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121,951 results • Page
151 of 2440
Sort: Rank
Rank
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Votes
Replies
2
votes
2
replies
1.3k
views
UMI workflow resulting in bams with empty reads
umi
19 months ago by
ww22runner
▴ 60
4
votes
8
replies
1.9k
views
Moderate Mapping percentage
trimmomatic
NGS
RNA-Seq
19 months ago by
Researcher
▴ 30
0
votes
1
reply
561
views
cripsr type and bacterial taxonomic
metagenomics
updated 19 months ago by
dthorbur
★ 3.1k • written 19 months ago by
Petchimuthu
• 0
0
votes
0
replies
352
views
Testing ghost species using f3 statistics
admixtools
f3
updated 19 months ago by
Ram
45k • written 19 months ago by
ki-woong.nam
• 0
1
vote
4
replies
2.5k
views
Different relatedness estimates by PLINK and VCFTOOLS despite same method
kinship
vcftools
PLINK
relatedness
19 months ago by
8armed
▴ 20
3
votes
6
replies
2.3k
views
Geo2R troubleshooting
geo2r
19 months ago by
Sanjukta
• 0
0
votes
0
replies
438
views
WGCNA | plotDendroAndColors ERROR
WGCNA
plotDendroAndColors
19 months ago by
Priya
• 0
0
votes
1
reply
601
views
CellPlex CMO highbackground
scRNA-seq
CellPlex
CMO
updated 19 months ago by
bk11
★ 3.1k • written 19 months ago by
TheCatalyst
• 0
2
votes
7
replies
1.5k
views
Maker: Combining Annotations for Large Genomes
Maker
Genome
annotation
19 months ago by
Kinoppy
• 0
0
votes
1
reply
802
views
Job:
How to calculate hub genes in Cytoscape from a WGCNA output?
Cytoscape
WGCNA
network-analysis
updated 19 months ago by
Ram
45k • written 19 months ago by
pavelasquezv
▴ 50
2
votes
1
reply
1.7k
views
snippy error
snippy
updated 19 months ago by
cfos4698
★ 1.2k • written 20 months ago by
blur
▴ 280
2
votes
2
replies
689
views
Protein model refinement
protein
refinement
19 months ago by
Curious
▴ 10
2
votes
3
replies
973
views
How should I analyze differences between phyletic patterns?
phylogeny
thermophiles
proteoms
phyletic-patterns
updated 19 months ago by
GenoMax
154k • written 20 months ago by
Igor
• 0
3
votes
7
replies
1.5k
views
wANNOVAR memory error
VCF
Annovar
updated 19 months ago by
vinayjrao
▴ 260 • written 20 months ago by
colourful_frog
• 0
6
votes
9
replies
21k
views
HISAT2 software installation
RNA-Seq
updated 20 months ago by
GenoMax
154k • written 8.1 years ago by
saj98
▴ 140
8
votes
7
replies
1.7k
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 19 months ago by
Ram
45k • written 20 months ago by
synat.keam
▴ 120
0
votes
5
replies
1.5k
views
Extract bfile from .bgen using a given .bim to handle duplicated snps
bim
plink
bgen
updated 19 months ago by
chrchang523
11k • written 20 months ago by
yang1641
• 0
2
votes
7
replies
3.0k
views
6 follow
make a heat map with python
Heatmap
python
updated 20 months ago by
Wayne
★ 2.1k • written 20 months ago by
brunofelicianodeomena
• 0
1
vote
1
reply
550
views
Retrieving gene expression from tabula muris in R
muris
tabula
updated 20 months ago by
jv
★ 1.9k • written 20 months ago by
adri.vife
• 0
1
vote
2
replies
971
views
TCR target prediction
TCR
genomics
sequencing
seurat
10x
repertoire
scRNA
updated 20 months ago by
Ram
45k • written 3.4 years ago by
Ahmed
▴ 10
1
vote
2
replies
1.1k
views
How to continue TCR-seq downstream analysis by seurat?
Cellranger
VDJ
TCR-seq
Seurat
updated 20 months ago by
tim
• 0 • written 20 months ago by
Lianfu
▴ 10
2
votes
5
replies
4.9k
views
Any tools for predicting binding affinity between TCR and epitode?
prediction
TCR
cancer
updated 20 months ago by
tim
• 0 • written 7.3 years ago by
CY
▴ 750
0
votes
0
replies
900
views
ANCOM-BC2 (microbiome differential analysis) questions
differential-analysis
updated 20 months ago by
Ram
45k • written 20 months ago by
Ruben
• 0
1
vote
1
reply
1.6k
views
TCR sequence to its targets
TCR-identity
updated 20 months ago by
Ram
45k • written 7.4 years ago by
colonppg
▴ 120
4
votes
7
replies
1.6k
views
scRNA-seq analysis
scRNA-seq
updated 20 months ago by
jared.andrews07
★ 19k • written 20 months ago by
kayah
▴ 20
0
votes
1
reply
553
views
FastaAlternateReferenceMaker merges overlapping regions
FastaAlternateReferenceMaker
updated 19 months ago by
Ram
45k • written 20 months ago by
ManuelDB
▴ 110
1
vote
5
replies
1.6k
views
merging VCF files using bcftools - everyone becomes related
VCF
PLINK
bcftools
19 months ago by
MaYo
• 0
0
votes
4
replies
1.3k
views
Simulation of gene level methylation data
simulation
methylation
18 months ago by
Mamatha Y S
• 0
2
votes
2
replies
1.1k
views
CytoScape parameters for k-means clustering
cytoscape
clustermaker
clustering
k-means
20 months ago by
Phenylananin
▴ 20
3
votes
2
replies
1.6k
views
scRNA-seq downstream analysis on raw vs batch corrected counts
scRNA-seq
batch-correction
19 months ago by
codezero
• 0
0
votes
2
replies
2.0k
views
Meta data information about Bacteria. Attempting to get a list (csv file preferably) of the gram-status, morphology etc of all bacterial species.
