj.rezwan
• 0
2
votes
3
replies
318
views
How to establish haplotype-specific gene expression levels
RNA-seq
Haplotype
updated 1 hour ago by
dsull
★ 5.8k • written 16 days ago by
javanokendo
▴ 60
1
vote
5
replies
317
views
DYH17 Structure Prediction
BLAST
Protein-Structure-Prediction
2 days ago by
anasjamshed
▴ 120
0
votes
8
replies
309
views
Error in cnetplot enrichplot package
R
updated 3 days ago by
Ram
43k • written 3 days ago by
Farhad
• 0
0
votes
6
replies
305
views
How to slice a gvcf file with tabix?
Tabix
bed
gvcf
2 days ago by
Sd
• 0
0
votes
4
replies
303
views
Heatmap and rna-seq
RNA-Seq
Heatmap
updated 1 minute ago by
pinheirofabiano
▴ 10 • written 3 days ago by
qudrat.nii
▴ 10
1
vote
1
reply
297
views
GTF file from Stringtie to R Studio for either Ballgown or DESeq2
Stringtie
Cufflinks
Ballgown
DESeq2
updated 6 days ago by
Ram
43k • written 6 days ago by
Nina
• 0
2
votes
4
replies
294
views
What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
ChIP-seq
2 days ago by
HyperEvo
• 0
0
votes
5
replies
290
views
Should I remove unlocalized scaffols in reference genome before alignment?
qualimap
alignment
minimap2
GRCh38
assembly
2 days ago by
njornet
▴ 20
0
votes
5
replies
290
views
Is it possible to get a list of representative genomes from a past RefSeq release?
representative
ncbi
asembly
refseq
updated 1 day ago by
GenoMax
141k • written 2 days ago by
Bertalan_Takacs
▴ 90
2
votes
1
reply
286
views
Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
shotgun
metagenomics
blastp
taxonomy
updated 6 days ago by
GenoMax
141k • written 6 days ago by
rebecca.calvo
• 0
2
votes
3
replies
285
views
clustalo - align milions of short seq, memory issue
memory
clustalo
updated 3 days ago by
Mensur Dlakic
★ 27k • written 4 days ago by
emmanouil.a
▴ 120
0
votes
4
replies
284
views
Should I use unpaired reads from trimmomatic
RNA-seq
QC
Trimmomatic
updated 2 days ago by
swbarnes2
14k • written 3 days ago by
dxj294
• 0
0
votes
1
reply
283
views
Could you please assist in identifying this cluster?
single-cell
updated 6 days ago by
Ram
43k • written 7 days ago by
Kazo
• 0
2
votes
5
replies
274
views
How to trim transcripts using information from NCBI contamination screen report
RNAseq
assembly
transcriptome
contamination
6 hours ago by
Lada
▴ 30
0
votes
0
replies
273
views
Choice of relatedness cutoff for GWAS of a large cohort (>100K samples)
relatedness
IBD
GWAS
updated 3 days ago by
Ram
43k • written 14 months ago by
Oak
▴ 10
3
votes
2
replies
271
views
p-value and Boneferroni adjusted p-value the same in R
Bonferroni
R
Statistics
p-value
Fisher
4 days ago by
kristiewyleung
• 0
1
vote
5
replies
264
views
Downsampling fastq file
downsample
fastq
updated 3 days ago by
Ram
43k • written 3 days ago by
marco.barr
▴ 80
3
votes
5
replies
262
views
Per base sequence content error in RNAseq analysis
RNA-seq
analysis
updated 4 days ago by
GenoMax
141k • written 4 days ago by
ahmad.sajad4541
• 0
0
votes
1
reply
261
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 6 days ago by
GenoMax
141k • written 6 days ago by
bioyas
▴ 10
7
votes
2
replies
261
views
Gene set enrichment analysis differences between 2020 and 2024
Gene-ontology
updated 2 days ago by
geneontologyhelp
▴ 390 • written 3 days ago by
catherine.teyssier
• 0
2
votes
4
replies
261
views
interpretartion of a vcf file
calling
genotype
ONT
variant
diploid
2 days ago by
samuelkalandarov2002
▴ 10
0
votes
2
replies
259
views
bam merging for archaic samples
samtools
bam
updated 4 days ago by
Ram
43k • written 6 days ago by
Matteo Ungaro
▴ 100
1
vote
1
reply
257
views
Removing Illumina microarray probes with no expression HumanHT-12v4
microarray
HumanHT-12v4
Illumina
updated 6 days ago by
Gordon Smyth
★ 7.0k • written 6 days ago by
Bioinformatician
• 0
0
votes
4
replies
250
views
different FeatureCounts output for the same data
fpkm
Counts
Rsubread
rna-seq
1 day ago by
sehriban.buyukkilic
▴ 10
1
vote
3
replies
248
views
some error in building kraken2 database
metagenome
kraken2
2 days ago by
Art1ess
• 0
0
votes
0
replies
247
views
roary not working with pgap output gff files with fasta sequence but works with prokka's gff outputs
pangenome
PGAP
NCBI
roary
Prokka
2 days ago by
pramach1
▴ 40
0
votes
2
replies
236
views
How to calculate identity percentage between proteins contained in a FASTA file?
