Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
121,943 results • Page
143 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
680
views
News:
The 2024 Canadian Bioinformatics Workshops are here!
CBW
workshop
training
19 months ago by
bioinformatics.ca
• 0
2
votes
2
replies
891
views
Error from cgat gtf2gtf --method=genes-to-unique-chunks
RNA-Seq
GTF
cgat
19 months ago by
PK
▴ 130
2
votes
2
replies
1.1k
views
Choosing right GSEA background gene sets
GSEA
enrichment
analysis
updated 19 months ago by
jv
★ 1.9k • written 19 months ago by
yxwucq
• 0
1
vote
1
reply
839
views
Bioinformatic tools to map mutations to pathways
pathway-analysis
updated 19 months ago by
Ram
45k • written 19 months ago by
eleni.psar
• 0
0
votes
1
reply
725
views
Best Freebayes parameter for haploid variant detection
Freebayes
detection
variant
updated 19 months ago by
LauferVA
4.8k • written 19 months ago by
A_heath
▴ 170
3
votes
12
replies
5.7k
views
samtools mpileup keeps making an empty file
samtools
pileup
updated 19 months ago by
tbg
▴ 120 • written 6.7 years ago by
James Reeve
▴ 130
3
votes
6
replies
1.8k
views
somatic variant calling without matched normal in long-reads
variants
cancer
illumina
ONT
nanopore
9 months ago by
eebloom
▴ 110
0
votes
3
replies
994
views
Protocol to combine WGS with Nanopore for Structural Variant confirmation?
wgs
updated 19 months ago by
trausch
★ 2.0k • written 19 months ago by
optimistsso4co3
▴ 140
3
votes
3
replies
1.5k
views
Whole-genome alignment visualization
cactus
maf
bigmaf
updated 19 months ago by
SanjidaR_NCBI
▴ 70 • written 19 months ago by
gubrins
▴ 350
5
votes
9
replies
2.5k
views
Porechop output?
porechop
Nanopore
updated 19 months ago by
GenoMax
154k • written 19 months ago by
giulia.trauzzi
▴ 30
0
votes
2
replies
1.6k
views
Downsampling of cells in scRNAseq DE analysis
differential-expression
DE
scRNAseq
updated 17 months ago by
Ram
45k • written 2.4 years ago by
mytp
• 0
0
votes
0
replies
450
views
Which fasta file for Variant Calling using RNASeq
RNA-Seq
Variant-Calling
updated 19 months ago by
Ram
45k • written 19 months ago by
andrebolerbarros
• 0
0
votes
0
replies
425
views
Do I have enough reads for virome analyis?
metagenomics
HiSeq
virome
statistics
reads
19 months ago by
Mageiros
• 0
0
votes
0
replies
406
views
Outputs from FarmCPU (rMPV package)
R
FarmCPU
GWAS
19 months ago by
AndrMod
• 0
0
votes
4
replies
1.4k
views
DESeq2 for two sample conditions
DESeq2
updated 19 months ago by
Michael
56k • written 19 months ago by
Aaliya
• 0
1
vote
1
reply
628
views
DESEQ2 Code
NGS
updated 19 months ago by
ATpoint
89k • written 19 months ago by
ananta.kapoor
• 0
2
votes
2
replies
1.0k
views
How to parallelize running vg autoindex to create graph references from VCFs with vg?
vg
19 months ago by
Ricky
▴ 10
5
votes
5
replies
4.5k
views
WGCNA HeatMap correlating modules and sample conditions
RNAseq
heatmap
WGCNA
conditions
clustering
updated 19 months ago by
GenoMax
154k • written 3.6 years ago by
Raito92
▴ 100
0
votes
1
reply
1.0k
views
Visualizing module eigene relationships in cytoscape
network
WGCNA
cytoscape
updated 19 months ago by
Scooter
▴ 310 • written 19 months ago by
MARK
• 0
0
votes
2
replies
1.0k
views
Alternative tool or website of PathogenFinder
WGS
bacteria
updated 19 months ago by
GenoMax
154k • written 20 months ago by
Pegasus
▴ 130
6
votes
2
replies
1.3k
views
How I should set `STAR` parameters to keep all the intronic reads?