microbiome
R
updated 20 months ago by
Ram
45k • written 4.1 years ago by
jacklukemcmurray
• 0
1
vote
1
reply
558
views
Markduplicated picard
picard
updated 20 months ago by
GenoMax
154k • written 20 months ago by
daffodil
▴ 10
0
votes
2
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ggbio
gviz
hg19
updated 20 months ago by
Ram
45k • written 8.6 years ago by
maden.sean
▴ 20
6
votes
5
replies
2.5k
views
difference betwween hail and plink
gwas
plink
hail
19 months ago by
kkk
▴ 20
0
votes
1
reply
643
views
design primers
design
primers
uniprot
updated 20 months ago by
GenoMax
154k • written 20 months ago by
brunofelicianodeomena
• 0
0
votes
1
reply
498
views
domains
ncbi
domains
primers
updated 20 months ago by
GenoMax
154k • written 20 months ago by
brunofelicianodeomena
• 0
38
votes
26
replies
22k
views
16 follow
GO analysis: DAVID vs GREAT vs GOrilla
RNA-Seq
ChIP-Seq
GO
gene ontology
written 9.6 years ago by
biostart
▴ 370
0
votes
0
replies
867
views
Seurat Figure legend
single
cell
20 months ago by
synat.keam
▴ 120
2
votes
1
reply
5.6k
views
Job:
Staff Scientists Positions: System Architect And Bioinformatics Engineer, Massachusetts General Hospital, Boston,
sysadmin
computational-biologist
written 12.4 years ago by
U
▴ 70
78
votes
15
replies
59k
views
10 follow
Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
risk
minor
major
reference
alleles
written 7.4 years ago by
m98
▴ 440
15
votes
6
replies
6.3k
views
6 follow
converting taxID to taxonomy
NCBI
TAXONOMY
TAXID
terminal
written 5.6 years ago by
Frieda
▴ 60
36
votes
13
replies
8.8k
views
8 follow
How Do You Log Details Of Data Processing/ Pipelines / In Silico Analyses Performed
data
galaxy
written 14.4 years ago by
Pi
▴ 520
1
vote
1
reply
1.8k
views
Minimum reads per sample
multiplexing
rna-seq
updated 20 months ago by
GenoMax
154k • written 20 months ago by
rico07
• 0
4
votes
2
replies
1.3k
views
Forum:
bulk seq vs. sc-seq
scATAC-seq
ATAC-seq
scRNAseq
RNAseq
updated 20 months ago by
dsull
★ 7.7k • written 20 months ago by
SebKittelmann
▴ 10
8
votes
6
replies
3.6k
views
Forum:
Demonstrating Exponential Growth In Pre-School
education
written 11.6 years ago by
Asaf
10k
1
vote
1
reply
623
views
SRA ToolKit: can't verify binaries
SRA
ToolKit
fastq-dump
updated 20 months ago by
GenoMax
154k • written 20 months ago by
Izzy
• 0
0
votes
1
reply
810
views
ClinSV issue
clinsv
CNVcalling
docker
updated 20 months ago by
Charles R.
▴ 10 • written 3.5 years ago by
Jordi
▴ 60
0
votes
1
reply
714
views
Design matrix after RUVg correction
limma
ruvseq
differential-expression
updated 17 months ago by
Ram
45k • written 20 months ago by
Shaimaa Gamal
▴ 10
0
votes
1
reply
579
views
ROC Curve
curve
roc
python
r
20 months ago by
shabbas12
▴ 10
0
votes
4
replies
1.9k
views
How to reference input variable in output section of rule of Snakemake rule
python
snakemake
updated 20 months ago by
Ram
45k • written 20 months ago by
Dhatri Badri
• 0
121,951 results • Page
151 of 2440
Recent Votes
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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Answer: conda create PackagesNotFoundError
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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Just adding some detail here that may help draw some connections with other posts, I did a bunch of sleuthing with selectively trimming dif…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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It's a little unclear what you mean by "I was able to use wgsim, but when I tried aligning the paired-reads, it's not aligning together."
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89k
Just to be sure: You ssh into a remote server, correct? Die you setup the conda environment on your local machine or the remote? Must be th…
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Sorry to those of you having the same issue. I haven't been on here in quite some time! I've documented my fix on pySCENIC's github page be…
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I think this is still not quite right because I think your tags need to be tab-separated in the output to really be parseable, and here the…
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`vg giraffe` does not use the exact same MAPQ algorithm as bwa-mem. However, its mapping qualities are still meant to be Phred-scale probab…
Comment: using packages with conda
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raquel
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Yes, I'm using SSH session
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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★ 30k
I think only a fraction of sequencing errors can be specified. If a mix of a reference and a mutated genome is included, setting sequencing…
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89k
Cannot reproduce. Is this run via some sort of server/HPC/scheduler/something?
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89k
Seriously, an ordinary limma-voom analysis between two groups is as little of 5 lines of code. Please read the limma user guide which cover…
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154k
Do you know if ART is able to generate known mutations.
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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154k
> which will also give me list of the variants Do either of these packages satisfy the requirement of generating known mutations?
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Please include target species you are working on. These availability of these kinds of resources will be quite variable depending on how es…
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Can you be more specific about what kind of changes you are interested in? For example, are the biochemical changes or structural changes p…
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8.0k
The best one I've used for ONT reads so far is badread - https://github.com/rrwick/Badread For illumina I've used and like insilicoseq - h…
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