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122,232 results • Page
11 of 2445
Sort: Rank
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Votes
Replies
4
votes
4
replies
7.6k
views
News:
Feedback needed on new user-friendly BED file tool
bedtools
bed
updated 12 weeks ago by
ATpoint
90k • written 4 months ago by
nadia
• 0
1
vote
1
reply
5.1k
views
BedToIntervalList (Picard) and IntervalListTools (Picard)
variant
rna-seq
picard
calling
gatk
updated 12 weeks ago by
Pierre Lindenbaum
166k • written 12 weeks ago by
Beyza
▴ 10
0
votes
0
replies
5.4k
views
News:
Workshop:Virtual Genome Assembly, Sept. 16-18, 2025
virtual
workshop
UConn
GenomeAssembly
12 weeks ago by
zsc25001
▴ 10
3
votes
3
replies
7.6k
views
HIV virus - GTF annonation
HIV
updated 12 weeks ago by
Ales
▴ 90 • written 4.5 years ago by
maxdlf12
• 0
0
votes
0
replies
5.4k
views
Job:
Tenure Track Professor of Translational Bioinformatics and Precision Medicine
bioinformatics
liquid-biopsy
computational-biology
12 weeks ago by
klaus.wagner
• 0
8
votes
9
replies
12k
views
6 follow
HIV : gtf or gff annotation
gtf
annotation
hiv
gff
updated 9 weeks ago by
Ales
▴ 90 • written 11.4 years ago by
Nicolas Rosewick
11k
4
votes
1
reply
6.0k
views
DESeq2 time-series - full model matrix is less than full rank
full-rank
design
DESeq2
time-series
updated 12 weeks ago by
swbarnes2
15k • written 12 weeks ago by
gogeni5529
▴ 90
0
votes
1
reply
5.6k
views
Removing PCR duplicates in gam file
giraffe
vg
updated 12 weeks ago by
colindaven
8.1k • written 12 weeks ago by
gulin201909
• 0
0
votes
0
replies
5.2k
views
Job:
2-year postdoc is now available at my lab in Lund, Sweden, in AI and Forensics
postdoc
Forensics
Crime
AI
12 weeks ago by
eranelhaik
▴ 30
2
votes
3
replies
6.4k
views
RNAseq edgeR :considering interaction is needed?
edgeR
interaction
RNAseq
updated 12 weeks ago by
SamGG
▴ 150 • written 12 weeks ago by
tesler
▴ 10
15
votes
16
replies
13k
views
6 follow
Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the system., exiting.
haplotypecaller
parabricks
gpu
12 weeks ago by
Pierre Lindenbaum
166k
5
votes
3
replies
8.7k
views
CDS prediction for newly assembled transcripts
RNA-Seq
transcriptome
Assembly
CDS
updated 12 weeks ago by
Ales
▴ 90 • written 7.5 years ago by
I0110
▴ 160
1
vote
2
replies
8.0k
views
Gene feature information missing in Stringtie merged assembly
RNA-Seq
Assembly
gtf
updated 12 weeks ago by
Ales
▴ 90 • written 6.4 years ago by
waqaskhokhar999
▴ 160
0
votes
3
replies
7.5k
views
Criteria for choosing variants
variant
RNASeq
12 weeks ago by
ramiro.barrantes
▴ 60
3
votes
5
replies
9.7k
views
6 follow
How to fix "Please indicate the file directory in 'setting' file?" for MaxBin2?
maxbin2
binning
metagenomics
updated 12 weeks ago by
GenoMax
154k • written 4.5 years ago by
O.rka
▴ 750
5
votes
4
replies
7.4k
views
Tutorial:
Perform Hierarchical Clustering in R with ggdendro Visualization
statistics
hierarchical_clustering
ggdendro
r
12 weeks ago by
Jeremy
▴ 940
4
votes
3
replies
5.1k
views
Difficulty Imputing Missing SNPs for Haplotype Construction in PyPGx
pypgx
haplotype
imputation
beagle
genotyping
updated 12 weeks ago by
Aleksandra
▴ 190 • written 12 weeks ago by
Andresa Capodifoglio
▴ 40
5
votes
1
reply
5.8k
views
CBioPortal: What does Mutation type: Targeted_Region means?
