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191 results • Page
4 of 4
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
98
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
6 days ago by
Vijith
▴ 30
10
votes
14
replies
643
views
6 follow
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
updated 1 day ago by
GenoMax
142k • written 7 days ago by
nicole.kavanagh
• 0
0
votes
1
reply
284
views
Is there a way to increase the automatic label text size in Cytoscape?
Cytoscape
updated 6 days ago by
Scooter
▴ 280 • written 13 days ago by
avocado123
• 0
0
votes
0
replies
100
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
6 days ago by
James
▴ 10
0
votes
1
reply
590
views
Basic stats in hierfstat
Fst
stats
hierfstat
updated 6 days ago by
mdav
• 0 • written 18 months ago by
Zoe
• 0
1
vote
3
replies
245
views
Odd alignment question/finding
Alignment
updated 5 days ago by
barslmn
★ 2.1k • written 6 days ago by
poordumbsillyidiot
• 0
0
votes
7
replies
569
views
Post-imputation plot
michigan-imputation-server
quality-control
updated 6 days ago by
LChart
3.9k • written 9 days ago by
kl
▴ 10
0
votes
1
reply
784
views
cnetplot category names are too long
clusterprofiler
RNA-Seq
enrichplot
cnetplot
updated 6 days ago by
Ram
43k • written 2.7 years ago by
carov
• 0
1
vote
2
replies
259
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
6 days ago by
rianna.collins
• 0
1
vote
3
replies
289
views
ERROR When Using Ensembl Plants Biomart Wget API
biomart
plant
ensembl
2 days ago by
Dora
▴ 10
0
votes
2
replies
229
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
1 day ago by
Ahiad Chen Zion
• 0
1
vote
5
replies
341
views
Introduce SNPs on FASTA
simulation
snps
haplotypes
pharmacogenetics
5 days ago by
Riccardo
▴ 10
3
votes
3
replies
226
views
Gene Specific coverage from WGS data
linux
WGS
Bioinformatics
SARS
CoV2
1 day ago by
Adyasha
• 0
0
votes
5
replies
326
views
RNAseq one control two conditions, shared and exclusive genes
conditions
RNAseq
multiple
Rstudio
updated 5 days ago by
Mohamed Abderrahmane
▴ 20 • written 9 days ago by
matteo.levorato
• 0
1
vote
2
replies
240
views
Downloading full alignments from Pfam
pfam
3 days ago by
bef1
• 0
0
votes
4
replies
376
views
Highest variable features in single cell data
single-cell
1 day ago by
carolofharvest
▴ 40
5
votes
5
replies
612
views
Tutorial:
how to combine multiple RNAseq count files into a single dataframe in R and unix
Unix
RNAseq
R
updated 5 days ago by
Mbofire
• 0 • written 13 days ago by
Ming Tommy Tang
★ 3.9k
5
votes
4
replies
388
views
Forum:
Ideal PC configurations and operating system for bioinformatics laboratory
PC
6 days ago by
Estevão
• 0
1
vote
6
replies
355
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 5 days ago by
GenoMax
142k • written 23 days ago by
eebloom
▴ 80
0
votes
2
replies
247
views
Help with generating annotation database for dog genome to use in ANNOVAR for variant annotation of dog tumor sequences
ANNOVAR
1 day ago by
sainavyav22
• 0
1
vote
0
replies
190
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
6 days ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
287
views
read length in structural variant calling
nanopore
SV
QC
ONT
variant
5 days ago by
eebloom
▴ 80
0
votes
0
replies
179
views
CellPhoneDB results
cellphonedb
cpdb
cell_surface_proteins
updated 2 days ago by
GenoMax
142k • written 10 weeks ago by
piotto
▴ 20
1
vote
10
replies
853
views
error to run rnammer
phylogenomics
rRNA_extraction
rnammer
updated 2 days ago by
antonio.spl
• 0 • written 3 months ago by
microorganism_001
▴ 30
4
votes
15
replies
1.6k
views
how to test for differential expression in samples where a global increase in gene expression is expected
edgeR
DESeq
Differential-Expression
RNA-Seq
updated 4 days ago by
Gordon Smyth
★ 7.1k • written 4 months ago by
raplayer
▴ 10
1
vote
4
replies
1.1k
views
Filtering qscore on dorado
dorado
filtering
QC
nanopore
Guppy
6 days ago by
eebloom
▴ 80
2
votes
4
replies
710
views
Count all variants from vcf file
variants
vcf
Count
updated 1 day ago by
Pierre Lindenbaum
161k • written 20 months ago by
t.ali
• 0
29
votes
28
replies
34k
views
11 follow
Split Fastq Files Into Chunks Of 1M Reads
split
fastq
updated 6 days ago by
thomas.heigl.ibk
• 0 • written 12.8 years ago by
Bioscientist
★ 1.7k
6
votes
6
replies
1.8k
views
agilent human all exon sureselct v7 bed file
exon
human
bed
v7
agilent
all
sureselect
updated 3 days ago by
MiladAD
▴ 10 • written 24 months ago by
soheil
• 0
4
votes
9
replies
2.1k
views
6 follow
Same sequencing sample in multiple lanes. How to analyse it?
