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121,951 results • Page
152 of 2440
Sort: Rank
Rank
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Votes
Replies
0
votes
2
replies
916
views
Feature.extract(SeqRecord) misses features
Biopython
updated 20 months ago by
Ram
45k • written 20 months ago by
niklas
▴ 30
0
votes
2
replies
630
views
different numbers of genes for WGCNA and Differential expression
wgcna
edgeR
differential-expression
updated 11 months ago by
allingt
▴ 40 • written 20 months ago by
Gail
• 0
2
votes
2
replies
944
views
Need a spatial transcriptomics cancer data
NGS
scRNA-Seq
Single-Cell
updated 20 months ago by
jv
★ 1.9k • written 20 months ago by
ahmad mousavi
▴ 800
0
votes
2
replies
661
views
Filtering the SNPs
GWAS
SNP
GBS
updated 20 months ago by
dthorbur
★ 3.1k • written 20 months ago by
umeshtanwar2
▴ 30
7
votes
3
replies
1.0k
views
Should you remove PCR duplicates for kmer counting?
kmer
dedup
duplicates
updated 20 months ago by
Darked89
4.7k • written 20 months ago by
ebaldwin
▴ 40
0
votes
0
replies
406
views
News:
Online course: Computation Tumor Evolution
R
Cancer-Genomics
Tumor-Evolution
Genomics
updated 20 months ago by
Ram
45k • written 20 months ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
389
views
Interpreting HOMER getDifferentialPeaks.pl output columns
ATACseq
20 months ago by
Ronin
▴ 10
1
vote
3
replies
832
views
BLAST
DNA
blast
sequencing
updated 20 months ago by
GenoMax
154k • written 20 months ago by
m90
▴ 30
0
votes
2
replies
1.1k
views
How to choose --hwe threshold?
plink
hardy-weinberg
quality-control
qc
20 months ago by
_quantum_girl_
▴ 60
1
vote
3
replies
1.1k
views
Why statistic test should I use?
Statistics
updated 20 months ago by
dariober
15k • written 20 months ago by
Matheus
• 0
12
votes
7
replies
3.2k
views
Shrink logFC values after edgeR
logFC
edgeR
updated 18 months ago by
Gordon Smyth
★ 8.3k • written 20 months ago by
arvind.1
▴ 10
1
vote
4
replies
1.1k
views
Batch effect
single-cell
Seuratv5
Seurat
20 months ago by
f-bee
• 0
0
votes
7
replies
1.5k
views
1000 Genome: Cause of duplicate variants with different genotypes
CrossMap
1000Genome
1000G
updated 20 months ago by
Giulio Genovese
▴ 630 • written 20 months ago by
JourneyToAbyss
▴ 250
0
votes
7
replies
2.6k
views
cellranger count error
single-cell
cellranger
updated 20 months ago by
GenoMax
154k • written 20 months ago by
Elinor
• 0
0
votes
0
replies
360
views
difference in class code between cuffcompare and cuffmerge
cuffmerge
lncRNA
cufflinks
cuffcompare
20 months ago by
ZZOYEA
▴ 20
3
votes
2
replies
991
views
How to exclude reads from a fastq file, using a list of read names?
fastq
grep
filter
20 months ago by
Tash
▴ 20
0
votes
1
reply
897
views
"N/A" in fgsea result
gsea
fgsea
updated 20 months ago by
Dave Carlson
★ 2.2k • written 20 months ago by
puffpumpkin
• 0
0
votes
0
replies
596
views
How is the "fold change over control" bigwig file generated from ATAC-seq data?
ATAC-seq
ENCODE
control
20 months ago by
Ruoyun
• 0
2
votes
5
replies
1.7k
views
Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
deseq2
biomarkers
16S
20 months ago by
Rachel
• 0
2
votes
6
replies
1.8k
views
Differential expression analysis with very high duplication rate
RNA-seq
DE
Picard
PCR
duplicates
19 months ago by
JMB
▴ 20
4
votes
3
replies
1.6k
views
FASTQ-DUMP error while downloading HGDP datadset
hgdp
fastqdump
20 months ago by
Qboy
▴ 10
0
votes
0
replies
490
views
Practical Haplotype Graph Imputation
practical-haplotype-graph
PHG
20 months ago by
micah_k
▴ 10
1
vote
4
replies
5.0k
views
GFF3 to 12-column BED
GFF3
BED
updated 20 months ago by
Ram
45k • written 9.0 years ago by
New2R
▴ 60
13
votes
10
replies
19k
views
6 follow
conversion of GFF3 formate to BED format
RNA-Seq
updated 20 months ago by
Ram
45k • written 7.3 years ago by
blooming.daisy333
▴ 110
1
vote
0
replies
1.0k
views
Tool:
gxf2bed: A high-performance GTF/GFF-to-BED converter written in Rust
convert
gff
gtf
bed
20 months ago by
alejandrogzi
▴ 150
1
vote
4
replies
1.2k
views
Strategies with annotated VCF files to filter very big VCF from WGS
WGS
VCF
whole-genome-sequencing
updated 20 months ago by
barslmn
★ 2.4k • written 20 months ago by
randyOrlando
▴ 20
1
vote
3
replies
1.7k
views
GTEx TPMs Vs normalized data
gtex
RNA-seq
normalization
gene-expression
updated 20 months ago by
jv
★ 1.9k • written 20 months ago by
DS
▴ 10
8
votes
11
replies
5.6k
views
Nextflow - I/O and index issues
bwa-mem2
groovy
dsl
nextflow
trim-galore
20 months ago by
bhumm
▴ 200
0
votes
6
replies
1.2k
views
Find Large-scale CNVs in whole exome sequencing
WES
scRNA-seq
CNV
20 months ago by
fifty_fifty
▴ 90
3
votes
7
replies
1.6k
views
Did the stability of the transcriptome be affected by factors such as pathological conditions, diet?
transcriptome
updated 19 months ago by
Yogi
▴ 70 • written 20 months ago by
GrantS
▴ 20
0
votes
0
replies
474
views
News:
Course live online Intro Bayesian Analyses, March 4-8, 2024
R
python
bayesian
20 months ago by
Sole
• 0
2
votes
2
replies
794
views
Extracting mutation information from a VCF file.