cbioportal
variants
cancer
oncokb
updated 12 weeks ago by
Aleksandra
▴ 190 • written 12 weeks ago by
Frans
▴ 20
0
votes
0
replies
4.4k
views
News:
Machine Learning for Multi-Omics Integration – University of Barcelona, 15–17 December
DataIntegration
Machine-Learning
Mult-Omics
SingleCellRNAseq
12 weeks ago by
Physalia-courses
★ 2.7k
4
votes
10
replies
8.4k
views
Calling star alleles with PGx-POP on my VCF file
vcf
alleles
pgx-pop
star
updated 12 weeks ago by
Andresa Capodifoglio
▴ 40 • written 3.4 years ago by
Vanish007
▴ 50
3
votes
1
reply
4.4k
views
Query Regarding NGS Analysis with TruSeq UMI Adapters
Twist
updated 12 weeks ago by
GenoMax
154k • written 12 weeks ago by
1769mkc
★ 1.3k
0
votes
4
replies
5.0k
views
Learning Bioinformatics doing Projects
Bioinfo
Projects
offtopic
12 weeks ago by
Anjali
• 0
1
vote
15
replies
9.2k
views
6 follow
High percentage of intronic/intergenic reads in RNA-seq
RNA-seq
updated 12 weeks ago by
i.sudbery
22k • written 3.3 years ago by
lluc.cabus
▴ 30
0
votes
0
replies
4.2k
views
Job:
Assistant Professor in Genomics (Colgate University)
Genomics
Assistant-Professor
updated 3 months ago by
Ram
45k • written 3 months ago by
Ahmet
• 0
2
votes
6
replies
4.6k
views
deeparg-takes-too-many-threads
shotgun
deeparg
raw
reads
updated 3 months ago by
Dave Carlson
★ 2.2k • written 3 months ago by
shevch2009
▴ 20
4
votes
2
replies
4.2k
views
When to merge RNA-seq files with multiple sequencing lanes
RNA-seq
DEseq2
Trinity
CD-HIT
GOseq
updated 3 months ago by
GenoMax
154k • written 3 months ago by
Olivia
• 0
2
votes
1
reply
3.9k
views
Regress out covariate in boxplot
ggplot2
updated 3 months ago by
LChart
5.2k • written 3 months ago by
Nona
▴ 90
0
votes
1
reply
3.9k
views
DESeq2 design: longitudinal two timepoint study with treatment effect
longitudinal
treatment
DESeq2
effect
updated 3 months ago by
LChart
5.2k • written 3 months ago by
jonstug
• 0
4
votes
0
replies
16k
views
Herald:
The Biostar Herald for Tuesday, September 02, 2025
herald
3 months ago by
Biostar
3.7k
5
votes
6
replies
6.8k
views
protein interaction prediction
protein
interaction
9 weeks ago by
Fatemeh
▴ 50
6
votes
7
replies
5.0k
views
Add reference genomes as an outgroup to a phylogenetic tree
phylogenetic
tree
updated 3 months ago by
Michael
56k • written 3 months ago by
Álvaro
• 0
0
votes
2
replies
12k
views
News:
FINAL CALL: In-Person Single-Cell RNA-Seq Data Analysis Workshop (October 6-8 in Berlin)
scRNAseq
singleCell
transcriptomics
10 weeks ago by
ecSeq Bioinformatics
▴ 20
0
votes
0
replies
3.4k
views
News:
Hands-On NGS Epigenomics Data Analysis Workshop (November 3-5 in Munich, Germany)
bisulfite-seq
Chromatin
ChIP-seq
methylation
ATAC-Seq
3 months ago by
ecSeq Bioinformatics
▴ 20
1
vote
0
replies
3.6k
views
Job:
Looking for mentorship and collaboration opportunities in RNA-seq machine learning (R-based)
R
Bayesian
machine-learning
rna-seq
updated 3 months ago by
GenoMax
154k • written 3 months ago by
AcheampongAndy
▴ 10
1
vote
6
replies
4.3k
views
Low percentage of classified reads (~18%) after Kraken2 analysis – is this expected?
Kraken2
metagenomics
shotgun
12 weeks ago by
sumah.1si21bt017
▴ 30
0
votes
0
replies
3.4k
views
News:
online course Sex Chromosome Evolution (6–10 October)
Genomics
Evolution
SexChromosome
3 months ago by
Physalia-courses
★ 2.7k
2
votes
4
replies
3.3k
views
Are these 10x samples too low quality for downstream analysis?
single-cell
scrnaseq
Seurat
10x
updated 5 weeks ago by
songli
• 0 • written 3 months ago by
AHerik
▴ 40
2
votes
5
replies
4.7k
views
Split chromosome into smaller fragments to save memory when build xg and gcsa index.
vg
updated 12 weeks ago by
Jordan M Eizenga
▴ 760 • written 3 months ago by
李经纬
• 0
5
votes
2
replies
3.5k
views
Universal Human Reference RNA Sample
RNA
updated 3 months ago by
michael.j.apostolides
▴ 80 • written 4.3 years ago by
kstangline
▴ 110
1
vote
2
replies
2.7k
views
Question about substitution of KEGG
annotation
KEGG
Functional
gene
3 months ago by
dxh0222
▴ 10
0
votes
1
reply
2.8k
views
Length of 'dimnames' [1] not equal to array extent
SingleCellExperiment
12 weeks ago by
fra.r.silvestro
▴ 10
2
votes
1
reply
2.5k
views
Deeptools PlotProfile
computematrix
deeptool
heatmap
chip-seq
bamcoverage
updated 3 months ago by
ATpoint
90k • written 3 months ago by
Irene
▴ 10
0
votes
0
replies
2.5k
views
News:
online course: Species occurrence data: download and cleaning with R
data-cleaning
biodiversity
species-ocurrence
3 months ago by
Transmitting Science communication
▴ 70
2
votes
3
replies
2.7k
views
Local Synteny Analysis with Uncharacterized Genes
synteny
updated 3 months ago by
Joe
22k • written 3 months ago by
snaledale
• 0
0
votes
3
replies
2.9k
views
Help with metagenomics viral
sequencing
genomic
metagenomic
virology
virus
updated 3 months ago by
cfos4698
★ 1.2k • written 3 months ago by
CECEL
• 0
1
vote
3
replies
2.5k
views
mummer4: how do I get the mapview executable?