sequencing
bowtie2
alignment
samtools
ngs
updated 5 days ago by
ST
• 0 • written 2.2 years ago by
Federico
• 0
0
votes
1
reply
547
views
HOMER on AWS
HOMER
updated 5 days ago by
clairechung112
• 0 • written 2.2 years ago by
Bogdan
★ 1.4k
4
votes
6
replies
1.2k
views
Soft-clipping read ends based on read group
ancient
molecule
at
bam
DNA
RG
ends
clipping
damage
updated 13 hours ago by
chenl
▴ 10 • written 2.5 years ago by
Martyna
• 0
16
votes
12
replies
7.4k
views
10 follow
how to split multi-fasta file into single fasta file named by header
genome
perl
python3
bash
python
updated 5 days ago by
rsieber
▴ 10 • written 3.1 years ago by
Kumar
▴ 120
10
votes
16
replies
17k
views
7 follow
How Can I Count Snps In My Final Vcf Files
SNP
updated 1 day ago by
Pierre Lindenbaum
161k • written 5.7 years ago by
mostafarafiepour
▴ 180
2
votes
2
replies
1.8k
views
Parametric or non-parametric tests for qPCR significance testing between treatments?
qPCR
statistical test
parametric
non-parametric
updated 5 days ago by
e.r.zakiev
▴ 210 • written 3.8 years ago by
n.anuragsharma
▴ 40
3
votes
0
replies
1.1k
views
Tool:
Sars-Cov-2 Genome & ACE 2 Exploration
sequence
alignment
SNP
genome
3 days ago by
Ibrahim Tanyalcin
★ 1.2k
1
vote
14
replies
2.4k
views
Extract gRNA sequence using cutadapt
cutadapt
trimming
crispr
sequencing
updated 6 days ago by
GenoMax
142k • written 4.5 years ago by
Swimming bird
▴ 20
2
votes
5
replies
2.5k
views
identifying transgene insertion site in WGS
WGS
insertion site
trangene
de-novo
soap
updated 10 hours ago by
Cameron.walker9900
• 0 • written 5.1 years ago by
Assa Yeroslaviz
★ 1.8k
1
vote
11
replies
5.5k
views
Truncated Bam Error
R
next-gen
sequencing
software error
updated 2 days ago by
guanghao
• 0 • written 6.1 years ago by
vivekruhela
▴ 20
4
votes
6
replies
3.8k
views
How to interpret DEXseq results in therms of significance
DEXseq
RNA-Seq
exon
updated 2 days ago by
Sara
▴ 30 • written 6.7 years ago by
Lila M
★ 1.2k
2
votes
2
replies
2.6k
views
Pindel Segmentation Fault Error
pindel
updated 4 days ago by
Ruqaiya
• 0 • written 10.2 years ago by
Yuelin
▴ 20
191 results • Page
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Difference between Pysam Pileup and Fetch
Answer: Where can I download some example BAM files?
Comment: Where can I download some example BAM files?
Where can I download some example BAM files?
Verify if all the components of a pathway are present in a genomes
removeBatchEffect explained using base R linear models
How to get number of characters (nucleotides) in fasta file
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Answer: Contig assembly task, errors
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Philipp Bayer
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Feels a bit strange for an aptitude test, feels more like homework. 1) seems OK to me, just chuck them into CAP3 and see what falls out.…
Comment: Help with Biopython for Beginner
by
Pierre Lindenbaum
161k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
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Hey, I know it's been 5 years but I have the same issue. When I run the test the software is unable to perform and always deliver the follo…
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Hi, you can check it from github here: [https://zwdzwd.github.io/InfiniumAnnotation][1]. I don't know if this is what you are looking fo…
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It makes absolutely no sense to conduct such an analysis. I strongly discourage you to even start with it. Results will be utterly nonsense…
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swbarnes2
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Cross-posted: https://support.bioconductor.org/p/9158194/
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It will depend on your context and question. I guess you will want to compare gene expression between your conditions within cell types …
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You get this error when you try to compare two data frames that have different dimensions. Try using the traceback() command to figure out …
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Sorry, this was supposed to be a comment appended to the chain above. I didn't mean to post as an answer.
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> when I looked at the expression of aging marker genes, I noticed that diets sequenced in the same batch appeared more similar. How simil…
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Curious if others have also benefited from Picard's [CompareSAMs][1] tool. Seems to do exactly what Madhu has requested. If the headers …
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