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121,946 results • Page
146 of 2439
Sort: Rank
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Votes
Replies
0
votes
2
replies
659
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Comparing TMM values between different RNA-seq experiments
RNA-seq
19 months ago by
Phiphi
• 0
0
votes
2
replies
872
views
Auxillary file
IgBLAST
updated 19 months ago by
Jesse
▴ 880 • written 19 months ago by
Bharti
• 0
3
votes
7
replies
1.8k
views
How does kallisto handle multi mapped reads?
kallisto
updated 19 months ago by
dsull
★ 7.7k • written 19 months ago by
bioinfo
▴ 160
0
votes
3
replies
1.2k
views
DE Analysis Between A Subset Seurat Object Versus Original Seurat Object
scRNA-seq
seurat
19 months ago by
Zeddicus
• 0
6
votes
5
replies
1.4k
views
IGV signal visualization, low and high signals
ATAC-seq
IGV
updated 19 months ago by
Istvan Albert
103k • written 19 months ago by
Orange
▴ 30
0
votes
7
replies
1.5k
views
Trying to extract .cram file read sequences into array
CRAM
pysam
reads
samtools
19 months ago by
sacryt
• 0
2
votes
14
replies
3.6k
views
jellyfish installed in conda, but 'command not found' when I try to run it
jellyfish
conda
updated 19 months ago by
Joe
22k • written 19 months ago by
michael.flower.14
▴ 210
1
vote
3
replies
1.4k
views
KEGG and GO analysis with Daphnia magna Uniprot IDs
RNA-Seq
R
updated 19 months ago by
Penbiotox
• 0 • written 5.1 years ago by
Hannes
▴ 60
1
vote
1
reply
682
views
sinto tool
scATAC-seq
SIgnac
updated 19 months ago by
jared.andrews07
★ 19k • written 19 months ago by
Manhezz
• 0
0
votes
5
replies
1.2k
views
Linking metadata in non-Pubmed Commons indexed journal articles to records housed by NCBI
NCBI
Entrez
SRA
Journal
Metadata
19 months ago by
LauferVA
4.8k
0
votes
2
replies
1.0k
views
Homer findGO.pl questions
ATACseq
19 months ago by
Ronin
▴ 10
0
votes
3
replies
1.4k
views
Increasing per base G content in QC sequencing files
FastQC
GC-content
QC
NovaSeq
updated 19 months ago by
GenoMax
154k • written 19 months ago by
robertsr
• 0
0
votes
2
replies
1.0k
views
Run Cellranger-ATAC on CNGB fastq files
Cellranger-ATAC
CNGB
19 months ago by
TomCat
• 0
1
vote
3
replies
1.4k
views
Job:
1 Bioinformatician position in San Sebastian (Spain)
postdoc
phd
proteomics
scRNAseq
transcriptomics
19 months ago by
ev97
▴ 40
4
votes
4
replies
1.4k
views
Allele-specific expression in interspecific hybrids
RNA-seq
allele-specific-expression
interspecific-hybrids
19 months ago by
Sandy
▴ 20
2
votes
5
replies
1.7k
views
How to identify biallelic mutations called using WES data?
