Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
121,919 results • Page
64 of 2439
Sort: Rank
Rank
Views
Votes
Replies
1
vote
2
replies
1.3k
views
Question about various of graph format. How to get the sequence and source of a specific node?
vg
11 months ago by
chuanj8848
• 0
0
votes
0
replies
373
views
Facing problems in analysis of bisulfite sequencing data
sequencing
Bisulfite
updated 11 months ago by
GenoMax
153k • written 11 months ago by
SHREYA
• 0
2
votes
2
replies
771
views
Can anyone share with me the R code for GSEA analysis?
R
code
GSEA
updated 11 months ago by
GenoMax
153k • written 11 months ago by
nuorain
▴ 40
0
votes
2
replies
829
views
extracting reads from FASTA/FASTQ file
RNA-seq
RNA
updated 11 months ago by
GenoMax
153k • written 11 months ago by
bleven
• 0
0
votes
0
replies
821
views
Forum:
epitope-TCR binding prediction, vaccine design
vaccine
epitope-TCR
binding
11 months ago by
Dara
• 0
0
votes
0
replies
912
views
Forum:
layoffs in biotech
layoff
biotech
11 months ago by
Dara
• 0
1
vote
1
reply
857
views
How to use lme4() to perform differential expression on bulk RNA seq data with multiple random effects?
bulkRNAseq
lme4
updated 11 months ago by
ATpoint
89k • written 11 months ago by
bioyas
▴ 20
0
votes
1
reply
802
views
DeSeq2 filter transcripts
DeSeq2
RNA-seq
RNA
updated 11 months ago by
seidel
11k • written 11 months ago by
bleven
• 0
0
votes
0
replies
388
views
Setting up a case control with 18 VCFs in plink?
case-control
plink
WGS
11 months ago by
atopasn1
• 0
0
votes
1
reply
661
views
Aligning to transcriptome with STAR generates error in Salmon sequence length
STAR
Salmon
RNAseq
updated 11 months ago by
Dunois
★ 2.9k • written 11 months ago by
Lena
• 0
0
votes
1
reply
606
views
Gnomad result tables column meaning.
Gnomad
annotation
updated 11 months ago by
Pierre Lindenbaum
166k • written 11 months ago by
ijarne
▴ 20
3
votes
4
replies
1.2k
views
DESeq2: adjusted p-values become NA when sub-setting samples
R
DEG
RNA-seq
DESeq2
updated 10 months ago by
GenoMax
153k • written 11 months ago by
txema.heredia
▴ 250
2
votes
2
replies
1.0k
views
Trouble with Biopython residue depth
Proteins
Depth
Biopython
Residue
updated 11 months ago by
Wayne
★ 2.1k • written 11 months ago by
Anand KR
• 0
0
votes
2
replies
694
views
all genes have negative logFC edgeR
edgeR
updated 11 months ago by
rfran010
★ 1.6k • written 11 months ago by
xiaoyongli407
• 0
0
votes
2
replies
893
views
Split vcf file to fit tbi requirements
snp
HaplotypeCaller
vcf
gatk
11 months ago by
cassandriatayfernandez
• 0
1
vote
0
replies
397
views
Dealing with indels in a fungal ITS2 MSA
indels
ITS2
MSA
alignment
11 months ago by
Sergio A.S.
▴ 10
0
votes
1
reply
850
views
GPU-accelerated multiple sequence alignment tools
Multiple-Sequence-Alignment
updated 11 months ago by
Ram
45k • written 11 months ago by
jet
• 0
2
votes
6
replies
1.6k
views
WGCNA package.
