Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
121,945 results • Page
147 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
764
views
polyA anaysis in cDNA data using FLAMAnalysis
polyT
polyA
nanopore
cdna
19 months ago by
bioinfo_ga
▴ 70
2
votes
8
replies
1.9k
views
TCGA Biospecimens Slides Extraction
tcga
updated 19 months ago by
Zhenyu Zhang
★ 1.3k • written 19 months ago by
jain72744
▴ 10
4
votes
16
replies
2.9k
views
hisat2 location does not exist
hisat2
updated 19 months ago by
Ram
45k • written 19 months ago by
Eric
• 0
0
votes
2
replies
695
views
Subset overlapping regions to find the minimal number of non overlapping regions
overlap
bedtools
intersect
19 months ago by
Geoffrey
• 0
0
votes
1
reply
695
views
Bumpy qq-plot
gemma
emmax
lmm
gwas
qqplot
updated 19 months ago by
dthorbur
★ 3.1k • written 19 months ago by
Luqman
• 0
0
votes
2
replies
2.9k
views
ROSE Algorithm for Ranking Super Enhancers
ChIP-Seq
updated 19 months ago by
Ram
45k • written 5.2 years ago by
mropri
▴ 170
8
votes
7
replies
2.6k
views
6 follow
Forum:
Tower Server configuration for NGS data analysis
NGS
updated 19 months ago by
emma.a
▴ 130 • written 20 months ago by
harasharan
• 0
0
votes
1
reply
746
views
Job:
FT Tenured Faculty Position at Washington University School of Medicine in St. Louis
Neurogenomics
Fulltime
Missouri
Tenured
Faculty
updated 19 months ago by
Ram
45k • written 19 months ago by
Christi
• 0
2
votes
7
replies
1.5k
views
How to turn a column into a character string (to execute filterbyname.sh of the BBTools suite)
BBTools
filterbyname.sh
bash
updated 19 months ago by
Ram
45k • written 19 months ago by
ella
• 0
1
vote
1
reply
2.1k
views
T2T chm13 fasta and annotation files
NGS
T2T-chm13
reference-genome
updated 19 months ago by
Darked89
4.7k • written 19 months ago by
sarahmanderni
▴ 130
1
vote
2
replies
895
views
Phylogeny from mixed GBS and WGS
VCF
Phylogeny
GBS
WGS
tree
19 months ago by
maxrwjones
▴ 60
2
votes
2
replies
891
views
How can I create a sample characteristic/mutation plot in R?
R
heatmap
publication
mutation
updated 19 months ago by
Ram
45k • written 19 months ago by
db4761
• 0
1
vote
1
reply
615
views
Extract single chromosome reads from Bam file
bam
reads
extract
samtools
updated 19 months ago by
ATpoint
89k • written 19 months ago by
marco.barr
▴ 180
4
votes
5
replies
1.0k
views
Filter out miRNA from ncRNA dataset
bowtie
bowtie2
miRNA
filtering
ncRNA
updated 19 months ago by
ATpoint
89k • written 19 months ago by
binaryCode
▴ 10
1
vote
1
reply
1.1k
views
How to estimate -g genome-size for Flye for de novo genome or for --meta mode when using Metaflye?
assembly
fasta
genomics
nanopore
pacbio
updated 19 months ago by
akshay
▴ 10 • written 22 months ago by
O.rka
▴ 750
0
votes
4
replies
1.2k
views
Salmon index issue
Salmon
RNAseq
updated 19 months ago by
Istvan Albert
103k • written 19 months ago by
Andrea
▴ 10
3
votes
3
replies
1.3k
views
line 164: 15342 Segmentation fault (core dumped) ${cmd} ${options} - 0<&0
vcf2bed
megarow
bedops
updated 19 months ago by
BioinfGuru
★ 2.1k • written 19 months ago by
Niharika
• 0
0
votes
2
replies
692
views
BLAST Database error: No alias or index file found for protein database
protein
BLAST
19 months ago by
hrza_mar
• 0
3
votes
4
replies
1.1k
views
How to find what is the most significantly modulated gene in GEO2R analysis?
gene
GEO
GEO2R
19 months ago by
guntul
▴ 40
1
vote
2
replies
1.2k
views
Separating bam file based on directionality / samtools view -F/-f option(s) appears to not do anything
ubuntu
linux
samtools
updated 19 months ago by
Ram
45k • written 19 months ago by
Matthew
• 0
0
votes
4
replies
1.5k
views
how to extract variants from the vcf.gz files linked below?
vcftools
bcf
vcf
bcftools
19 months ago by
Mahad
• 0
0
votes
0
replies
432
views
Circle plot multi_fasta circular sequences
circle-plot
fasta
updated 19 months ago by
Ram
45k • written 19 months ago by
marco.barr
▴ 180
0
votes
0
replies
457
views
WebAUGUSTUS training support
WebAUGUSTUS
AUGUSTUS
19 months ago by
Kinoppy
• 0
0
votes
0
replies
660
views
Tool:
Microbiome Analysis: Comprehensive 16S Meta-barcoding Analysis in R with Phyloseq - On Sale Now!