protein
FASTA
alignment
updated 1 day ago by
Ram
43k • written 2 days ago by
v.berriosfarias
▴ 140
0
votes
3
replies
233
views
Difference between samtools "-f 9" and "-f 11"
samtools
sam
bam
updated 2 days ago by
Istvan Albert
100k • written 2 days ago by
Dylan
• 0
1
vote
2
replies
233
views
permutation test in edgeR
rna-seq
edgeR
updated 4 days ago by
Gordon Smyth
★ 7.0k • written 18 days ago by
Netanel
• 0
2
votes
4
replies
231
views
Fetch table from clinvar database according to a list of rsid
python
clinvar
perl
updated 17 hours ago by
Ram
43k • written 1 day ago by
ashaneev07
▴ 20
3
votes
4
replies
229
views
Why gatk VariantAnnotator required bam and coverage files
gatk
VariantAnnotator
19 hours ago by
QX
• 0
3
votes
3
replies
217
views
Getting the nucleotide sequence of proteins, having their UniProt IDs
Nucleotide
Genomic
Sequence
Uniprot
Proteins
updated 4 days ago by
GenoMax
141k • written 4 days ago by
Mariana
▴ 10
3
votes
3
replies
217
views
Forum:
Ideal PC configurations and operating system for bioinformatics laboratory
PC
updated 2 days ago by
GenoMax
141k • written 2 days ago by
Estevão
• 0
0
votes
2
replies
213
views
Annovar using R package
Annovar
gnomAD
R
17 hours ago by
DKA
▴ 40
3
votes
1
reply
212
views
Seurat merge and batch correction
Seurat
updated 2 days ago by
Ram
43k • written 3 days ago by
sooni
▴ 20
0
votes
2
replies
212
views
Wilcox test using data slot (log normalized count values) of scRNA-seq between two groups
scRNAseq
2 days ago by
mropri
▴ 150
0
votes
0
replies
212
views
Using samtools with GCS (google cloud storage) on a docker container seems to give "Protocol Not Supported" error
samtools
gcs
5 days ago by
abhishekghadge
• 0
0
votes
3
replies
205
views
Help for coding: Trinity for differential gene expression studies
Gene
updated 3 days ago by
mchour
• 0 • written 3 days ago by
rhossen
• 0
1
vote
3
replies
205
views
Filter BAM to keep only alignments at an interval, ignoring reads spliced over
samtools
bam
splicing
3 days ago by
WouterDeCoster
47k
0
votes
0
replies
204
views
Copy number variation plot
Copy-number-variation
genomics
updated 6 days ago by
Ram
43k • written 6 days ago by
Emmi
• 0
0
votes
0
replies
202
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
4 days ago by
Javier
• 0
0
votes
0
replies
201
views
Lncipedia GTF file error
Proteomics
updated 6 days ago by
Ram
43k • written 7 days ago by
atharvakarkare14
▴ 10
2
votes
2
replies
201
views
HaplotypeCaller - only SNPs
HaplotypeCaller
GATK
updated 2 days ago by
analyst
▴ 30 • written 2 days ago by
lorena9132
• 0
0
votes
1
reply
199
views
Blasting two protein sequences vs two nucleotide sequences
gene-hunting
blast
updated 2 days ago by
Istvan Albert
100k • written 3 days ago by
Abeer
• 0
0
votes
0
replies
197
views
Meta analysis of two GWAS summary statistics: one study is case-control and the other is quantitative
GWAS
Meta-analysis
updated 3 days ago by
Ram
43k • written 3 days ago by
Oak
▴ 10
1
vote
2
replies
197
views
alignment result
RNA-seq
samtools
hisat2
1 day ago by
ahmad.sajad4541
• 0
195 results • Page
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