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121,623 results • Page 424 of 2433
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1
vote
9
replies
2.3k
views
how to convert a protein sequence into a list of characters
python list
updated 3.2 years ago by ▴ 930 • written 3.2 years ago by ▴ 20
1
vote
2
replies
839
views
Processing preanalyzed Bulk RNA sequencing data
visualization preanalyzed Bulk RNA data Novogene
3.2 years ago by nils.simon.biology ▴ 10
8
votes
7
replies
1.6k
views
Weird fastq quality distributions
fastq distribution
updated 3.2 years ago by 152k • written 3.2 years ago by ▴ 30
0
votes
2
replies
826
views
TopHat2 to align RNA with or without annotation file
RNAseq GFF GTF TopHat2
3.2 years ago by mario_de_manner ▴ 20
0
votes
8
replies
3.2k
views
Compare two sequences in python
python pandas dataframe csv
3.2 years ago by Debut ▴ 20
1
vote
4
replies
1.2k
views
Summarise bases from alignment
alignment
updated 3.2 years ago by 166k • written 3.2 years ago by ▴ 10
0
votes
2
replies
942
views
The minor allele frequency
SNP R MAF
3.2 years ago by Negatyvna • 0
1
vote
2
replies
780
views
SV on single-end data
sequencing variant calling
3.2 years ago by deniselavezzari • 0
2
votes
1
reply
745
views
What are the general strategies in assessing new differentially methylation positions obtained from EWAS?
methylation EWAS DNA
updated 2.6 years ago by 45k • written 3.2 years ago by ▴ 270
0
votes
0
replies
535
views
Unsupervised Learning to Find Alternatively Spliced Sites in RNAseq Data
RNAseq Machine Splicing Clustering Learning Alternative
3.2 years ago by saipra003 ▴ 20
0
votes
0
replies
1.1k
views
TypeError: webpack.NoErrorsPlugin is not a constructor
panX
3.2 years ago by Neel ▴ 20
1
vote
5
replies
2.5k
views
How to find shortest lenth or longest length from fasta file
fasta
3.2 years ago by Neel ▴ 20
5
votes
5
replies
1.3k
views
How to replace exactly 100 Ns
Fasta
updated 3.2 years ago by 13k • written 3.2 years ago by • 0
2
votes
1
reply
1.7k
views
Bcftools equivalent of vcftools conversion to ped & map
bcftools
updated 3.2 years ago by 11k • written 3.2 years ago by ▴ 380
4
votes
3
replies
2.1k
views
computing chromothripsis on cancer genomes
snp cnv sv cancer
updated 3.2 years ago by ▴ 340 • written 7.0 years ago by ★ 1.4k
0
votes
0
replies
697
views
Conversion between hg19 and hg38 - Problem brought by highly similar sequences
liftOver conversion coordinate remapping hg19-hg38
3.2 years ago by cisplatin1987 ▴ 10
0
votes
1
reply
706
views
project_settings_dna_vs_dna.conf' does not exist
CGView CCT
updated 3.2 years ago by ▴ 930 • written 3.2 years ago by ▴ 20
0
votes
1
reply
631
views
how do I determine whether proteins share an ancestor?
hmmer alignment homology
updated 3.2 years ago by ★ 29k • written 3.2 years ago by • 0
0
votes
1
reply
945
views
Job: Now hiring! Multiple roles available at Genomenon. Apply today!
mastermind genomics genomenon
updated 3.2 years ago by 21k • written 3.2 years ago by • 0
0
votes
0
replies
421
views
Can I infer the Zygosity of a CNV based on the number SNPs call in its region?
CNV
3.2 years ago by ManuelDB ▴ 110
1
vote
1
reply
1.2k
views
R SBGNview - can't change data ID even though format is correct
pathway SBGNview R
updated 3.2 years ago by ▴ 10 • written 4.0 years ago by ▴ 20
0
votes
0
replies
509
views
scRNA-seq benchmark data
scRNA_seq
3.2 years ago by fifty_fifty ▴ 90
0
votes
0
replies
461
views
Can ART reads generator create NextSeq 550 synthetic reads?