STAR
mapping
updated 19 months ago by
dsull
★ 7.7k • written 19 months ago by
Dan
▴ 180
0
votes
1
reply
508
views
samsift can't find the AS tag to filter a bam file generated using bowtie2
samsift
bowtie2
updated 16 months ago by
Pierre Lindenbaum
166k • written 19 months ago by
michael.flower.14
▴ 210
9
votes
10
replies
5.1k
views
PDB residue serial inconsistency and PDB id&UniProt ID mismatch
pdb
UniProtID
pdbID
updated 19 months ago by
Wayne
★ 2.1k • written 19 months ago by
Nafi
• 0
0
votes
4
replies
1.1k
views
Dsuite Dinvestigate error but no indication as to the source
Dsuite
19 months ago by
Drew
▴ 10
1
vote
1
reply
1.6k
views
getting error when transfer labels for my scRNAseq data using FindTransferAnchors
scRNAseq
19 months ago by
Sara
▴ 280
0
votes
0
replies
409
views
Discrepancy in Number of SRA between NCBI Website and BigQuery service (SQL request)
NCBI
SQL
BigQuery
SRA
19 months ago by
marie.harmel
▴ 10
0
votes
1
reply
644
views
Issue with Image Display and Saving on AgriGO v2 Platform
plants
AgriGO
gene-ontology
non-model
updated 19 months ago by
Ram
45k • written 19 months ago by
Nelo
▴ 20
2
votes
5
replies
3.3k
views
How to root this tree?
Phylogeny
Tree
Root
updated 19 months ago by
Michael
56k • written 19 months ago by
Mirko
• 0
1
vote
7
replies
2.2k
views
limma eBayes error in analysis of Illumina HumanHT-12 V4.0 expression beadchip data
R
beadchip
limma
microarray
Illumina
updated 19 months ago by
1769mkc
★ 1.3k • written 19 months ago by
accibio
▴ 20
1
vote
4
replies
1.4k
views
igvShiny issues with loading local bams
R
IGV
shiny
updated 19 months ago by
Malcolm.Cook
★ 1.5k • written 19 months ago by
genya35
▴ 50
5
votes
2
replies
872
views
Granges manipulation
granges
19 months ago by
Bastien Hervé
6.5k
2
votes
3
replies
1.1k
views
Practical Haplotype Graph
methodID
PHG
updated 19 months ago by
lcj34
▴ 420 • written 19 months ago by
yifangt86
▴ 60
0
votes
0
replies
428
views
Choosing TPM cutoff for PCR validation
PCR
TPM
19 months ago by
sleepystudent
• 0
5
votes
4
replies
2.4k
views
Manhattan plot for TWAS results
TWAS
GWAS
manhattan-plot
19 months ago by
rheab1230
▴ 150
2
votes
3
replies
1.4k
views
HLA genotyping of whole genome sequencing data
HLA
genotyping
WGS
19 months ago by
Biomed-jeh
▴ 70
0
votes
0
replies
421
views
Building Ensembl database for HMMER
hmmer
updated 19 months ago by
Ram
45k • written 19 months ago by
J
• 0
0
votes
1
reply
1.1k
views
Multiple replicates with one SoapDenovo-Trans run?
rna-seq
soapdenovo-trans
transcriptome
updated 19 months ago by
nargisbashir10
• 0 • written 3.8 years ago by
nina.maryn
▴ 30
3
votes
1
reply
1.3k
views
gene alignment (microsynteny)
alignment
microsynteny
updated 19 months ago by
cmdcolin
★ 4.3k • written 19 months ago by
gubrins
▴ 350
0
votes
0
replies
705
views
Any tool that can give me a list of DNA/RNA aptamers against specific protein as the in vitro SELEX library to screen the sequences?
aptamer
protein
SELEX
19 months ago by
J.F.Jiang
▴ 930
1
vote
2
replies
827
views
Deseq2 shows differential expression while TPM values are not significantly different
Deseq2
TPM
updated 19 months ago by
jv
★ 1.9k • written 19 months ago by
Aiswarya
▴ 20
2
votes
1
reply
705
views
ATAC-seq downstream analysis
ATAC-seq
diffbind
updated 19 months ago by
ATpoint
89k • written 19 months ago by
maplewj
▴ 20
2
votes
7
replies
2.0k
views
Selecting query format for repeated calls to NCBI's API
NCBI
esummary
elink
API
efetch
updated 18 months ago by
GenoMax
154k • written 19 months ago by
LauferVA
4.8k
0
votes
0
replies
467
views
Predictor of Activation Domains
Protein
Domain
19 months ago by
buhbs
▴ 30
0
votes
1
reply
644
views
Multi-level multi-class CNN
cancer
cnn
rstudio
python
updated 19 months ago by
Mensur Dlakic
★ 30k • written 19 months ago by
jain72744
▴ 10
12
votes
7
replies
8.9k
views
6 follow
Convert FPKM to TPM in R
r
TPM
normalization
meta-analysis
updated 19 months ago by
Ram
45k • written 3.0 years ago by
AlexStar
▴ 200
5
votes
5
replies
5.0k
views
6 follow
Sbatch slurm job
cluster
sbatch
slurm
19 months ago by
marco.barr
▴ 180
1
vote
1
reply
580
views
biological replicate in STAR command
RNAseq
updated 19 months ago by
swbarnes2
15k • written 19 months ago by
Sara
▴ 280
1
vote
1
reply
735
views
About getorf result
getorf
ORF