mutect2
gatk
wes
mutation
19 months ago by
tanbiswas6
▴ 10
0
votes
3
replies
953
views
WGCNA from Salmon Output
wgcna
salmon
tpm
rna-seq
updated 19 months ago by
jv
★ 1.9k • written 19 months ago by
Adrij Pawan
• 0
0
votes
0
replies
648
views
Amplicon analysis from nanopore sequencing
ASV
ONT
amplicon
19 months ago by
H.Hasani
★ 1.0k
1
vote
2
replies
934
views
Forum:
Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity
Career-Gap
career-reentry
updated 19 months ago by
ATpoint
89k • written 19 months ago by
ashaneev07
▴ 50
0
votes
0
replies
665
views
News:
Online course: Spatial Omics in R/Bioconductor
R
Spatial-Omics
Bioconductor
tidyverse
transcriptomics
updated 19 months ago by
Ram
45k • written 19 months ago by
Physalia-courses
★ 2.6k
5
votes
6
replies
2.7k
views
PCoA in ggplot2 and Adonis results
R
PCoA
19 months ago by
rene.j.erhardt
▴ 30
0
votes
2
replies
816
views
Exception : [rapidjson internal assertion failure: IsObject()]
salmon
19 months ago by
Andrea
▴ 10
10
votes
10
replies
1.8k
views
Message seen when performing alignment
bwa
alignment
updated 19 months ago by
GenoMax
154k • written 19 months ago by
K
• 0
0
votes
2
replies
1.7k
views
Problem with interpreting output from Monocle3 graph_test()
trajectory_analysis
Monocle3
updated 14 months ago by
synat.keam
▴ 120 • written 2.9 years ago by
Angelina_G
▴ 10
0
votes
3
replies
850
views
gene coordinates data base
coordinates
simulation
gwas
sim1000
gene
19 months ago by
Eliza
▴ 30
2
votes
3
replies
996
views
transcriptomic data for molecular subtyping
molecular-subtyping
updated 19 months ago by
mark.ziemann
★ 2.0k • written 19 months ago by
mavy
▴ 10
1
vote
1
reply
808
views
Aneuploidy analysis from WGS
aneuploidy
cnv
wgs
updated 19 months ago by
mark.ziemann
★ 2.0k • written 19 months ago by
Thierry Waltrich
▴ 10
0
votes
0
replies
414
views
String version 11 directionality
ppi
String
direction
19 months ago by
ysnuye
▴ 20
2
votes
2
replies
766
views
Sample clustering from 10X single cell
clustering
19 months ago by
synat.keam
▴ 120
3
votes
3
replies
6.3k
views
how to install conda bcftools +fill-tags plugin ?
bcftools
updated 19 months ago by
Ram
45k • written 4.1 years ago by
Daniel
▴ 10
0
votes
2
replies
1.3k
views
How to add motifs in cellranger-arc reference?
gtf
scRNAseq
fasta
cellranger
updated 17 months ago by
Ehsan
• 0 • written 19 months ago by
bioinfo
▴ 160
1
vote
1
reply
1.1k
views
Gnomad MAF question
MAF
updated 19 months ago by
Ram
45k • written 19 months ago by
a615ebfb
▴ 60
0
votes
8
replies
1.6k
views
Speeding up WGS analysis
WGS
updated 19 months ago by
GenoMax
154k • written 19 months ago by
Trivas
★ 1.9k
1
vote
0
replies
1.0k
views
Herald:
The Biostar Herald for Tuesday, February 20, 2024
herald
19 months ago by
Biostar
3.6k
2
votes
6
replies
1.9k
views
What is the expected number of common/mutual/shared SNVs between two, three, four... unrelated individuals?
snv
genomics
variation
snp
human
19 months ago by
Joel Wallenius
▴ 220
0
votes
5
replies
1.5k
views
How do I get utr transcript coordinates?
UTR
transcript
19 months ago by
Salvatore
• 0
0
votes
0
replies
477
views
getDifferentialPeaksReplicates.pl Output on Up/Dn regulated in target
HOMER
DESeq2
updated 19 months ago by
Ram
45k • written 19 months ago by
yee
• 0
0
votes
0
replies
548
views
Range for the score values for STRING PPI database
STRING
PPI
updated 19 months ago by
Ram
45k • written 19 months ago by
ysnuye
▴ 20
2
votes
6
replies
1.6k
views
how to get entrez IDs from wormbase gene IDs
wormbase
19 months ago by
leranwangcs
▴ 150
0
votes
3
replies
1.1k
views
pseudobulk differential expression design matrix
pseudobulk
single-cell
scRNA-seq
19 months ago by
nhaus
▴ 420
0
votes
4
replies
1.2k
views
ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq.gz
fastq
single-end
ENA
19 months ago by
Aaliya
• 0
0
votes
0
replies
314
views
How to retrieve information on isolation location from NCBI?
