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121,952 results • Page
153 of 2440
Sort: Rank
Rank
Views
Votes
Replies
3
votes
2
replies
1.2k
views
What is the best GWAS tool to use for a very large cohort data (UK Biobank data)?
BOLT-LMM
GWAS
regenie
SAIGE
hail
updated 20 months ago by
GenoMax
154k • written 20 months ago by
lsy9
▴ 20
3
votes
7
replies
1.7k
views
Split large deletion D in CIGAR string and filtering reads
CIGAR
reads
updated 20 months ago by
Pierre Lindenbaum
166k • written 20 months ago by
marco.barr
▴ 180
1
vote
2
replies
1.0k
views
How to do DESeq2 on Kallisto Data
Unfolded
Kallisto
DESeq2
Reponse
Protein
updated 20 months ago by
dsull
★ 7.7k • written 20 months ago by
Aaliya
• 0
2
votes
1
reply
723
views
Conversion Issue with bcl2fastq2
bcl2fastq2
Novaseq6000
updated 20 months ago by
Ram
45k • written 20 months ago by
Christopher
▴ 10
0
votes
3
replies
964
views
Biologic Images processing: Immunofluorescences
microscope
image
immunofluorescence
developmental
processing
updated 20 months ago by
hq.huang11.6
▴ 10 • written 3.3 years ago by
Francesco
• 0
0
votes
1
reply
745
views
Extracting observations from one dataframe to populate another
R
tibble
stringr
dplyr
tidyr
updated 20 months ago by
Ram
45k • written 20 months ago by
Rachel
• 0
1
vote
5
replies
1.6k
views
Mapping vs Alignment mode in Salmon
salmon
alignment
mapping
RNA-Seq
20 months ago by
Sowmya
• 0
1
vote
3
replies
1.3k
views
How to exclude sex-dependent genes from RNA-Seq?
RNA-seq
DESeq2
updated 20 months ago by
ATpoint
89k • written 20 months ago by
bxxxmxxxx
▴ 10
1
vote
1
reply
700
views
fold change value
proteomics
gene-expression
updated 20 months ago by
Ram
45k • written 20 months ago by
Giovana
• 0
3
votes
9
replies
1.8k
views
Tool:
Generate unit-tested, ready-to-run pipelines using natural language prompting
NGS
pipeline
genomics
cloud
AI
15 months ago by
Kevin
▴ 100
7
votes
12
replies
3.4k
views
Integrated genes from bulk RNA seq and ATAC seq
ATAC-seq
bulk-RNA
updated 20 months ago by
Ram
45k • written 2.4 years ago by
Chris
▴ 360
0
votes
4
replies
1.3k
views
How to find SNP locations in assemblies other than hg38
hg19
SNP
dbsnp
updated 20 months ago by
Ram
45k • written 20 months ago by
Bosberg
▴ 50
4
votes
11
replies
2.1k
views
Remove X in row name with only number
GSVA
updated 20 months ago by
Ram
45k • written 20 months ago by
Chris
▴ 360
0
votes
5
replies
1.1k
views
HPRC sample information (human Pangenome)
ONT
Pangenome
Nanopore
HPRC
updated 20 months ago by
GenoMax
154k • written 20 months ago by
turcoa1
• 0
2
votes
2
replies
1.1k
views
PyMol vs DS visualizer for publication images
DSvisualizer
PyMol
updated 20 months ago by
Wayne
★ 2.1k • written 20 months ago by
Stroodes
▴ 10
1
vote
1
reply
492
views
single cell annotation of human data using mouse data
single-cell
singleR
Seurat
updated 20 months ago by
Ram
45k • written 20 months ago by
shersky
• 0
1
vote
2
replies
815
views
Tumour purity and ploidy estimation
Copy-number
Whole-exome-sequencing
17 months ago by
bp22
▴ 80
3
votes
4
replies
1.1k
views
What can cause broken read-pairs (chimeric read-pairs) in a sequencing run?
QC
20 months ago by
William
★ 5.4k
0
votes
0
replies
499
views
Interpret mean variance trend plot
R
voom
20 months ago by
anasjamshed
▴ 140
0
votes
0
replies
453
views
GSEA or PEA with pearson correlations instead of log2foldchanges
GSEA
Enrichment-analysis
PEA
Cellrank
updated 20 months ago by
Ram
45k • written 20 months ago by
Tolga
▴ 30
1
vote
4
replies
1.2k
views
average of one column for each category of another column
R
updated 20 months ago by
Ram
45k • written 20 months ago by
sata72
• 0
14
votes
3
replies
3.7k
views
is oxford nanopore technology data paired or single end sequencing?
oxford-nanopore
DNA
RNA
updated 20 months ago by
Ram
45k • written 20 months ago by
Alewa
▴ 190
2
votes
1
reply
831
views
RNA-Seq expression analysis
RNA-seq
nextflow
heatmap
gene-expression
updated 20 months ago by
dthorbur
★ 3.1k • written 20 months ago by
Ric
▴ 440
0
votes
1
reply
1.7k
views
News:
FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS
RNA-Seq
Workshop
20 months ago by
David Langenberger
11k
0
votes
1
reply
757
views
Network Analysis of Microbiome Data: MicrobiomeAnalyst vs. Cytoscape
MicrobiomeAnalyst
20 months ago by
ohtang7
▴ 40
3
votes
1
reply
583
views
Sequence alignment
BaseCall
updated 20 months ago by
Mensur Dlakic
★ 30k • written 20 months ago by
Emmanuel
▴ 10
11
votes
4
replies
2.2k
views
Why employ normalization methods, and how can they be utilized in DEG analysis?
