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121,944 results • Page
144 of 2439
Sort: Rank
Rank
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Votes
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1
vote
2
replies
1.5k
views
how to remove FORMAT field in vcf field
genotypes
vcf
19 months ago by
Karibu
• 0
0
votes
0
replies
510
views
calculating genetic risk score using HLA DQ haplotypes
HLA
PRS
DQ
haplotypes
19 months ago by
seta
★ 1.9k
1
vote
1
reply
1.1k
views
How to manually sort the legend of gseaplot2 (enrichplot, clusterProfiler) result?
gseaplot2
enrichplot
ggplot2
clusterProfiler
updated 19 months ago by
fracarb8
★ 1.7k • written 19 months ago by
fabian
▴ 10
0
votes
0
replies
440
views
How to do blastp for MCScanx if i have genomic protein and gff?
synteny
MCScanx
19 months ago by
bioinfo223
▴ 10
2
votes
3
replies
952
views
Spearman correlation for ATAC data
correlation
Spearman
updated 19 months ago by
gglim
▴ 220 • written 19 months ago by
daffodil
▴ 10
0
votes
0
replies
500
views
News:
Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R
manipulation
tidyverse
data
19 months ago by
Sole
• 0
0
votes
2
replies
679
views
BMI as a continuous variable is my outcome, which type data i should put to calculate
transcriptomics
19 months ago by
jiefei
• 0
0
votes
0
replies
446
views
Missing NaNs in correlation matrix for fine-mapping
GWAS
Finemapping
plink
19 months ago by
always_learning
★ 1.2k
0
votes
0
replies
363
views
RNA-seq power analysis
RNA-seq
updated 19 months ago by
Ram
45k • written 19 months ago by
fanx
▴ 80
0
votes
3
replies
1.2k
views
IGV read color ,what is inferred insert size and expected insert size mean?
IGV
updated 19 months ago by
GenoMax
154k • written 19 months ago by
Tao
▴ 40
33
votes
12
replies
4.9k
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
19 months ago by
karlaarz
▴ 110
4
votes
4
replies
1.4k
views
Correlation for ATAC-Seq and Chip-Seq
RNA-Seq
Chip-Seq
ATAC-Seq
19 months ago by
qudrat.nii
▴ 40
1
vote
2
replies
1.1k
views
TCGA metadata intersection
R
TCGA
GenomicDataCommons
TCGAbiolinks
19 months ago by
Darked89
4.7k
0
votes
0
replies
1.0k
views
Job:
Postdoctoral Fellow / Staff Scientist - Genomic Data Modeling Lab
genomics
machine-learning
Seattle
updated 19 months ago by
Ram
45k • written 19 months ago by
pejman.m
• 0
0
votes
1
reply
558
views
FIMO keep all results
FIMO
updated 19 months ago by
Mensur Dlakic
★ 30k • written 19 months ago by
mathalfilip
• 0
2
votes
2
replies
1.1k
views
get flanking sequences of a SNP in a vcf
vcf
sequences
updated 19 months ago by
Pierre Lindenbaum
166k • written 19 months ago by
erl1977
▴ 60
4
votes
0
replies
919
views
Herald:
The Biostar Herald for Monday, February 26, 2024
herald
19 months ago by
Biostar
3.6k
0
votes
3
replies
1.0k
views
How do you install ExpansionHunterDenovo on a Mac?
ExpansionHunterDenovo
updated 19 months ago by
Ram
45k • written 19 months ago by
michael.flower.14
▴ 210
3
votes
2
replies
1.2k
views
PCA plot analysis
rna-seq
updated 19 months ago by
jared.andrews07
★ 19k • written 19 months ago by
Sanjukta
• 0
2
votes
2
replies
726
views
How to interpret blastn results output
blast
19 months ago by
neha.jnu463
• 0
3
votes
8
replies
1.4k
views
Huge decrease of BUS records using bustools
single-cell
bustools
10X
19 months ago by
julien.wollbrett
• 0
2
votes
3
replies
1.0k
views
Kmergenie install bug
Kmergenie
19 months ago by
joshua.j.wright
▴ 10
4
votes
3
replies
3.2k
views
How to deal with gaps during translation with biopython
sequence
updated 19 months ago by
fournier.berlin
▴ 10 • written 6.4 years ago by
sunyeping
▴ 110
0
votes
1
reply
580
views
NCBIminer is not available
ncbiminer
updated 19 months ago by
Joe
22k • written 19 months ago by
strive
• 0
0
votes
1
reply
454
views
OpenCravat syntax error during annotation
OpenCravat
updated 19 months ago by
Ram
45k • written 19 months ago by
Monika
• 0
0
votes
2
replies
768
views
annotating single-cell clusters from gene lists
annotation
FindAllMarkers
Seurat
cell-type
updated 19 months ago by
Ram
45k • written 19 months ago by
Assa Yeroslaviz
★ 1.9k
4
votes
5
replies
2.5k
views
Any ways of extracting and filtering read sequences from cram files with samtools?
