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121,958 results • Page
170 of 2440
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Rank
Views
Votes
Replies
0
votes
0
replies
621
views
BiG-SCAPE total number of genomes issue
genomics
21 months ago by
allenmbrooke
• 0
2
votes
1
reply
787
views
OSCA -open .h5 file
OSCA
updated 21 months ago by
bk11
★ 3.1k • written 21 months ago by
Nitin
• 0
0
votes
0
replies
441
views
Random walk can be applied to any network?
network
random-walks
updated 21 months ago by
Ram
45k • written 21 months ago by
Yoomi
▴ 20
0
votes
1
reply
900
views
Using freebayes for variant calling, separate file for reference genome and expected mutations
freebayes
updated 21 months ago by
Ram
45k • written 21 months ago by
sglass
▴ 30
17
votes
5
replies
1.6k
views
Diagram tool
Python
Diagram
R
updated 21 months ago by
Ram
45k • written 21 months ago by
a3532321
• 0
1
vote
4
replies
1.1k
views
keep read association with mpileup
mpileup
samtools
updated 21 months ago by
Ram
45k • written 21 months ago by
gernophil
▴ 130
0
votes
0
replies
626
views
Trying to understand STAR fastqLog.final.out File
star
alignment
ribo-seq
updated 21 months ago by
GenoMax
154k • written 21 months ago by
Daniel
▴ 40
0
votes
0
replies
524
views
Metagene / Average Profile Plots background correction required or not?
chip-seq
cutandrun
IgG
updated 21 months ago by
Ram
45k • written 21 months ago by
Ankit
▴ 520
0
votes
0
replies
575
views
News:
Flow cytometry data analysis with R/Bioconductor course
FlowCytometry
R
Bioconductor
21 months ago by
Physalia-courses
★ 2.6k
0
votes
1
reply
790
views
Trimming reads before running Juicer
HiC
JUICER
QC
updated 21 months ago by
bk11
★ 3.1k • written 21 months ago by
isMM
• 0
1
vote
5
replies
1.3k
views
Finding the paper published from the SRA run riles
SRA
updated 21 months ago by
GenoMax
154k • written 21 months ago by
scholaraspect2008
• 0
1
vote
2
replies
1.2k
views
Annotate list of GSMxxxx GEO sample IDs with matching source GSExxx dataset identifier?
GSE
archS4
GEO
updated 21 months ago by
GenoMax
154k • written 21 months ago by
lkobzik
• 0
3
votes
19
replies
3.0k
views
extract sequence from genome by region
fasta
updated 21 months ago by
Ram
45k • written 21 months ago by
gernophil
▴ 130
0
votes
2
replies
3.0k
views
BLAST dot matrix output from command line
BLAST
RNA-Seq
updated 21 months ago by
shelkmike
★ 1.8k • written 9.8 years ago by
Nick
▴ 50
12
votes
11
replies
16k
views
6 follow
Make A Dotplot From Blast Alignment
blast
alignment
updated 21 months ago by
shelkmike
★ 1.8k • written 11.9 years ago by
mogrob.sanit
▴ 60
0
votes
0
replies
447
views
Short Reads assembly at strains level for metagenomic data
strains
assembly
metagenomic
21 months ago by
steven.blanchard92
• 0
0
votes
1
reply
920
views
Job:
PhD fellowship in bioinformatic analysis of host - pathogen interactions in the context of anti-microbial resistance in pigs
PhD
fellowship
anti-microbial-resistance
updated 21 months ago by
Ram
45k • written 21 months ago by
info
▴ 80
0
votes
0
replies
560
views
Rooting a tree in MEGA
MEGA
phylogeny
21 months ago by
andre.arrudalima
▴ 80
2
votes
2
replies
881
views
Do people use M-value in WGBS?