NCBI
isolation-location
updated 19 months ago by
Ram
45k • written 19 months ago by
loy
• 0
0
votes
0
replies
409
views
How to get a UTR_CDS_Intron_Upstream_Downstream.bed file input of swDMR
gtf
swDMR
bed
19 months ago by
jfelix
• 0
5
votes
11
replies
3.1k
views
Locating IBD candidates with just VCF files
Relatedness
Genotypes
IBD
Haplotypes
VCF
7 months ago by
Joel Wallenius
▴ 220
0
votes
4
replies
1.0k
views
Limma - normalizing gene expression data from multiple SRA experiments
edgeR
Limma
RNAseq
SRA
19 months ago by
peter.polacek
• 0
0
votes
1
reply
487
views
Protein - small molecule analysis
Protein
small-molecule
updated 19 months ago by
dthorbur
★ 3.1k • written 19 months ago by
roniozagam94
▴ 10
0
votes
0
replies
357
views
Help needed to prepare consensus including overhangs
alignment
overhangs
merging
sequencing
19 months ago by
Bikal
• 0
2
votes
5
replies
1.5k
views
API way to find "Original submitter" files in SRA?
fastq
SRA
19 months ago by
predeus
★ 2.1k
0
votes
0
replies
384
views
MultiGemini is not doing indel realignment, right?? Gemini does't work with single read?
MultiGemini
19 months ago by
ManuelDB
▴ 110
1
vote
2
replies
828
views
How to visualize unique and overlapping genes in upSet R plot
R
Proteomics
UpsetR
19 months ago by
S'bonelo Glen
• 0
121,946 results • Page
146 of 2439
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Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: conda create PackagesNotFoundError
Answer: Orthofinder Not Mapping to Any Orthogroups
Answer: Orthofinder Not Mapping to Any Orthogroups
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Comment: DNA copy number blacklist for excluding common unreliable regions
by
dthorbur
★ 3.1k
Please include target species you are working on. These availability of these kinds of resources will be quite variable depending on how es…
Comment: Functional prediction for proteins of bacteria.
by
dthorbur
★ 3.1k
Can you be more specific about what kind of changes you are interested in? For example, are the biochemical changes or structural changes p…
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
colindaven
8.0k
The best one I've used for ONT reads so far is badread - https://github.com/rrwick/Badread For illumina I've used and like insilicoseq - h…
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
Mensur Dlakic
★ 30k
You may want to consider one of these packages: - https://www.niehs.nih.gov/research/resources/software/biostatistics/art - https://git…
Answer: conda create PackagesNotFoundError
by
cfos4698
★ 1.2k
You should explicitly name the channels from which the packages are to be installed, as the error suggests (`PackagesNotFoundError: The fol…
Comment: Genome Contamination Check with Blobtools
by
GenoMax
154k
> I generated a genome assembly and wanted to check for contaminant sequences Why do you think you have contaminant sequences in your asse…
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
GenoMax
154k
> if you can recommend me tools You can use `randomreads` from BBMap suite to generate short illumina reads with known mutations. A guid…
Answer: Orthofinder Not Mapping to Any Orthogroups
by
saamhasan55
▴ 30
I managed to solve the issue in the end. Oddly enough I simply switched the alignment method in Orthofinder from blast to mmseqs and it gav…
Comment: LASSO parameter selection: lambda min vs lambda 1se
by
nuorain
▴ 40
Thank you so much for your input!!!!
Answer: LASSO parameter selection: lambda min vs lambda 1se
by
Mensur Dlakic
★ 30k
You are asking us to help you justify something after the fact. You seem to have picked a course of action arbitrarily, though that does no…
Comment: Help understanding this per base sequence content failure fastqc plot
by
Mensur Dlakic
★ 30k
Make this an answer rather than comment?
Comment: Feasibility of detecting PCR-chimeric reads with Machine Learing (ML) for organe
by
andres.firrincieli
3.9k
While there is no specific rule against the use of ChatGPT or similar, this must be clearly stated in the answer
Comment: cellranger mkref fail/error
by
Arup Ghosh
3.4k
As you managed to run each organism separately successfully. Does the combined size of the FASTA files exceed the amount of memory you spec…
Comment: Linear regression vs DESeq2 models for DEG analysis
by
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89k
+1 Your answer should be the top-voted answer in this thread https://www.biostars.org/p/284775/ as it actually addresses conceptual diffe…
Comment: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
It is not clear to me that you can meaningfully correct for 5 different batches with two samples a piece.
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