Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
121,537 results • Page
11 of 2431
Sort: Rank
Rank
Views
Votes
Replies
1
vote
0
replies
403
views
News:
Workshop: Virtual Genome Annotation, May 27–29
GenomeAnnotation
workshop
UConn
9 weeks ago by
zsc25001
▴ 10
1
vote
1
reply
470
views
Assigning a string variable on Visual Studio using python
python
visual-studio
updated 9 weeks ago by
Ram
45k • written 9 weeks ago by
arthur_alexander83
• 0
4
votes
4
replies
671
views
Tool:
Gene Exons Painter
Genomics
Visualisation
Exons
Transcripts
Isoforms
updated 9 weeks ago by
benformatics
4.1k • written 9 weeks ago by
Rafal
▴ 70
0
votes
0
replies
398
views
News:
Course online:Functional programming in R, May 27-30
R
programming
functional
9 weeks ago by
soledad.esteban
• 0
3
votes
1
reply
542
views
Herald:
The Biostar Herald for Monday, May 05, 2025
herald
updated 9 weeks ago by
cmdcolin
★ 4.2k • written 9 weeks ago by
Biostar
3.6k
0
votes
0
replies
348
views
How to generate .AED files from .CEL files using Linux (Affymetrix CytoScan HT-CMA 96F)
HT-CMA-96
analysis
data
affymetrix
microarray
9 weeks ago by
genetixs
▴ 20
0
votes
0
replies
392
views
News:
Online course - Introduction to GWAS
R
GWAS
Statistics
9 weeks ago by
Physalia-courses
★ 2.6k
4
votes
3
replies
550
views
Sample level genotype mapping in plink vcf output
VCF
updated 9 weeks ago by
Pierre Lindenbaum
166k • written 9 weeks ago by
1769mkc
★ 1.3k
6
votes
2
replies
517
views
Tool:
RNAseq Power Calculator
calculator
Replicates
RNAseq
Statistics
Power
9 weeks ago by
Rafal
▴ 70
1
vote
3
replies
567
views
Association (Protein interaction) in Intact database results what can really mean?
protein-protein-interaction
database
protein
proteins
Intact
updated 8 weeks ago by
Mensur Dlakic
★ 29k • written 9 weeks ago by
Bendegúz
• 0
3
votes
4
replies
681
views
About FastP Tool
Raw
Quality_control
Preprocessing
alignment
reads
9 weeks ago by
AIMAR
▴ 40
3
votes
9
replies
997
views
Transcript identification and quantification
splitseq
transcript
scRNA
9 weeks ago by
anton.avramov
• 0
0
votes
1
reply
452
views
Treatment of nanoparticles after buying before the experiment
fermentation
treatment
Nanoparticles
dark
updated 9 weeks ago by
ATpoint
88k • written 9 weeks ago by
Nick
• 0
2
votes
1
reply
455
views
Tool:
Accessible color palettes for charts and dataviz
dataviz
updated 9 weeks ago by
Bastien Hervé
6.4k • written 9 weeks ago by
Pierre
▴ 20
3
votes
4
replies
987
views
Warning in bcftools when subsetting a VCF by variant ID
bcftools
VCF
Beagle5.5
updated 9 weeks ago by
Pierre Lindenbaum
166k • written 9 weeks ago by
Mwangana
• 0
1
vote
2
replies
489
views
Lucidea Array Spotter - Question about machinery
sequencing
Microarray
updated 9 weeks ago by
GenoMax
152k • written 9 weeks ago by
Taylor
• 0
1
vote
5
replies
820
views
Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
slingshot
PCA
Seurat
scater
single-cell
updated 7 weeks ago by
Bastien Hervé
6.4k • written 9 weeks ago by
txema.heredia
▴ 250
0
votes
6
replies
726
views
How can I find KO IDs for ORF sequences in a large FASTA file?
KEGG
ORF
updated 28 days ago by
Mensur Dlakic
★ 29k • written 9 weeks ago by
Nikesh
• 0
0
votes
0
replies
381
views
Single MAG Recruitment to multiple metaT Samples
metagenomics
rna-seq
transcriptomics
9 weeks ago by
zjhennin
• 0
0
votes
1
reply
1.1k
views
Normalization - Tissue specificity analysis
gtex
updated 9 weeks ago by
Pallavi
• 0 • written 4.3 years ago by
Filago
▴ 110
2
votes
4
replies
3.2k
views
Transcript Specific Expression Data
rna-seq
updated 9 weeks ago by
Pallavi
• 0 • written 12.7 years ago by
disco
▴ 30
9
votes
6
replies
8.3k
views
6 follow
Database To Look For Tissue-Specific Transcript Expression Of The Same Gene.