updated 19 months ago by
shelkmike
★ 1.8k • written 19 months ago by
ZZOYEA
▴ 20
0
votes
1
reply
619
views
Merging snpEff file and extracting novel mutations
sars-cov-2
phylogenetic
novelmutations
updated 19 months ago by
Pierre Lindenbaum
166k • written 19 months ago by
realtreeecat
• 0
1
vote
2
replies
1.5k
views
how to remove FORMAT field in vcf field
genotypes
vcf
19 months ago by
Karibu
• 0
121,943 results • Page
143 of 2439
Recent Votes
Answer: LASSO parameter selection: lambda min vs lambda 1se
Answer: LASSO parameter selection: lambda min vs lambda 1se
Answer: What happened to biomart.org
Comment: Help understanding this per base sequence content failure fastqc plot
Comment: Help understanding this per base sequence content failure fastqc plot
Answer: Linear regression vs DESeq2 models for DEG analysis
Comment: Linear regression vs DESeq2 models for DEG analysis
Recent Locations •
All
United States,
3 minutes ago
United States,
12 minutes ago
United Kingdom,
14 minutes ago
Philippines,
35 minutes ago
Perth, Australia,
43 minutes ago
South Korea,
1 hour ago
Stony Brook University, NY,
1 hour ago
Recent Awards •
All
Popular Question
to
saamhasan55
▴ 10
Popular Question
to
desptsp
• 0
Good Answer
to
i.sudbery
22k
Teacher
to
Istvan Albert
103k
Popular Question
to
saruman
▴ 10
Popular Question
to
frarodmar17
• 0
Popular Question
to
nuorain
▴ 40
Recent Replies
Answer: Orthofinder Not Mapping to Any Orthogroups
by
saamhasan55
▴ 10
I managed to solve the issue in the end. Oddly enough I simply switched the alignment method in Orthofinder from blast to mmseqs and it gav…
Comment: LASSO parameter selection: lambda min vs lambda 1se
by
nuorain
▴ 40
Thank you so much for your input!!!!
Answer: LASSO parameter selection: lambda min vs lambda 1se
by
Mensur Dlakic
★ 30k
You are asking us to help you justify something after the fact. You seem to have picked a course of action arbitrarily, though that does no…
Comment: Help understanding this per base sequence content failure fastqc plot
by
Mensur Dlakic
★ 30k
Make this an answer rather than comment?
Comment: Feasibility of detecting PCR-chimeric reads with Machine Learing (ML) for organe
by
andres.firrincieli
3.9k
While there is no specific rule against the use of ChatGPT or similar, this must be clearly stated in the answer
Comment: cellranger mkref fail/error
by
Arup Ghosh
3.4k
As you managed to run each organism separately successfully. Does the combined size of the FASTA files exceed the amount of memory you spec…
Comment: different methods target identification
by
ATpoint
89k
Oh come on... https://www.biostars.org/p/75548/ https://www.biostars.org/p/357878/
Answer: Feasibility of detecting PCR-chimeric reads with Machine Learing (ML) for organe
by
teamardigen
• 0
Your idea is definitely feasible on Illumina reads. Since curated chimera datasets are rare, most people simulate them in silico (concatena…
Comment: Linear regression vs DESeq2 models for DEG analysis
by
ATpoint
89k
+1 Your answer should be the top-voted answer in this thread https://www.biostars.org/p/284775/ as it actually addresses conceptual diffe…
Comment: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
It is not clear to me that you can meaningfully correct for 5 different batches with two samples a piece.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
GenoMax
154k
> I am not sure if there would be primer dimer sequences I should have said adapter dimers above. Correction made.
Comment: Help understanding this per base sequence content failure fastqc plot
by
lieven.sterck
16k
that 151st base added is a base to ignore (it's a kind of random addition) ... if I recall correctly it's a consequence of the technology. …
Comment: Linear regression vs DESeq2 models for DEG analysis
by
FioG
• 0
@swbarnes2 Thank you for your response! I am new to RNA seq analysis and was originally recommended to use the LM method following cqn and …
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
curious
▴ 890
Thank you, the adapter sequences are specified as CTGTCTCTTATACACATCT+ATGTGTATAAGAGACA is the SampleSheet.csv file from the sequencing run.…
Comment: how to explain the sample size discrepancy in UCSC Xena
by
nuorain
▴ 40
Thank you very much.
Traffic: 4189 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6