WGBS
Metyhlation
21 months ago by
Woobin
• 0
4
votes
11
replies
1.9k
views
Program that gives me protein similarity
protein-similarity
updated 20 months ago by
GenoMax
154k • written 21 months ago by
andre.arrudalima
▴ 80
0
votes
2
replies
944
views
How to identify regions of similarity/identity that are exclusive for a group within a bigger alingment
identity
similarity
alignment
updated 21 months ago by
Ram
45k • written 21 months ago by
andre.arrudalima
▴ 80
0
votes
2
replies
1.1k
views
Tool:
Dot_plot_like_in_BLAST, a standalone tool for making dot plots similar to what online BLAST makes
Megablast
Blastn
dot
plot
dotplot
BLAST
updated 21 months ago by
Ram
45k • written 21 months ago by
shelkmike
★ 1.8k
5
votes
3
replies
1.6k
views
My paired end data became single end data after mapping
cellranger
stringtie
updated 21 months ago by
ATpoint
89k • written 21 months ago by
jude
• 0
0
votes
2
replies
1.4k
views
Bwa-mem2 indexing not working down stream
bwa-mem2
index
fasta
21 months ago by
mgranada3
▴ 60
12
votes
6
replies
14k
views
7 follow
Is there a list of mouse housekeeping genes available to download?
RNA-Seq
genome
gene
next-gen-sequencing
updated 21 months ago by
Zongxu Zhang
• 0 • written 10.2 years ago by
Marigold77
▴ 40
2
votes
1
reply
1.2k
views
Herald:
The Biostar Herald for Tuesday, December 19, 2023
herald
updated 21 months ago by
cmdcolin
★ 4.3k • written 21 months ago by
Biostar
3.6k
1
vote
4
replies
4.4k
views
SVA Input: Should SVs be calculated on normalized data?
R
SVA
RNA-Seq
updated 21 months ago by
Ram
45k • written 7.4 years ago by
Kristin Muench
▴ 640
1
vote
1
reply
752
views
Metabolomics Data Analysis
metabolomics
omics
updated 21 months ago by
bk11
★ 3.1k • written 21 months ago by
buhbs
▴ 30
0
votes
5
replies
1.2k
views
How to Create an HMMER Profile with VFDB Files?
hmmer
annotation
21 months ago by
projetos
• 0
3
votes
6
replies
2.1k
views
No genes mapped in clusterprofiler gseGO
R
clusterProfiler
gseGO
GSEA
21 months ago by
jon50250
• 0
3
votes
3
replies
1.8k
views
Tutorial:
multi-omics data integration: a case study with transcriptomics and genomics mutation data
mutation
RNAseq
multiomics
updated 21 months ago by
sil_bioinfo
▴ 60 • written 2.1 years ago by
Ming Tommy Tang
★ 4.7k
1
vote
8
replies
5.2k
views
No gene can be mapped
R
GSEA
updated 21 months ago by
jv
★ 1.9k • written 3.7 years ago by
yang.zhizhang
▴ 10
0
votes
1
reply
597
views
NanoQC interpetation
Nanoqc
updated 21 months ago by
GenoMax
154k • written 21 months ago by
martab233
▴ 10
6
votes
3
replies
899
views
FastQC report
Fastqc
21 months ago by
martab233
▴ 10
0
votes
7
replies
1.6k
views
Search for specific SNPs in VCF files of patients.
ANNOVAR
vcftools
bcftools
GATK
VCF
updated 21 months ago by
Ram
45k • written 21 months ago by
iarmir
▴ 10
1
vote
1
reply
765
views
Can sangeranalyseR be changed to read SCF files?
ab1
scf
abi
sanger
updated 21 months ago by
trausch
★ 2.0k • written 21 months ago by
Pedro A D P
• 0
0
votes
4
replies
1.9k
views
Snakemake error AttributeError: 'Resources' object has no attribute 'tmpdir'
Python
BWA
Snakemake
updated 21 months ago by
rpolicastro
13k • written 21 months ago by
Begonia_pavonina
▴ 210
0
votes
3
replies
822
views
CWl and toil singularity image e.g busybox? Thank you
toil
singularity
updated 17 months ago by
Ram
45k • written 21 months ago by
Fadi
• 0
6
votes
7
replies
2.0k
views
How to whole genome assemble when I have three references
miseq
plasmid
assembly
illumina
beginner
updated 21 months ago by
d-cameron
★ 3.0k • written 21 months ago by
sglass
▴ 30
0
votes
0
replies
430
views
line chart for sql database single row values
sql
chart.js
updated 21 months ago by
Ram
45k • written 21 months ago by
Muhammad
• 0
5
votes
4
replies
1.9k
views
Importing modules based on python in bash script wont work
python
pipeline
conda
bash
updated 21 months ago by
cfos4698
★ 1.2k • written 21 months ago by
mary.v.volkova
▴ 20
0
votes
2
replies
733
views
Ribo-Seq Samtools pileup
samtools
pileup
21 months ago by
mplace
▴ 40
1
vote
10
replies
2.1k
views
How to obtain the gene set of KEGG module
R
gene-set
KEGG
21 months ago by
xingyu
▴ 10
1
vote
3
replies
1.1k
views
tool to find enhancer associated to gene list
r
updated 21 months ago by
ATpoint
89k • written 21 months ago by
Chironex
▴ 50
0
votes
2
replies
807
views
Confusion about "Top Features table" in cellranger web summary output for CITE-Seq libraries
single-cell
updated 21 months ago by
ATpoint
89k • written 21 months ago by
Chris Dean
▴ 420
0
votes
2
replies
1.0k
views
Why does the Pair-End RNA library exhibit a significant disparity between the mapping results of R2 compared to R1?