transcript
updated 9 weeks ago by
Pallavi
• 0 • written 12.4 years ago by
michealsmith
▴ 800
7
votes
6
replies
2.5k
views
6 follow
Tool:
Bioinformatics Docker Images Project (https://pegi3s.github.io/dockerfiles/)
containers
docker
updated 9 weeks ago by
barslmn
★ 2.4k • written 6.4 years ago by
pegi3sdocker
▴ 10
1
vote
0
replies
596
views
Job:
Looking for a mentor
health
mentor
informatics
updated 9 weeks ago by
GenoMax
152k • written 9 weeks ago by
yoav.lama
▴ 10
0
votes
0
replies
790
views
Job:
Postdoc fellow - genetics, proteomics, single cell and bioinformatics, Indiana University, Indianapolis, USA
single-cell
bioinformatics
proteomics
genetics
updated 8 weeks ago by
Ram
45k • written 9 weeks ago by
Jingwen
• 0
0
votes
0
replies
393
views
Strand bias and placement bias in variant calls
Variant
filter
updated 10 weeks ago by
Pierre Lindenbaum
166k • written 10 weeks ago by
Carolyn
• 0
0
votes
0
replies
422
views
STARsolo for multiome GEX: trimming (--clip5pNbases) & whitelist handling
STARSolo
multiome
whitelist
clip5pNbases
10 weeks ago by
IrK
▴ 100
1
vote
8
replies
771
views
Featurecounts: Unexpected number of features
featurecounts
9 weeks ago by
JourneyToAbyss
▴ 250
4
votes
13
replies
11k
views
7 follow
GVSA: problem with gene identifier
gvsa
RNA-Seq
gsea
updated 10 weeks ago by
Saravana
• 0 • written 8.2 years ago by
cmgraef
▴ 10
0
votes
0
replies
388
views
News:
Workshop: Virtual Variant Detection, May 20-22
VariantDetection
Workshop
UConn
10 weeks ago by
zsc25001
▴ 10
1
vote
3
replies
664
views
Best way to combine biological replicate peaks?
ATAC-seq
updated 10 weeks ago by
jared.andrews07
★ 19k • written 10 weeks ago by
SpartanII
• 0
1
vote
5
replies
651
views
Filtering HMMSCAN Domtblout Output when using Metagenomic Sequence as Input
hmmscan
sequences
domtblout
metagenomic
updated 10 weeks ago by
Mensur Dlakic
★ 29k • written 10 weeks ago by
Jane123
• 0
0
votes
1
reply
488
views
I have doubts regarding conducting meta-analysis of differentially expressed genes
meta-analysis
Differential-Gene-Expression
updated 10 weeks ago by
LChart
5.0k • written 10 weeks ago by
Rohan
• 0
1
vote
7
replies
857
views
Create local Blast database alias with blastdb_aliastool fails
blast
updated 7 weeks ago by
GenoMax
152k • written 10 weeks ago by
etienne
• 0
3
votes
2
replies
600
views
Why is this interaction result not significant in DESeq2
DEG
DE
interaction
DESeq2
RNA-seq
updated 10 weeks ago by
yura.grabovska
▴ 780 • written 10 weeks ago by
Guillermo
▴ 10
0
votes
2
replies
517
views
Combining scRNA-seq datasets that have been processed differently
immunology
Seurat
7 weeks ago by
S
• 0
6
votes
8
replies
13k
views
7 follow
WGCNA package in R: dendogram plot error
wgcna
R
updated 10 weeks ago by
GenoMax
152k • written 8.5 years ago by
zyr123
▴ 40
1
vote
1
reply
441
views
Problem with galaxy's Maxquant
Proteomics
Maxquant
Galaxy
updated 10 weeks ago by
GenoMax
152k • written 10 weeks ago by
Chris K
▴ 10
0
votes
0
replies
391
views
Workflow for DE after high-resolution CibersortX deconvolution
CibersortX
Deconvolution
10 weeks ago by
Aspire
▴ 380
0
votes
0
replies
376
views
Is there any way to treat antibody titers as continuous data for microbiome analysis?
antibody-titers
immunology
microbiome
10 weeks ago by
nmarin
• 0
56
votes
11
replies
50k
views
When and why is bwa aln better then bwa mem?
aln
comparison
bwa
mem
10 weeks ago by
dariober
15k
2
votes
1
reply
439
views
How to deal polyploid and aneuploid sugarcane genome R570 for variant calling
aneuploid
updated 9 weeks ago by
dthorbur
★ 3.0k • written 10 weeks ago by
analyst
▴ 70
2
votes
2
replies
495
views
False positives annotation of Augustus?