ART reads synthetic
3.2 years ago by Tawny ▴ 180
0
votes
1
reply
2.5k
views
WGCNA blockwiseConsensusModules : number of colors and objects in dendrogram don't match
wgcna blockwiseConsensusModules
updated 3.2 years ago by • 0 • written 5.7 years ago by ▴ 700
0
votes
0
replies
832
views
Job: Paid Internship on the Experimental Study of Regulatory Genes in Alzheimer's Disease (M/F), Luxembourg
internship laboratory Alzheimers-disease
updated 3.1 years ago by 45k • written 3.2 years ago by ▴ 130
6
votes
8
replies
3.4k
views
6 follow
PCA for BIG DATA
R PCA
3.2 years ago by Giulia.cosenza ▴ 110
0
votes
8
replies
1.8k
views
How annotation can be validated
VEP
3.2 years ago by Manuel ▴ 50
0
votes
0
replies
423
views
How to build a Pan/Core curve ?
pan-genome
3.2 years ago by damigonzalez38 • 0
1
vote
5
replies
2.2k
views
Issue running VEP with GTF due to Tabix error
ensembl vep sequencing tabix perl
updated 3.2 years ago by 45k • written 3.2 years ago by • 0
2
votes
2
replies
2.1k
views
UCSC hg38 FASTA File
UCSC RNASeq hg38
updated 3.2 years ago by ★ 1.8k • written 3.2 years ago by • 0
0
votes
1
reply
1.5k
views
What tools to use to generate these "chromothripsis" plot?
rearraangment CNA wgs SV structural
updated 3.2 years ago by ▴ 20 • written 4.3 years ago by • 0
0
votes
3
replies
941
views
comparing and aligning 2 de novo genomes
deno alignment genome
updated 3.2 years ago by ▴ 600 • written 3.2 years ago by • 0
3
votes
12
replies
2.9k
views
Amino Acid identity matrix help
Linux shell-scripting
updated 2.6 years ago by 45k • written 3.2 years ago by ▴ 30
7
votes
9
replies
2.4k
views
Do you need to define adapter sequences for trimming and QC tools?
adapters fastp illumina trimming
3.2 years ago by amy__ ▴ 250
1
vote
1
reply
863
views
Help me with bacteria classification
Bacteria sra NCBI
updated 3.2 years ago by 102k • written 3.2 years ago by ▴ 110
2
votes
3
replies
1.7k
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 2.6 years ago by 45k • written 3.2 years ago by ▴ 30
2
votes
3
replies
1.1k
views
How to interpret flagstat output
sequencing reads
updated 3.2 years ago by 102k • written 3.2 years ago by • 0
1
vote
1
reply
2.8k
views
Seurat: (Box)plot unscaled gene expression of a list of genes by cluster
Seurat R cell single
updated 3.2 years ago by ★ 1.9k • written 3.2 years ago by ▴ 260
0
votes
0
replies
496
views
Syndip benchmark dataset
CHM1 CHM13 variants syndip
3.2 years ago by mera El ▴ 10
0
votes
4
replies
1.6k
views
RPKM, how to normalize for library size
rpkm dna-seq metagenomes
updated 3.2 years ago by 102k • written 3.2 years ago by • 0
1
vote
3
replies
1.6k
views
Getting fastq files as the output of bowtie2
bowtie2
updated 3.2 years ago by 21k • written 3.2 years ago by ▴ 280
2
votes
6
replies
2.1k
views
How to extract reads that map exclusively to a single site with 1 or zero mismatches from BAM files
RNAseq Samtools
updated 3.2 years ago by 102k • written 3.2 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Samtools depth with 0-based BED file
samtools sam bam bed
updated 2.1 years ago by 45k • written 3.2 years ago by ▴ 10
0
votes
0
replies
607
views
HTSeq-count: proper pairs in bam file
BWA -count RNAseq HTseq
3.2 years ago by mario_de_manner ▴ 20
0
votes
4
replies
1.6k
views
Job: Principal Computational Biologist
immunoinformatics computational-immunology machine-learning
updated 2.5 years ago by 45k • written 3.2 years ago by • 0
2
votes
2
replies
1.0k
views
Is there any tutorial page that tells you how to extract read count from illumina single-cell RNAseq fastq file?