R
microbiome
16S
phyloseq
analysis
19 months ago by
camillatafuro
• 0
5
votes
4
replies
1.1k
views
Differential expression at pathway level
GSVA
updated 19 months ago by
AquaDeath
▴ 80 • written 19 months ago by
Chris
▴ 360
1
vote
5
replies
1.3k
views
How to calculate insert size and Stdev of insert file for Configure file of MaSuRCA assembly ?
MaSuRCA
insert-size
assembly
updated 19 months ago by
Ram
45k • written 19 months ago by
Sony
▴ 20
0
votes
0
replies
430
views
News:
Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference
Population-Genomics
Demographic-Models
updated 19 months ago by
Ram
45k • written 19 months ago by
Physalia-courses
★ 2.6k
1
vote
2
replies
1.4k
views
Biopython reference SASA values for 20 amino acids?
pdb
structure
biopython
sasa
19 months ago by
Nick
▴ 40
2
votes
1
reply
982
views
How to assess performance of a GWAS analysis pipeline
benchmark
hail
GWAS
performance
updated 19 months ago by
Ram
45k • written 19 months ago by
lsy9
▴ 20
0
votes
2
replies
687
views
Traveler with Infernal mapping failed
r2dt
updated 16 months ago by
anton.i.petrov
• 0 • written 19 months ago by
Larissa
• 0
1
vote
0
replies
709
views
Forum:
list of bioinformatics tools in cancer genomics
mutations
CNA
cancer
genomics
LOH
updated 19 months ago by
Pierre Lindenbaum
166k • written 19 months ago by
Bogdan
★ 1.4k
22
votes
10
replies
11k
views
9 follow
fastq compression tools of choice
fastq
compression
updated 19 months ago by
Xi
• 0 • written 10.1 years ago by
Richard
▴ 600
3
votes
2
replies
945
views
model.matrix in EdgeR to account for batch effects with multiple samples
EdgeR
design
batch
19 months ago by
Ann
▴ 40
0
votes
1
reply
545
views
UMI and index sequence in RNA-seq data
RNA-seq
updated 19 months ago by
Chris Dean
▴ 420 • written 19 months ago by
aminijavad4
▴ 10
0
votes
0
replies
461
views
Extracting mutation and Mutation spectrum
Mutation-plot
Sars-cov-2
updated 19 months ago by
Ram
45k • written 19 months ago by
realtreeecat
• 0
0
votes
0
replies
422
views
Prediction of the active site of a protein complex
GHECOM
active-site
updated 19 months ago by
Ram
45k • written 19 months ago by
Curious
▴ 10
0
votes
1
reply
557
views
Phylogenetic analysis of Nucleic Acid Sequence
phylogenetic-analysis
updated 19 months ago by
Ram
45k • written 19 months ago by
Winnifred
• 0
0
votes
1
reply
750
views
Database of gene names and synonyms across species
database
genes
updated 19 months ago by
noodle
▴ 650 • written 19 months ago by
dolphin-sea
• 0
0
votes
3
replies
995
views
GWAS drug-genes
drug
GWAS
genomics
updated 19 months ago by
LauferVA
4.8k • written 19 months ago by
aj123
▴ 130
0
votes
1
reply
787
views
extracting multiple sequence alignment from bigMaf
bigMaf
updated 19 months ago by
gubrins
▴ 350 • written 3.4 years ago by
Zhang
• 0
0
votes
2
replies
1.8k
views
I keep getting error ( code 3) while doing fasterq-dump
fasterq-dump
sra-toolkit
fastq-dump
updated 19 months ago by
Pierre Lindenbaum
166k • written 19 months ago by
naveedhasan2000
▴ 10
4
votes
7
replies
1.7k
views
Bioconductor packages
BiocManager
Bioconductor
updated 19 months ago by
Michael
56k • written 19 months ago by
mrashad
▴ 80
0
votes
0
replies
536
views
Enzyme in Pathview
r
metabolomic
kegg
pathview
updated 19 months ago by
Pierre Lindenbaum
166k • written 19 months ago by
CECEL
• 0
0
votes
0
replies
558
views
ROH with genome in scaffolds
ROH
scaffolds
BUSCO
whole-genome
19 months ago by
Kimbeer
• 0
0
votes
2
replies
869
views
Converting SNP data table into .traw format or qtl (R) format
R
SNP
traw
qtl
19 months ago by
iaagosch
• 0
0
votes
0
replies
431
views
Looking for free access medical related data bases
literature-search
publication
Data-mining
updated 19 months ago by
Ram
45k • written 19 months ago by
damejiab
• 0
2
votes
9
replies
3.7k
views
keep getting error with psiblast
psiblast
python
blast
updated 19 months ago by
fznajar
• 0 • written 4.1 years ago by
Mo
▴ 920
1
vote
2
replies
913
views
Normalization of Bigwig file
ATAC
BigWig
updated 19 months ago by
Ram
45k • written 19 months ago by
daffodil