mummer
mapview
updated 3 months ago by
GenoMax
154k • written 3 months ago by
Tospohh
▴ 10
3
votes
4
replies
3.1k
views
RTG (Real Time Genomics) docker image - Problem dealing with different VCFs
rtg
vcf
genomic
cancer
10 weeks ago by
stuckinanendlessfebruary
▴ 10
0
votes
0
replies
2.5k
views
News:
online course: R/Bioconductor for Mass Spectrometry and Proteomics
R
Mass-Spectrometry
Proteomics
Bioconductor
3 months ago by
Physalia-courses
★ 2.7k
2
votes
5
replies
2.6k
views
How to obtain a refFlat file for the Rat
RefFlat_file
Rat
updated 3 months ago by
GenoMax
154k • written 3 months ago by
AIMAR
▴ 70
0
votes
0
replies
2.3k
views
News:
Course: Single-cell analysis with R/Bioconductor
SingleCellExperiment
SingleCellWorkflow
SingleCell
SingleCellData
3 months ago by
ludwig.geistlinger
▴ 20
122,232 results • Page
11 of 2445
Recent Votes
Answer: Feature Counts vs Salmon quantification
Answer: Chip-seq analysis Diffbind
Question about variant calling method using pangenome-graph
Comment: SyntaxError in file /snakefile, line 22: invalid decimal literal: None
Answer: Is this Rosalind inspired project actually useful?
Answer: Minimap2 segfaults when mapping Nanopore reads to a very large reference databas
Comment: How to normalize the intensity of bigwig files based on a group of house-keeping
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Comment: "sortmerna" quitting early--is this is a memory issue?
by
Andrew
• 0
Ok, here's the output: https://pastebin.com/uEHSckHS This run had the working directory in the default location, in sortmerna\run, but it …
Answer: Problems in Molecular Docking in Autodock vina
by
Anonsirs
• 0
Try to re run the command by first starting meeko and rdkit . to convert PDB files to PDQT files. It can help vina recognize the atom . a…
Comment: "sortmerna" quitting early--is this is a memory issue?
by
Andrew
• 0
Do you mean the maximum % RAM usage it reaches right before the moment it quits? As I said, the computer has 16 GB RAM, and the run fails w…
Comment: Chip-seq analysis Diffbind
by
Irene
▴ 10
Thank you very much for always answering my doubts and questions. I truly value and appreciate it because it helps me understand the result…
Comment: Minimap2 segfaults when mapping Nanopore reads to a very large reference databas
by
firefox91
▴ 10
Many thanks !
Answer: Re-assembling old RNA-seq reads vs. using an existing transcriptome assembly
by
GenoMax
154k
> I have access to both the raw reads and the previously assembled transcriptome submitted to TSA. and > I am trying to determine wheth…
Answer: Re-assembling old RNA-seq reads vs. using an existing transcriptome assembly
by
dthorbur
★ 3.2k
There are a few factors to consider: **The quality of the existing reference.** If there is a high quality chromosome level assembly,…
Comment: "sortmerna" quitting early--is this is a memory issue?
by
colindaven
8.1k
Pls add the output and your system (especially RAM), no one here can guess.
Answer: Power calculations for differentially methylated DNA samples from sequencing
by
colindaven
8.1k
There are software packages for power analysis such as https://academic.oup.com/bioinformaticsadvances/article/5/1/vbaf150/8173951.
Comment: Data integration single cell using Harmony
by
Arup Ghosh
3.5k
Run QC for each sample separately, then merge run SCTransform, PCA, then Harmony, UMAP, FindNeighbors and FindClusters.
Comment: Data integration single cell using Harmony
by
_deb
• 0
Thank you for the quick answer. I still have a doubt. It would be better to pre-process each sample separately (*filtering, SCTransform…
Comment: Issue while running Kenddata.
by
rana.elromh
• 0
I checked the memory before executing this command. I made a bash script on Ubuntu to run it on 15 folders. But, this problem happened in f…
Comment: Prokka output genes clusterization by function
by
Mensur Dlakic
★ 30k
Many proteins have multiple domains, and are correctly classified with multiple KO numbers. That's not a bug in `kofam_scan` but rather a r…
Comment: mapping sequences on specific region of bacteria genome
by
samuel.a.odonnell
▴ 650
If you want to visualise the mapping; take a look at using IGV. It just requires the genome you used to map the reads and the BAM output (n…
Comment: Prokka output genes clusterization by function
by
shevch2009
▴ 20
Thanks, I had completely forgotten that METABOLIC works with protein sequences. That will work :) I was just trying to figure out how peop…
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