1
vote
2
replies
482
views
7
votes
3
replies
744
views
12 weeks ago by
npont
▴
20
1
vote
2
replies
482
views
0
votes
1
reply
466
views
0
votes
11
replies
970
views
12 weeks ago by
Jon
•
0
2
votes
1
reply
390
views
6
votes
4
replies
734
views
0
votes
2
replies
635
views
11 weeks ago by
t.fosk
•
0
7
votes
3
replies
603
views
updated 12 weeks ago by
rfran010
★
1.6k
•
written 12 weeks ago by
littlebioinformatician
•
0
1
vote
2
replies
569
views
11 weeks ago by
Shakunthala Natarajan
•
0
1
vote
0
replies
1.4k
views
2
votes
2
replies
492
views
12 weeks ago by
joe_genome
▴
70
0
votes
0
replies
582
views
12 weeks ago by
Physalia-courses
★
2.6k
1
vote
1
reply
466
views
0
votes
1
reply
552
views
0
votes
0
replies
331
views
12 weeks ago by
yu
•
0
5
votes
6
replies
832
views
updated 12 weeks ago by
lieven.sterck
15k
•
written 12 weeks ago by
Nasim Gandomdoust
•
0
0
votes
1
reply
400
views
0
votes
1
reply
388
views
updated 12 weeks ago by
GenoMax
153k
•
written 12 weeks ago by
tutorwhizzz
•
0
0
votes
0
replies
290
views
12 weeks ago by
anthony.santana.703.j
▴
30
2
votes
3
replies
510
views
9 weeks ago by
jkim
▴
220
0
votes
0
replies
275
views
1
vote
1
reply
420
views
0
votes
0
replies
294
views
updated 12 weeks ago by
GenoMax
153k
•
written 12 weeks ago by
mete.han.celebi
•
0
0
votes
0
replies
271
views
12 weeks ago by
t.kajiyama
•
0
0
votes
14
replies
1.2k
views
1
vote
1
reply
556
views
updated 12 weeks ago by
Mensur Dlakic
★
30k
•
written 12 weeks ago by
NIkita
•
0
0
votes
0
replies
308
views
1
vote
1
reply
381
views
updated 12 weeks ago by
Pierre Lindenbaum
166k
•
written 12 weeks ago by
analyst
▴
70
2
votes
6
replies
673
views
0
votes
1
reply
356
views
10 weeks ago by
analyst
▴
70
1
vote
3
replies
745
views
0
votes
1
reply
395
views
4
votes
4
replies
673
views
0
votes
1
reply
368
views
updated 12 weeks ago by
andres.firrincieli
3.9k
•
written 12 weeks ago by
henrique.mouradias
•
0
1
vote
3
replies
539
views
0
votes
1
reply
443
views
0
votes
2
replies
448
views
12 weeks ago by
María José
▴
10
0
votes
1
reply
500
views
0
votes
1
reply
425
views
updated 12 weeks ago by
andres.firrincieli
3.9k
•
written 12 weeks ago by
Berkan
•
0
0
votes
1
reply
386
views
4
votes
6
replies
787
views
updated 12 weeks ago by
antonioggsousa
3.4k
•
written 3 months ago by
Jamie
•
0
0
votes
0
replies
348
views
3 months ago by
Cornelio
•
0
2
votes
2
replies
1.1k
views
updated 3 months ago by
Daniel Lai
▴
10
•
written 5.0 years ago by
gmora
▴
30
2
votes
1
reply
432
views
0
votes
3
replies
579
views
0
votes
4
replies
607
views
0
votes
1
reply
715
views
0
votes
1
reply
366
views
3
votes
2
replies
589
views
3 months ago by
lessismore
★
1.4k
Recent Votes
Recent Locations •
All
Sweden, just now
India/Ahmedabad, 2 minutes ago
Russia, 4 minutes ago
Heraklion, Crete, Greece, 5 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 7 minutes ago
Austria/Vienna, 8 minutes ago
Norway, 12 minutes ago
Recent Awards •
All
Popular Question to
shevch2009
▴
20
Popular Question to
Panos
★
1.8k
Popular Question to
amy967107
•
0
Popular Question to
Chris
▴
360
Popular Question to
Michael
56k
Popular Question to
Andrew Su
5.0k
Recent Replies
Comment: Yeast reference-based genome assembly
by
Michael
56k
So, you aren't sure about the exact species? Then you might want to be careful with reference-based assembly in general. I recommend the fo…
Comment: Structural Variant identification on pangenome graphs
by
Panos
★
1.8k
That's a very comprehensive list! Thanks for sharing!
`minigraph` better suits my needs because all I need is SVs for my genomes. As far a…
Comment: Yeast reference-based genome assembly
by
amy967107
•
0
I have ~2.01 Gb of ONT data and the target genome is ~20–23 Mb (90–100× coverage). My ONT read N50 is ~3.8 kb, so contiguity may be limited…
Comment: Yeast reference-based genome assembly
by
amy967107
•
0
This is a yeast strain (probably Rhodotorula spp.) and I'm trying to assemble the entire genome from nanopore reads using a reference-based…
Answer: Yeast reference-based genome assembly
by
Michael
56k
The new [hifiassm ONT][1] may be all you need for getting a good assembly. I would not recommend LRSDAY, except for its annotation part (wh…
Comment: magpurify errors
by
Mensur Dlakic
★
30k
By the way, these errors are not unique. If you look through the `magpurify` GitHub issues, both types have been reported already.
- https…
Comment: magpurify errors
by
Mensur Dlakic
★
30k
There is absolutely no chance that a contig labeled `k127_4584534` doesn't exist in your fasta files. These names are not made up out of th…
Comment: magpurify errors
by
shevch2009
▴
20
Strange but there are no such headers or contig names in my fasta files
Comment: replace gene names in gff file
by
Juke34
9.3k
Yes the --prefix Option exists. There is no count per chromosome. You can do it by splitting your input and analyse one sequence at a time…
Comment: Variant analysis for mouse WES
by
GenoMax
153k
You could open a new issue and ask the developers of `maftools` if this was something they can add.
Comment: How to Identify Conserved 21-mers Across TE Insertions in Drosophila?
by
GenoMax
153k
Do you have the locations/sequence of the regions you are interested in?
Comment: magpurify errors
by
Mensur Dlakic
★
30k
To me that sounds like an error in sequence header formatting. Maybe some contig headers are repeated? Or their sequences are short or miss…
Comment: magpurify errors
by
shevch2009
▴
20
Thanks
What about phylo-markers module error, I tried to look for it :)
But haven't found anything.
And why it's not working for some but …
Answer: magpurify errors
by
Mensur Dlakic
★
30k
A general answer is to always Google the error message. Hopefully you do that in the future. This is the outcome of Googling `AttributeErro…
Traffic: 4759 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6