RNA-seq
WGCNA
11 months ago by
Jaber
▴ 30
0
votes
0
replies
309
views
Paired splsda
splsda
updated 11 months ago by
Ram
45k • written 11 months ago by
michelafrancesconi9
▴ 20
0
votes
3
replies
804
views
Mapping to transcriptome without gtf annotation
transcriptome
Mapping
assembly
updated 11 months ago by
Michael
56k • written 11 months ago by
ZuelTech
• 0
0
votes
1
reply
582
views
Getting data from NCBI using Python
Ensembl
pyEnsembl
RNA-seq
updated 11 months ago by
Ram
45k • written 11 months ago by
Quân
• 0
2
votes
6
replies
1.9k
views
Mapping all 32-mers within Hamming Distance = 3
hamming
alignment
kmer
ngs
short
updated 11 months ago by
mourisl
▴ 30 • written 2.8 years ago by
giova34
▴ 10
0
votes
0
replies
371
views
How to work with Low allele Depth Variants in Strelka Variant caller
strelka
allelic-depth
low-GQX
updated 11 months ago by
Ram
45k • written 11 months ago by
abhishekghadge
▴ 40
0
votes
1
reply
1.4k
views
What is the meaning of 'a too large, ITMAX too small in gamma countinued fraction (gcf)'
meta-analysis
METAL
GWAS
updated 11 months ago by
Ram
45k • written 2.5 years ago by
ymberzal
• 0
0
votes
0
replies
1.8k
views
METAL meta-analysis software crash
metal
meta-analysis
gwas
updated 11 months ago by
Ty
• 0 • written 5.5 years ago by
ydadmehr
• 0
1
vote
3
replies
679
views
cutadapt not working when calling in a bash code with qsub
qsub
trim
cutadpat
updated 11 months ago by
ATpoint
89k • written 11 months ago by
Meghan.T
▴ 10
2
votes
3
replies
1.1k
views
Removing features from RNA assay in seurat
R
SEURAT
sc-RNA-Seq
updated 11 months ago by
yura.grabovska
▴ 820 • written 11 months ago by
Varun Gupta
★ 1.3k
0
votes
0
replies
499
views
News:
Eukaryotic Genome Assembly Using PacBio and Hi-C course (4-8 November)
Genome-Assembly
PacBio
Long-reads
Hi-C
11 months ago by
Physalia-courses
★ 2.6k
0
votes
6
replies
1.5k
views
miRNAseq - over-presented sequence in negative control
miRNAseq
adaptor
dimer
updated 11 months ago by
Ant
▴ 50 • written 2.0 years ago by
MH85
▴ 20
0
votes
0
replies
342
views
Differential expression analysis from .chp files with Limma
expression
limma
IonTorrent
differential
11 months ago by
Rogerio Ribeiro
▴ 110
1
vote
2
replies
988
views
Genome Polishing nextPolish
nextpolish2
nextpolish
pilon
racon
11 months ago by
SomeOne
▴ 240
0
votes
1
reply
515
views
co-occurrence matrix from my VCF file
co-occurrence
vcf
updated 11 months ago by
robben
• 0 • written 11 months ago by
HarperReed
▴ 10
3
votes
6
replies
2.8k
views
Center multiple pheatmap
pheatmap
patchwork
updated 11 months ago by
yura.grabovska
▴ 820 • written 4.8 years ago by
5utr
▴ 370
5
votes
3
replies
874
views
creat histogram in R
R
ggplot2
hist
updated 11 months ago by
ATpoint
89k • written 11 months ago by
G.S
▴ 60
6
votes
5
replies
1.4k
views
constructing gene-based pangenome from orthofinder output file
orthofinder
pan-genome
updated 11 months ago by
Dunois
★ 2.9k • written 11 months ago by
analyst
▴ 70
7
votes
6
replies
1.3k
views
Genome Assembly Sorting
genome
assembly
sorting
updated 11 months ago by
GenoMax
153k • written 11 months ago by
SomeOne
▴ 240
0
votes
3
replies
1.1k
views
Install PacBio lima via conda fails
conda
updated 11 months ago by
colindaven
7.9k • written 11 months ago by
michael.flower.14
▴ 210
1
vote
3
replies
771
views
human_variation_vcf
BaseRecalibrator
11 months ago by
runfreely2
• 0
2
votes
2
replies
640
views
How to interpret Eigengene dendrongram results
Eigengene
dendrogram
11 months ago by
nuorain
▴ 40
7
votes
24
replies
5.3k
views
GTF file
cellranger-arc
GTF
cellranger-arc-2.0.2
11 months ago by
IrK
▴ 100
2
votes
6
replies
1.2k
views
Explanation of DESeq factor leveling
DESeq
11 months ago by
bthom
▴ 10
0
votes
1
reply
451
views
Allele frequency plot : imputed vs reference panel variants
imputation
genotyping
reference
updated 11 months ago by
BlastedBadger
▴ 160 • written 11 months ago by
hello_genome
• 0
0
votes
1
reply
475
views
rRNA contamination after filtering
QC
contamination
ribosomal-RNA
updated 11 months ago by
GenoMax
153k • written 11 months ago by
sleepystudent
• 0
1
vote
0
replies
379
views
Repeated ensembl IDs in microarray DEG analysis
R
annotation
DEGs
microarray
limma
11 months ago by
Pereira G
▴ 10
0
votes
2
replies
777
views
How to filter annotated genes overlapping with TE/repeat element?
genome
gene
annotation
11 months ago by
Yao
▴ 30
25
votes
13
replies
2.8k
views
6 follow
Forum:
How to do datamining in bioinformatics
data-mining
updated 11 months ago by
LauferVA
4.8k • written 11 months ago by
Biomed-jeh
▴ 70
2
votes
3
replies
2.9k
views
Why parametric linkage analysis on Merlin gives zero "0" LOD score?