Augustus
training
updated 10 weeks ago by
lieven.sterck
15k • written 10 weeks ago by
Joseph
• 0
1
vote
2
replies
614
views
Mapping SNPs to genes
biomart
SNP
ensembl
r
gene
10 weeks ago by
Nigussie
• 0
0
votes
2
replies
467
views
Rockhopper Reference Genome Error
Rockhopper
10 weeks ago by
ATS
▴ 10
0
votes
0
replies
356
views
What can cause Faststructure to produce really high K clusters as optimal (e.g. 12 - 14)
SNP
vcf
population
10 weeks ago by
Drew
▴ 10
1
vote
7
replies
1.5k
views
Trouble finding datasets
GEO
SRA
updated 10 weeks ago by
ehaag
▴ 90 • written 20 months ago by
SHXVRR
▴ 20
4
votes
2
replies
1.2k
views
Imputation server failing to see samples in VCF files
imputation
VCF
updated 10 weeks ago by
Andresa Raquel Capodifoglio
• 0 • written 21 months ago by
Ben
▴ 10
0
votes
3
replies
539
views
Read Mapping of Reads to Reference Genome Shows Extreme Bias
mapping
read
bwa-mem
coverage
updated 10 weeks ago by
Michael
56k • written 10 weeks ago by
Lawrence
• 0
0
votes
0
replies
365
views
News:
Introduction to Python for Biologists (IPYB01)
Python
updated 10 weeks ago by
GenoMax
152k • written 10 weeks ago by
oliverhooker
▴ 110
121,537 results • Page
11 of 2431
Recent Votes
Comment: Mitochondrial annotation tool for algae
Answer: Mitochondrial annotation tool for algae
A: Bioinformatics NGS data analysis
Extracting only the sequence from fastq files
Comment: How to rank genes for GSEA using edgeR-LRT results ?
Comment: How to rank genes for GSEA using edgeR-LRT results ?
Comment: PCA interpretation
Recent Locations •
All
Memphis, TN,
2 minutes ago
Norway,
2 minutes ago
Austria/Vienna,
4 minutes ago
UK,
5 minutes ago
ETH Zurich,
6 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
8 minutes ago
United States,
11 minutes ago
Recent Awards •
All
Popular Question
to
trkfs
▴ 10
Popular Question
to
gdaly9000
▴ 10
Scholar
to
Gordon Smyth
★ 8.2k
Popular Question
to
Eduardo
▴ 20
Popular Question
to
firefox91
• 0
Popular Question
to
Anjan
▴ 840
Popular Question
to
asalimih
▴ 60
Recent Replies
Comment: Trouble getting representatives from clustered_nr database
by
GenoMax
152k
Got curious about this record. It turns out that `prf` (Protein Research Foundation) record(s) actually predate GenBank. They are included …
Comment: why bwa-mem only return one read with pair-read end
by
GenoMax
152k
Have you tried name sorting the alignment file and/or viewing the alignment in IGV? Paired-end reads are not guaranteed to be next to each …
Comment: Mitochondrial annotation tool for algae
by
firefox91
• 0
Many thanks to both of you !
Comment: How to match clinical information with expression data in R
by
Arup Ghosh
3.3k
Share an excerpt of the sample names from the expression data and clinical information.
Comment: Mapping to a template sequece
by
QX
▴ 70
so I have a template with that design, where some bases are fixed, others are diverse on purpose. However, those reads that generated from …
Comment: Mapping to a template sequece
by
michael.ante
★ 4.0k
Without more details about your problem, I'd suggest you to look at other amplicon-analysis workflows like [dada2][1] or [qiime2][2]. These…
Comment: Help using ShinyCell2 and Seurat v5 object.
by
antonioggsousa
3.4k
I never used this ShinyApp, but are you sure you can provide `SCT` assays? According to the documentation of `makeShinyFiles` you must prov…
Comment: how to produce your own Nx plot
by
Mark
★ 1.6k
What is an Nx plot and what is it you're trying to visualise?
Answer: Identify SNP, Indel variants from a List of FASTA sequence
by
Mark
★ 1.6k
Your best bet is to output your variant calls in a `vcf` then using something like `snpeff` to annotate variants with the effect. Callin…
Comment: Best Tool for Fast RNA-Seq Transcriptome Alignment to Extract Unmapped Reads
by
dsull
★ 7.6k
When we did a huge revision of the kallisto source code, we found it to cumbersome to maintain the --fusion option. However, we have plans…
Comment: Which Reference Hg38 or T2T?? Both??
by
Jon
• 0
I have actually been working on this for about 2 years (not all samples), I only stumbled onto the Naegleri Fowleri NF001 about 4 months ag…
Comment: Which Reference Hg38 or T2T?? Both??
by
Jon
• 0
I can only use tools that are available on Usegalaxy.org Europe Site. BBmap on there will only do FASTQ Does Minimap2 align the contigs…
Comment: Which Reference Hg38 or T2T?? Both??
by
GenoMax
152k
BBMap will do fasta input. With ~4-5 kb contigs you should switch to using `minimap2` ([**LINK**][1]) for alignments. You can simply use th…
Comment: Which Reference Hg38 or T2T?? Both??
by
Jon
• 0
I have read that Eukaryotes most difficult to classify, I can see now the issue, they have high similarity to human dna. Amoebas, such as…
Answer: Can I transduce HEK293T with Cas9 lentivirus followed by transfection with sgRNA
by
jared.andrews07
★ 19k
You might be interested in the [MuLE system](https://www.addgene.org/kits/mule-system/), which I've had some success with in the past. It's…
Traffic: 3522 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6