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116,949 results • Page
4 of 2339
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
223
views
Error in plotting PCA plot in seurat
PCA
single-cell
seurat
scRNA
RNA
updated 6 days ago by
Ram
43k • written 7 days ago by
Sumeet
• 0
0
votes
0
replies
122
views
News:
Online course: Introduction to Deep Learning
Python
Deep-Learning
Convolutional-Neural-Network
Machine-Learning
updated 6 days ago by
Ram
43k • written 6 days ago by
carlopecoraro2
★ 2.5k
4
votes
5
replies
3.4k
views
How to compare compare two Sam files to check mapping
alignment
updated 6 days ago by
DavidStreid
▴ 90 • written 6.4 years ago by
madhu.9124
▴ 60
0
votes
2
replies
166
views
How/where can I get fungal mitogenome data for analysis?
fungal
mitogenome
updated 6 days ago by
GenoMax
142k • written 6 days ago by
madders73
• 0
4
votes
2
replies
266
views
How can I analyze normalized expression data?
DEseq2
RNA-seq
6 days ago by
mnx0723
• 0
3
votes
4
replies
4.0k
views
FarmCPU - how to explain the reported 'effect'?
gwas
updated 7 days ago by
chloek88
• 0 • written 5.5 years ago by
Philipp Bayer
8.5k
4
votes
7
replies
459
views
RNA seq analysis
DESeq
RNA-seq
5 hours ago by
Jacek
▴ 10
10
votes
3
replies
320
views
TFs and Gene databases
Transcription-factor
Target
Regulatory-Networks
updated 7 days ago by
b.contreras.moreira
▴ 180 • written 7 days ago by
ijarne
• 0
0
votes
0
replies
145
views
Chance for trained without experience
bio
updated 7 days ago by
ATpoint
82k • written 7 days ago by
shehab
• 0
1
vote
2
replies
202
views
How do I change the title font size in ViolinPlot (Seurat)
Seurat
Violin-Plot
ggplot2
patchwork
7 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
124
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
7 days ago by
Omics data mining
▴ 260
0
votes
2
replies
183
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
7 days ago by
njornet
▴ 20
0
votes
2
replies
211
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 6 days ago by
Adam
▴ 30 • written 7 days ago by
Darya
• 0
0
votes
5
replies
269
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
updated 7 days ago by
Joe
21k • written 7 days ago by
Lemonhope
• 0
0
votes
0
replies
178
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
6 days ago by
Winter
• 0
0
votes
5
replies
316
views
A question about reference genome for creating the consensus sequence
fasta
fa
cram
genome
6 days ago by
me
• 0
2
votes
1
reply
146
views
java out of memory error through beagle for imutation
beagle
java.out.of.memory
imputation
7 days ago by
analyst
▴ 50
0
votes
0
replies
88
views
Blog:
Introduction to The Complete Sequence of a Human Genome
biotech
7 days ago by
usa.cd.genomics
• 0
0
votes
0
replies
98
views
Blog:
Overview of Nanopore Sequencing
biotech
7 days ago by
usa.cd.genomics
• 0
0
votes
0
replies
108
views
meffil.snp.concordance
meffil
methylation
snp_concordance
7 days ago by
kyj222637
• 0
0
votes
1
reply
158
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 6 days ago by
Bastien Hervé
5.3k • written 7 days ago by
sooni
▴ 20
1
vote
5
replies
440
views
HCL database download
HCL
updated 7 days ago by
Ram
43k • written 11 days ago by
sooni
▴ 20
0
votes
1
reply
254
views
barcode of TCR-sequencing
barcode
updated 7 days ago by
mizraelson
▴ 60 • written 15 days ago by
yueli7
▴ 250
1
vote
3
replies
249
views
STAR aligner error
RNA-seq
STAR
slurm
updated 6 days ago by
Ram
43k • written 7 days ago by
M.