samtools
cram
reads
sequence
18 months ago by
sacryt
• 0
0
votes
0
replies
477
views
Rosalind problem sum: Mendel's First Law
rosalind
updated 19 months ago by
GenoMax
154k • written 19 months ago by
Nikita
• 0
0
votes
4
replies
926
views
PCA Plot in Single-cell RNA-seq Data
RNA-seq
PCA
single
cell
19 months ago by
Darya
• 0
2
votes
2
replies
1.2k
views
calculate the heterozygosity of an assembly
plant
assembly
Genome
genome
heterozygosity
updated 19 months ago by
Corentin
▴ 660 • written 19 months ago by
san96
▴ 190
0
votes
0
replies
524
views
How to calculate the percentage of hydrophobic amino acids?
genome
RNA-Seq
Splicing
sequencing
19 months ago by
Apex92
▴ 320
1
vote
1
reply
631
views
Is there any database for transposable elements in cactus plants
EDTA
transposable-elements
updated 19 months ago by
Ram
45k • written 19 months ago by
rj.rezwan
▴ 20
0
votes
0
replies
517
views
RNA-seq GSEA cutoff
GSEA
19 months ago by
maplewj
▴ 20
7
votes
7
replies
2.1k
views
NGS tertiary analysis
classification
variant-annotation
updated 19 months ago by
bharata1803
▴ 580 • written 19 months ago by
n.awad
▴ 20
2
votes
0
replies
1.2k
views
Tutorial:
Premade library preparation – considerations, tips and tricks (II)
Illumina.
Premade-library.
NovaSeqX.
19 months ago by
Novogene
▴ 510
0
votes
2
replies
1.0k
views
Visualize and access gvcf/vcf files
genomics
vcf
updated 14 months ago by
venkat
▴ 10 • written 19 months ago by
QX
▴ 80
0
votes
0
replies
515
views
filterBam (Augustus) results explanation
GenomeAnnotation
RNASeq
Annotation
filterBam
Augustus
updated 19 months ago by
Kinoppy
• 0 • written 21 months ago by
Sanam
• 0
0
votes
2
replies
743
views
Why does Phred+ encoding changes after trimming fastq files??
fastqc
fastq
phred
quality
trimming
updated 19 months ago by
GenoMax
154k • written 19 months ago by
Bikal
• 0
0
votes
0
replies
732
views
xmlrpc.client.ProtocolError while deeptools bigwigAverage
deeptools
19 months ago by
Aki
▴ 20
0
votes
0
replies
527
views
Exploring CRUD Operations with Mongoose and MongoDB in Bioinformatics
mongodb
mongoose
updated 18 months ago by
Ram
45k • written 19 months ago by
zainabi8077
▴ 20
0
votes
0
replies
488
views
News:
Online course: Reproducibility in Bioinformatics
Docker
Singularity
WorkflowManagementSystems
Reproducibility
19 months ago by
Physalia-courses
★ 2.6k
1
vote
3
replies
1.3k
views
CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
benchmarking
truvari
cnv
updated 19 months ago by
DBScan
▴ 530 • written 19 months ago by
emma.a
▴ 130
0
votes
1
reply
786
views
ENA fastq file shown as Paired-end but has 2 Run Accessions
ENA
end
paired
updated 19 months ago by
GenoMax
154k • written 19 months ago by
Aaliya
• 0
0
votes
0
replies
650
views
microbiomeMarker installation
install
microbiomeMarker
docker
19 months ago by
fabiomarcelomedvet
▴ 10
1
vote
0
replies
528
views
Tool:
HFKReads, an ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
kmer
organelle
metagenomic
assembly
19 months ago by
Huiyang
▴ 200
4
votes
6
replies
2.6k
views
How to interpret the output from a DESeq2 WALD test analysis in R to compare gene expression in two different tissues.