illumina
pair-end
r2
rna
updated 21 months ago by
GenoMax
154k • written 21 months ago by
Carolina
• 0
0
votes
3
replies
1.1k
views
Enrichment profiles from counts
genomics
damid
deeptools
single-cell
updated 21 months ago by
Ankit
▴ 520 • written 21 months ago by
ilomilo
▴ 10
0
votes
13
replies
2.5k
views
Error in schicexplorer's hicbuildmatrix
hicbuildmatrix
schic
updated 21 months ago by
ATpoint
89k • written 22 months ago by
1125195245
• 0
9
votes
8
replies
2.2k
views
RNA Contamination Tool for Developing Cell Samples
scRNA
contamination
SoupX
updated 21 months ago by
Ram
45k • written 22 months ago by
Rafael Soler
★ 1.3k
3
votes
11
replies
2.5k
views
Batch and Sample correction for downstream analysis using DESeq2
Batch-Correction
normCounts
DESeq2
Downscaling
updated 21 months ago by
jared.andrews07
★ 19k • written 21 months ago by
NorbertK
▴ 10
121,958 results • Page
170 of 2440
Recent Votes
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With 10x Visum HD : How to map the barcode id to the barcode sequence ?
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A: The Biostar Handbook. A bioinformatics e-book for beginners.
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Got it https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-inclusion-list-formerly-barcode-whitelist
Comment: limmaFit error when comparing TCGA RNA-Seq data
by
vernonlim98
• 0
Thanks for the advice. Am still new to RNA seq and R programming in general, and will just do the analysis by myself.
Answer: The Biostar Handbook. A bioinformatics e-book for beginners.
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Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
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154k
Likely because the SRA programs are doing database look ups as they retrieve the data where as with `curl` you are simply getting pre-exist…
Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
by
Guilherme
• 0
That's a great tool! I wonder why downloading through curl via SRA's ftp is SO MUCH faster than through sra toolkit programs (fastq-dump or…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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GenoMax
154k
> they should align with common sequence at some ends, making one longer consensus sequence. You don't want to simulate reads like this.…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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I believe the pairs will only have common sequence (e.g. the pairs will "overlap") if the insert size is small. the wgsim program has a fla…
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I think it's better to use the original 900 variants. If you have genotype information, you can get the fraction of heterozygous variants t…
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michael.ante
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Try to switch to percentage view of this graph. Stacked bar charts with different heights can sometimes be misleading.
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PolenP
• 0
Sorry about that. It's when I align the paired reads together like the left and righ, they should align with common sequence at some ends, …
Answer: Dictys refuses to use CUDA supported pytorch during installation
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I fixed my problem by ``` conda create -y -p /project/spott/zwjiang/conda_envs/dictys_gpu -c conda-forge python=3.9 mamba conda activat…
Comment: HIV : gtf or gff annotation
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Thank you for your response! We have just posted the full preprint to BioRxiv (https://www.biorxiv.org/content/10.1101/2025.09.24.675449v1)…
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Just adding some detail here that may help draw some connections with other posts, I did a bunch of sleuthing with selectively trimming dif…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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cmdcolin
★ 4.3k
It's a little unclear what you mean by "I was able to use wgsim, but when I tried aligning the paired-reads, it's not aligning together."
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