Biopython
VCF
phylogenetic
UShER
updated 20 months ago by
Pierre Lindenbaum
166k • written 20 months ago by
realtreeecat
• 0
0
votes
1
reply
467
views
De-novo transcriptome
De-novo
updated 20 months ago by
Ram
45k • written 20 months ago by
bala
• 0
8
votes
7
replies
1.8k
views
Three fastq files
fastq
SRA
cellranger
updated 20 months ago by
swbarnes2
15k • written 20 months ago by
charms.charms
• 0
3
votes
4
replies
1.2k
views
How to fix DESeq2 Error in checkFullRank(modelMatrix)
deseq2
updated 20 months ago by
i.sudbery
22k • written 20 months ago by
marco.barr
▴ 180
2
votes
3
replies
971
views
Can I run a blast for each contig in my contigs file?
blast
updated 20 months ago by
GenoMax
154k • written 20 months ago by
roberto.bonnellya
• 0
1
vote
1
reply
910
views
How to make separate plots in Monocle3 using combined control and treatment samples
monocle3
plot_cells
updated 20 months ago by
Ram
45k • written 20 months ago by
alwayshope
▴ 40
0
votes
0
replies
321
views
Set pentanucleotide context in dndscv
dndscv
20 months ago by
vswamy
• 0
2
votes
6
replies
1.7k
views
GO and KEGG
GO
bulk-RNA-seq
Rstudio
KEGG
updated 19 months ago by
jv
★ 1.9k • written 20 months ago by
matteo.levorato
• 0
1
vote
2
replies
650
views
Internal controls/ Reference Samples for Nanopore
nanopore
updated 20 months ago by
dthorbur
★ 3.1k • written 20 months ago by
pixie@bioinfo
★ 1.5k
2
votes
3
replies
1.3k
views
Merge seurat list
merge
updated 20 months ago by
GenoMax
154k • written 20 months ago by
Long
▴ 10
1
vote
1
reply
740
views
What could be a better K-mer for my WGS assembly task using ABySS, with my current hardware profile.
ABySS
genome
k-mer
assembly
updated 20 months ago by
shelkmike
★ 1.8k • written 20 months ago by
Vijith
▴ 100
0
votes
3
replies
887
views
How to show that correlation from one method is more significant than other method?
p-value
model-performance
significance
correlation
updated 20 months ago by
Shred
★ 1.6k • written 20 months ago by
rheab1230
▴ 150
1
vote
2
replies
947
views
Pymol movie - ligand and receptor binding.
Pymol
protein
structure
PDB
19 months ago by
Hansen_869
▴ 80
0
votes
1
reply
1.0k
views
CNVKit .cnr to cns conversion algorithm
cnvkit
cnv
updated 20 months ago by
francisco
• 0 • written 2.5 years ago by
Jade
• 0
0
votes
4
replies
2.0k
views
How can I call somatic CNV in tumor samples with no normal samples?
R
cnvkit
copy-number
ascat
updated 20 months ago by
francisco
• 0 • written 21 months ago by
Saurabh
• 0
6
votes
4
replies
2.3k
views
Creating a csv in a specific format from FASTQ file names
nf-core
bash
updated 20 months ago by
Mahmoud.Abdallah
• 0 • written 20 months ago by
jamie3355
• 0
5
votes
7
replies
11k
views
Remove adaptaters from ONT reads : An alternative to Porechop ?
minion
promethion
porechop
nanopore
ONT
oxford
updated 20 months ago by
Michael
56k • written 6.9 years ago by
Rox
★ 1.5k
3
votes
3
replies
2.2k
views
How I can get percent identity matrix from clustalw or clustalo?
clustalo
clustalw
msa
multiplesequencealignment
pairwise
20 months ago by
Jiun
• 0
3
votes
2
replies
1.2k
views
What is the best GWAS tool to use for a very large cohort data (UK Biobank data)?
BOLT-LMM
GWAS
regenie
SAIGE
hail
updated 20 months ago by
GenoMax
154k • written 20 months ago by
lsy9
▴ 20
121,951 results • Page
152 of 2440
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Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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Just adding some detail here that may help draw some connections with other posts, I did a bunch of sleuthing with selectively trimming dif…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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It's a little unclear what you mean by "I was able to use wgsim, but when I tried aligning the paired-reads, it's not aligning together."
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89k
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Sorry to those of you having the same issue. I haven't been on here in quite some time! I've documented my fix on pySCENIC's github page be…
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89k
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89k
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154k
Do you know if ART is able to generate known mutations.
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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154k
> which will also give me list of the variants Do either of these packages satisfy the requirement of generating known mutations?
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Please include target species you are working on. These availability of these kinds of resources will be quite variable depending on how es…
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Can you be more specific about what kind of changes you are interested in? For example, are the biochemical changes or structural changes p…
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8.0k
The best one I've used for ONT reads so far is badread - https://github.com/rrwick/Badread For illumina I've used and like insilicoseq - h…
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