Wald
gene-expression-comparison
DESeq2
19 months ago by
QuayQ BioMe
• 0
3
votes
1
reply
892
views
Job:
AN INTEGRATED IN SILICO AND IN VITRO STUDY ON THE DEVELOPMENT OF A COMPUTATIONAL METHOD FOR THE PREDICTION OF O-GLCNAC MODIFIED PROTEINS
proteomics
updated 19 months ago by
Ram
45k • written 19 months ago by
Anooshian
• 0
0
votes
1
reply
659
views
Validate the assembly of unmapped reads by remapping the original reads back to the assembled sequence
unmapped_reads.
assembly.
Paired-end_reads
updated 19 months ago by
GenoMax
154k • written 19 months ago by
Sony
▴ 20
1
vote
2
replies
757
views
A question about using HISAT2 without biological replicates
RNA-seq
HISAT2
19 months ago by
vinayjrao
▴ 260
1
vote
0
replies
405
views
How to process Iso-seq subreads in fastq downloaed from NCBI SRA database ?
pacbio
19 months ago by
2310691738
▴ 10
121,944 results • Page
144 of 2439
Recent Votes
Answer: Orthofinder Not Mapping to Any Orthogroups
Answer: Orthofinder Not Mapping to Any Orthogroups
Answer: LASSO parameter selection: lambda min vs lambda 1se
Answer: LASSO parameter selection: lambda min vs lambda 1se
Answer: What happened to biomart.org
Comment: Help understanding this per base sequence content failure fastqc plot
Comment: Help understanding this per base sequence content failure fastqc plot
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Comment: Genome Contamination Check with Blobtools
by
GenoMax
154k
> I generated a genome assembly and wanted to check for contaminant sequences Why do you think you have contaminant sequences in your asse…
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
GenoMax
154k
> if you can recommend me tools You can use `randomreads` from BBMap suite to generate short illumina reads with known mutations. A guid…
Answer: Orthofinder Not Mapping to Any Orthogroups
by
saamhasan55
▴ 30
I managed to solve the issue in the end. Oddly enough I simply switched the alignment method in Orthofinder from blast to mmseqs and it gav…
Comment: LASSO parameter selection: lambda min vs lambda 1se
by
nuorain
▴ 40
Thank you so much for your input!!!!
Answer: LASSO parameter selection: lambda min vs lambda 1se
by
Mensur Dlakic
★ 30k
You are asking us to help you justify something after the fact. You seem to have picked a course of action arbitrarily, though that does no…
Comment: Help understanding this per base sequence content failure fastqc plot
by
Mensur Dlakic
★ 30k
Make this an answer rather than comment?
Comment: Feasibility of detecting PCR-chimeric reads with Machine Learing (ML) for organe
by
andres.firrincieli
3.9k
While there is no specific rule against the use of ChatGPT or similar, this must be clearly stated in the answer
Comment: cellranger mkref fail/error
by
Arup Ghosh
3.4k
As you managed to run each organism separately successfully. Does the combined size of the FASTA files exceed the amount of memory you spec…
Comment: different methods target identification
by
ATpoint
89k
Oh come on... https://www.biostars.org/p/75548/ https://www.biostars.org/p/357878/
Answer: Feasibility of detecting PCR-chimeric reads with Machine Learing (ML) for organe
by
teamardigen
• 0
Your idea is definitely feasible on Illumina reads. Since curated chimera datasets are rare, most people simulate them in silico (concatena…
Comment: Linear regression vs DESeq2 models for DEG analysis
by
ATpoint
89k
+1 Your answer should be the top-voted answer in this thread https://www.biostars.org/p/284775/ as it actually addresses conceptual diffe…
Comment: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
It is not clear to me that you can meaningfully correct for 5 different batches with two samples a piece.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
GenoMax
154k
> I am not sure if there would be primer dimer sequences I should have said adapter dimers above. Correction made.
Comment: Help understanding this per base sequence content failure fastqc plot
by
lieven.sterck
16k
that 151st base added is a base to ignore (it's a kind of random addition) ... if I recall correctly it's a consequence of the technology. …
Comment: Linear regression vs DESeq2 models for DEG analysis
by
FioG
• 0
@swbarnes2 Thank you for your response! I am new to RNA seq analysis and was originally recommended to use the LM method following cqn and …
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