▴ 30
0
votes
0
replies
99
views
monocle 3-- Could not get node in small cluster
monocle3
7 days ago by
synat.keam
▴ 100
0
votes
2
replies
211
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
6 days ago by
Nicholas
• 0
1
vote
4
replies
383
views
Understanding STAR output (Aligned.out.sam file)
STAR
paired-end
read
7 days ago by
heelpPlease
• 0
0
votes
8
replies
539
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
5 hours ago by
JACKY
▴ 140
0
votes
0
replies
118
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
7 days ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
479
views
HLA-HD tool for genomic imputation
genomics
imputation
bash
updated 7 days ago by
Javier
• 0 • written 3 months ago by
fra.r.silvestro
▴ 10
0
votes
1
reply
260
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 7 days ago by
GenoMax
142k • written 7 days ago by
Sony
▴ 10
5
votes
5
replies
299
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
7 days ago by
Chris
▴ 280
0
votes
2
replies
224
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 6 days ago by
swbarnes2
14k • written 8 days ago by
ahmad.sajad4541
• 0
1
vote
9
replies
377
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 5 days ago by
i.sudbery
19k • written 8 days ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
172
views
student
epitranscriptomics
updated 8 days ago by
ATpoint
82k • written 8 days ago by
useriwa
• 0
0
votes
3
replies
183
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 7 days ago by
GenoMax
142k • written 8 days ago by
Assa Yeroslaviz
★ 1.8k
7
votes
1
reply
184
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 8 days ago by
dariober
14k • written 8 days ago by
nhaus
▴ 360
2
votes
2
replies
183
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
7 days ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
268
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 8 days ago by
Weiwen
• 0 • written 9 days ago by
MICOS
▴ 10
0
votes
4
replies
296
views
Correlation Analysis
statistics
methylation
NGS
expression
4 days ago by
Researcher
▴ 30
1
vote
2
replies
187
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
7 days ago by
robert.flynn.21
• 0
1
vote
1
reply
224
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 8 days ago by
Michael
54k • written 8 days ago by
Guillermo
• 0
1
vote
5
replies
361
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 7 days ago by
Michael
54k • written 8 days ago by
qwertyuiop26
• 0
0
votes
1
reply
184
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 8 days ago by
ATpoint
82k • written 8 days ago by
MAPK2
▴ 40
0
votes
2
replies
286
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 8 days ago by
Xiaofen
• 0 • written 8 days ago by
toddknutson
▴ 60
0
votes
1
reply
145
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Cancer-Research
ATAC-seq
updated 1 day ago by
Ram
43k • written 8 days ago by
David
• 0
2
votes
4
replies
265
views
Where to get the following bed file?
WES
bed
reference
file
updated 8 days ago by
GenoMax
142k • written 8 days ago by
wyuan37
• 0
0
votes
0
replies
118
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
8 days ago by
Scott McKay
▴ 30
0
votes
0
replies
109
views
Cellphonedb results
cpdb
visulization
cellphonedb
8 days ago by
piotto
▴ 20
0
votes
0
replies
150
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
8 days ago by
belloy
• 0
116,949 results • Page
4 of 2339
Recent Votes
Answer: Add samples IDs to Seurat object when integrating different samples to do differ
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The Biostar Handbook. A bioinformatics e-book for beginners.
The Biostar Handbook. A bioinformatics e-book for beginners.
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Comment: genome finishing
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I may be wrong here so someone feel free to correct me, but I've never noticed a variants file from `SPAdes`, and certainly never used one …
Comment: perseus software (version 1.5.5)
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21k
You will need to obtain the software from an official source. I believe Perseus is a paid-for program and as such sharing via the forum wou…
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This post does not fit the theme of this forum.
Comment: Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
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this is not bioinformatics and is not a tool and as such it is off-topic on this site
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Instead of simply posting a chunk of code it would be useful to add a line or two to say where this could would be useful. Not immediately …
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142k
Thanks for the link. We never use "pod5_fail" folders when re-basecalling so we did not see this issue. Current version of MinKNOW now make…
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Answer: Annotating file using bcftools
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I think your're annotating $REF/All_20180423.vcf.gz (DBSNP isn't it ? = no genotype) with your vcf as the database ro_imputed_hrcgrch37.R2_…
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I had the same problem in this iusse [https://github.com/nanoporetech/dorado/issues/603][1] and I solved it as they say here [1]: https…
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Looking at this briefly, it is small sample size and you do not correct for any potential confounders. Use PCA or MDS to explore the data. …
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> It is confirmed (and solved in another thread) that we have significant overlapping paired end reads. Can you provide a reference to sai…
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> I get the exact same read with the same ID and all more than once If you have short(er) reads you could be seeing secondary alignments. …
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Hi, I'm also working with ONT data and with dorado. From experience I tell you that some versions of MInKNOW have bad management of fast5 f…
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