SNP
alohomora
merlin
updated 11 months ago by
Ram
45k • written 7.4 years ago by
eDNAuRNA
▴ 20
1
vote
2
replies
1.0k
views
Single-cell RNA differential expression with an unbalanced number of cells between conditions
single-cell
differential-expression
11 months ago by
Javi.villegas21
• 0
0
votes
1
reply
445
views
What are the epithelial cells subtype in esophagus tissue ?
python
scanpy
anndata
single-cell
updated 11 months ago by
ATpoint
89k • written 11 months ago by
AlexStar
▴ 200
0
votes
0
replies
467
views
News:
ONLINE COURSE – Genome Assembly and Annotation (GAAA01)
Annotation
Genome
Assembly
Genomics
updated 11 months ago by
GenoMax
153k • written 11 months ago by
oliverhooker
▴ 110
121,919 results • Page
64 of 2439
Recent Votes
Answer: [vg giraffe] Unable to add read group to BAM file
Comment: [vg giraffe] Unable to add read group to BAM file
Answer: [vg giraffe] Unable to add read group to BAM file
Answer: vcf multisample
Answer: vcf multisample
Answer: vcf multisample
Answer: Different UMAP for batch correction in R and Pytho
Recent Locations •
All
United States,
1 minute ago
Chile,
1 minute ago
United States,
5 minutes ago
Oviedo,
10 minutes ago
London, United Kingdom,
13 minutes ago
United States,
19 minutes ago
United States,
19 minutes ago
Recent Awards •
All
Teacher
to
Pierre Lindenbaum
166k
Scholar
to
saruman
▴ 10
Popular Question
to
Luca Arbore
▴ 10
Popular Question
to
David Langenberger
11k
Popular Question
to
akshay
▴ 10
Scholar
to
colindaven
7.9k
Popular Question
to
Mark
▴ 60
Recent Replies
Comment: Help with species tree with orthofinder, iqtree and branch labeling
by
GenoMax
153k
> I don’t have clear species labels in my headers, only sequence IDs. I have not used iqtree, so this is only a thought ... should it be y…
Comment: Help with species tree with orthofinder, iqtree and branch labeling
by
san96
▴ 190
Thank you so much.
Comment: [vg giraffe] Unable to add read group to BAM file
by
saruman
▴ 10
Yes, it seems so. Thank you.
Comment: cellranger mkref fail/error
by
GenoMax
153k
> The thing is that I do not have a genome for these organisms. That is not what `cellranger mkref` is expecting. You could consider alt…
Comment: cellranger mkref fail/error
by
tatsispolychronis
• 0
The thing is that I do not have a genome for these organisms. i made a transcriptome using TRinity and this is what I am feeding it. I do n…
Comment: Genome Assembly QC from BAM files
by
SomeOne
▴ 240
Hi, I am not sure if i can call them good assemblies. Although based on QUAST and BUSCO stats, everything looks too good but somehow i hav…
Comment: cellranger mkref fail/error
by
GenoMax
153k
You need to provide the genome reference for the `--fasta` option as noted in https://www.10xgenomics.com/support/software/cell-ranger/late…
Answer: Methods to analyse structural similarity: co-evolution vs convergence
by
Joe
22k
Without historical data (ancient DNA) there's no way to ever really know this for certain. The best we can do is make inferences based on t…
Answer: vcf multisample
by
Pierre Lindenbaum
166k
eg : https://ega-archive.org/datasets/EGAD50000001683 > Merged VCF file from sporadic Meniere disease cohort (found using https://dat…
Comment: Genome Assembly QC from BAM files
by
GenoMax
153k
Since this saga has been on going for a long time, it will be helpful to add a comment as to how you finally got to this point of what seem…
Comment: Methods to analyse structural similarity: co-evolution vs convergence
by
dthorbur
★ 3.1k
A few comments. 1. Coevolution of a trait between 2 organisms can end up with a convergent structure with another organism. It's not e…
Comment: Genome Assembly QC from BAM files
by
SomeOne
▴ 240
Thank you. Based on the description these two look really what i wanted to see.
Comment: miRNA low mapping ratings
by
i.sudbery
22k
Also, can you just clarify that the output above is from cutadapt or form miRDeep2?
Comment: miRNA low mapping ratings
by
i.sudbery
22k
What happens if you remove the `--minimum-length` requirement to cutadapt, and then run fastqc on the result - what size disitribution do y…
Answer: Genome Assembly QC from BAM files
by
colindaven
7.9k
You can have a look at the tools in the PAQman pipeline https://github.com/SAMtoBAM/PAQman, and maybe also Inspector https://github.com/Mag…
Traffic: 3180 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6