▴ 10
1
vote
2
replies
871
views
genomecov -d -pc -ibam showing no coverage for every position
transcriptomics
genomecov
bedtools
rna-seq
updated 19 months ago by
ATpoint
89k • written 19 months ago by
Gabrielle
• 0
0
votes
1
reply
838
views
LOFTEE flag on GnomAD - END_TRUNC
loftee
gnomad
updated 19 months ago by
Pierre Lindenbaum
166k • written 19 months ago by
amy__
▴ 250
121,945 results • Page
147 of 2439
Recent Votes
Answer: conda create PackagesNotFoundError
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: conda create PackagesNotFoundError
Answer: Orthofinder Not Mapping to Any Orthogroups
Recent Locations •
All
Singapore,
2 minutes ago
Germany,
5 minutes ago
United States,
6 minutes ago
Spain,
10 minutes ago
Brazil,
10 minutes ago
United States,
15 minutes ago
Norway,
19 minutes ago
Recent Awards •
All
Popular Question
to
curious
▴ 890
Teacher
to
Christopher Walker
▴ 80
Popular Question
to
Pranava
▴ 10
Popular Question
to
jonstug
• 0
Popular Question
to
yura.grabovska
▴ 820
Commentator
to
ATpoint
89k
Popular Question
to
saamhasan55
▴ 30
Recent Replies
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
GenoMax
154k
Do you know if ART is able to generate known mutations.
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
GenoMax
154k
> which will also give me list of the variants Do either of these packages satisfy the requirement of generating known mutations?
Comment: DNA copy number blacklist for excluding common unreliable regions
by
dthorbur
★ 3.1k
Please include target species you are working on. These availability of these kinds of resources will be quite variable depending on how es…
Comment: Functional prediction for proteins of bacteria.
by
dthorbur
★ 3.1k
Can you be more specific about what kind of changes you are interested in? For example, are the biochemical changes or structural changes p…
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
colindaven
8.0k
The best one I've used for ONT reads so far is badread - https://github.com/rrwick/Badread For illumina I've used and like insilicoseq - h…
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
Mensur Dlakic
★ 30k
You may want to consider one of these packages: - https://www.niehs.nih.gov/research/resources/software/biostatistics/art - https://git…
Answer: conda create PackagesNotFoundError
by
cfos4698
★ 1.2k
You should explicitly name the channels from which the packages are to be installed, as the error suggests (`PackagesNotFoundError: The fol…
Comment: Genome Contamination Check with Blobtools
by
GenoMax
154k
> I generated a genome assembly and wanted to check for contaminant sequences Why do you think you have contaminant sequences in your asse…
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
GenoMax
154k
> if you can recommend me tools You can use `randomreads` from BBMap suite to generate short illumina reads with known mutations. A guid…
Answer: Orthofinder Not Mapping to Any Orthogroups
by
saamhasan55
▴ 30
I managed to solve the issue in the end. Oddly enough I simply switched the alignment method in Orthofinder from blast to mmseqs and it gav…
Comment: LASSO parameter selection: lambda min vs lambda 1se
by
nuorain
▴ 40
Thank you so much for your input!!!!
Answer: LASSO parameter selection: lambda min vs lambda 1se
by
Mensur Dlakic
★ 30k
You are asking us to help you justify something after the fact. You seem to have picked a course of action arbitrarily, though that does no…
Comment: Help understanding this per base sequence content failure fastqc plot
by
Mensur Dlakic
★ 30k
Make this an answer rather than comment?
Comment: cellranger mkref fail/error
by
Arup Ghosh
3.4k
As you managed to run each organism separately successfully. Does the combined size of the FASTA files exceed the amount of memory you spec…
Comment: Linear regression vs DESeq2 models for DEG analysis
by
ATpoint
89k
+1 Your answer should be the top-voted answer in this thread https://www.biostars.org/p/284775/ as it actually addresses conceptual diffe…
Traffic: 3930 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6