illumina scRNA-seq
3.2 years ago by Simon Ahn ▴ 10
0
votes
4
replies
1.4k
views
Conversion of gene symbol to refSeqID
RNAseq Gene conversion symbol
updated 3.2 years ago by ★ 3.8k • written 3.2 years ago by • 0
1
vote
0
replies
1.6k
views
Job: Postdoctoral Fellowship in Cancer Radiomics + Genomics
radiomics genomics UHN postdoc
updated 3.2 years ago by ▴ 20 • written 3.2 years ago by ▴ 50
0
votes
0
replies
614
views
scRNA-seq filtering thresholds
filtering scRNA-seq
3.2 years ago by melissachua90 ▴ 70
16
votes
4
replies
9.0k
views
Samtools flagstat number of reads do not match actual total number of reads.
flagstat samtools
updated 2.4 years ago by 45k • written 9.2 years ago by 5.9k
121,623 results • Page 424 of 2433
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Problem with .bed file
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Comment: New to Bioinformatics, Phage genome investigation
Comment: Feedback needed on new user-friendly BED file tool
C: BRIG: How to use a multi fasta file as query
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Comment: Intro + Question by akshitabadrinath • 0
Thanks @yokofakun for your reply. Can contributions be in the form of documentation to the code base?
Comment: Intro + Question by Pierre Lindenbaum 166k
https://github.com/google/deepvariant/blob/r1.9/CONTRIBUTING.md > We cannot merge external pull requests into the DeepVariant repository …
Comment: New to Bioinformatics, Phage genome investigation by Michael 56k
Ok, thank you for the explanation. As I said, I am no expert in phage biology. > reading a ton of research papers and collecting specific…
Comment: New to Bioinformatics, Phage genome investigation by Hanhan2000 • 0
Strictly lytic phages will not have integrate or excisionase, as those are only required for the dormant lysogenic cycle. Finding their pre…
Comment: Feedback needed on new user-friendly BED file tool by GenoMax 152k
While new tools are always welcome (specially if they are easier to use for newcomers) you provide no links for the tool so people can try …
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Finding genes by similarity in a few small genomes is an easy task in bioinformatics, but you must make sure that you are asking the right …
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You can email admin at biostars dot org with this question. Also ask your friend to check with their bank that their credit card is valid…
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found some data here in case someone needs them in the future: https://xenabrowser.net/datapages/?cohort=TCGA%20Pan-Cancer%20(PANCAN)&rem…
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Hi all, Thank you for the helpful suggestions. In my dataset, I observed a significant effect of Sex, so I subset the data to include only…
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Hey @severalorks, Were you able to figure it out? I'm curious how you built the consensus sequences and aligned them to human proteins. I n…
Comment: How to pull out protein sequences from from BAM files containing genomic alignme by RD ▴ 20
Hey @Julia92796, Were you able to figure it out? I'm curious how you built the consensus sequences and aligned them to human proteins. I no…
Comment: STAR alignment to small fasta file failing by GenoMax 152k
What is the length of fasta reference sequences?
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What kind of sequencer is this data from?
Comment: STAR aligned BAM files by Ram 45k
> but it seems that i cannot directly use these BAM files in STAR. You most definitely can.
Answer: STAR aligned BAM files by Ram 45k
You cannot use STAR to get isoform level counts, only gene level counts and you can do that using an input BAM. For transcript level counts…
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