R
DEGs
normalization
18 months ago by
wyt1995
▴ 40
0
votes
0
replies
384
views
IC50 values for enumerated SMILES
Machine_Learning
IC50
SMILES_enumeration
Data_Augmentation
20 months ago by
Sneha
• 0
1
vote
1
reply
825
views
Samtools not installing properly on mac
umitools
samtools
ngs
updated 20 months ago by
ATpoint
89k • written 20 months ago by
Sarah
• 0
0
votes
0
replies
1.2k
views
Job:
Computational biologist / Bioinformatician (m/f/d) / (PhD), University of Oldenburg, Germany
Medical-Genetics
Research-Position
PhD
updated 20 months ago by
Ram
45k • written 20 months ago by
AHP
• 0
0
votes
2
replies
861
views
Metagenomics analysis
sediDNA
galaxy
ceramics
metagenomics
updated 20 months ago by
Mensur Dlakic
★ 30k • written 20 months ago by
Ayda Ecem
• 0
0
votes
0
replies
524
views
News:
Online course : Meta-Analysis in R
R
Meta-Analysis
Statistics
updated 20 months ago by
Ram
45k • written 20 months ago by
Physalia-courses
★ 2.6k
3
votes
5
replies
2.0k
views
Physical Protein size
proteomics
databases
updated 19 months ago by
Michael
56k • written 20 months ago by
Gabriel
▴ 180
2
votes
2
replies
743
views
Protein modeling
protein-modeling
AlphaFold2
updated 20 months ago by
GenoMax
154k • written 20 months ago by
Curious
▴ 10
2
votes
3
replies
1.1k
views
Differential gene expression design using Deseq2
RNA-seq
updated 20 months ago by
swbarnes2
15k • written 20 months ago by
drajangirija
▴ 10
1
vote
1
reply
585
views
selscan --xpehh
selscan
updated 20 months ago by
Ram
45k • written 20 months ago by
sevda
• 0
3
votes
6
replies
1.4k
views
A lot of unknown/weird gene names after alignment with cellranger or starsolo
Cellranger
20 months ago by
Tolga
▴ 30
1
vote
8
replies
1.6k
views
Can somebody guide me to setting up FAN-C module for hic analysis in my ubuntu ?
fanc
HI-C
hic
FAN-C
20 months ago by
naveedhasan2000
▴ 10
3
votes
5
replies
2.7k
views
How to collapse leaves with the same name in ETE3 tree?
python
ete3
updated 18 months ago by
Yogesh
• 0 • written 4.2 years ago by
Andrzej Zielezinski
11k
5
votes
5
replies
1.4k
views
Generate BED file
bed
20 months ago by
daffodil
▴ 10
1
vote
1
reply
1.4k
views
How to normalise Bulk RNA-seq data to account for transcript length, coverage depth, library size and batch effects?
RNA-seq
Normalisation
updated 20 months ago by
ATpoint
89k • written 20 months ago by
DJHS
• 0
2
votes
2
replies
1.8k
views
EdgeR: upregulated with respect to what group?
upregulated
edgeR
updated 20 months ago by
Gordon Smyth
★ 8.3k • written 3.1 years ago by
bioinfo2345
▴ 40
1
vote
1
reply
1.1k
views
Correct biomart version for TCGA data
TCGA
sarek
biomart
updated 20 months ago by
Maxime Garcia
▴ 410 • written 20 months ago by
ramiro.barrantes
▴ 60
0
votes
2
replies
680
views
Decision of Random Effect and Random Slope in rare cases
LMM
Model
20 months ago by
manjumoorthy95
▴ 60
5
votes
7
replies
2.1k
views
Is there a program to average read counts from technical replicates?
RNA-Seq
edgeR
updated 20 months ago by
Gordon Smyth
★ 8.3k • written 4.9 years ago by
Tota
▴ 20
1
vote
5
replies
1.6k
views
How do I work out which condition the genes are down-regulated in?
edgeR
RNA-Seq
glm
updated 20 months ago by
Gordon Smyth
★ 8.3k • written 4.7 years ago by
Tota
▴ 20
0
votes
2
replies
676
views
Can Novor.cloud be used for DIA analysis?
Novor
DIA
archaeology
ancient-protein
20 months ago by
xq241
• 0
0
votes
1
reply
2.1k
views
positive and negative Fold Change glmLRT test
RNA-Seq
log2FC
glmLRT
differential-expression
updated 20 months ago by
Ram
45k • written 6.4 years ago by
debitboro
▴ 270
0
votes
2
replies
670
views
Question regarding transcript quantification with hybrid seq
short-read
salmon
long-read
hybrid-seq
updated 20 months ago by
jared.andrews07
★ 19k • written 20 months ago by
shinyjj
▴ 60
1
vote
1
reply
1.3k
views
logFoldChange computed by EdgeR different from naive log2FCcomputed based on reads
edgeR
fold-change
updated 20 months ago by
Gordon Smyth
★ 8.3k • written 4.4 years ago by
ZheFrench
▴ 590
121,952 results • Page
153 of 2440
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Cannot reproduce. Is this run via some sort of server/HPC/scheduler/something?
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> which will also give me list of the variants Do either of these packages satisfy the requirement of generating known mutations?
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