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122,202 results • Page
669 of 2445
Sort: Rank
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Views
Votes
Replies
4
votes
2
replies
1.5k
views
Need help in doing proteomics analysis
proteomics
updated 4.6 years ago by
cpad0112
21k • written 4.6 years ago by
rishav513
▴ 30
0
votes
0
replies
967
views
Job:
Postdoctoral Researcher in Computational Biology
computationalbiology
germany
microbiome
postdoc
4.6 years ago by
melanie.schirmer
▴ 10
0
votes
2
replies
834
views
Design an algorithm for identifying long AT runs of more than 5 times.
DNA
4.6 years ago by
Siva
• 0
0
votes
0
replies
1.0k
views
Metaquast largest contig by species identical for most species in the metagenomic assembly
metagenomics
species
quast
contig
metaquast
4.6 years ago by
Matteo Schiavinato
★ 3.7k
2
votes
4
replies
2.8k
views
CPM threshold for RNASeq count data
Count
RNASeq
cpm
filtering
edgeR
4.6 years ago by
Will
▴ 20
0
votes
0
replies
373
views
How to convert the to ratio
sum-of-pairs
4.5 years ago by
aa
• 0
0
votes
0
replies
716
views
plink - generate VCF
plink
4.6 years ago by
esimonova.me
▴ 30
0
votes
1
reply
869
views
Given a disease name, which R package can return relevant tissues of pathogenic?
pathogenic
tissue-of-disease
4.6 years ago by
Shicheng Guo
★ 9.6k
0
votes
1
reply
1.1k
views
Reactome physical association pairs in the human protein-protein interactions data
reactome
network
ppi
updated 4.6 years ago by
Jean-Karim Heriche
27k • written 4.6 years ago by
ebrudermanver
▴ 100
2
votes
3
replies
2.2k
views
Can I combine both single and paired end RNA-seq replicates for analysis?
RNA-seq
sequencing
updated 4.6 years ago by
ATpoint
90k • written 4.6 years ago by
bbyturner
• 0
3
votes
6
replies
3.2k
views
Samtools view does not output all reads
samtools
bam
4.6 years ago by
b10hazard
• 0
0
votes
2
replies
1.3k
views
How to achieve the goal "only genes with non-zero expression values in at least half of the sample type were kept"
RNA-seq
TCGA
updated 2.7 years ago by
Ram
45k • written 4.6 years ago by
zhangzd168
• 0
0
votes
2
replies
1.7k
views
How to filter up and down regulated genes in a list of DE genes from DEseq?
upanddownregulated
genes
updated 4.6 years ago by
lmlukoseviciute
▴ 60 • written 4.6 years ago by
arulin
• 0
0
votes
0
replies
658
views
TargetScan query with "3prime pairing", "context+ score" with R
R
targetscan
4.6 years ago by
ahadli.farid
▴ 50
0
votes
0
replies
749
views
Coverage vs Identity, which is more important ?
blast
genes
4.6 years ago by
ddh8602
• 0
1
vote
2
replies
1.1k
views
Modifying dataframe in R based on Unique values in 2nd column
R
dataframe
4.6 years ago by
salman_96
▴ 70
0
votes
3
replies
1.1k
views
Rna seq analysis
factors
transcription
motif
4.6 years ago by
rheab1230
▴ 150
5
votes
6
replies
2.3k
views
How to structure my edgeR model to incorporate a temporal variable and 2 categorical variables?
edgeR
differential-gene-expression
glm
r
4.6 years ago by
O.rka
▴ 750
0
votes
0
replies
822
views
Watterson Estimate VCFs with different coverage
software
vcf
popgen
4.6 years ago by
timothy.delory
▴ 20
4
votes
3
replies
2.5k
views
Scatterplot ggplot: too many overlapping point make an area magnified/ increase specific areas
overlapping
ggplot
scatterplot
r
updated 4.6 years ago by
cpad0112
21k • written 4.6 years ago by
camillab.
▴ 160
1
vote
3
replies
1.2k
views
found unannotated gene via rna-seq, can i use public datasets (raw data) to find clinical info about this gene?
rna-seq
lncrna
updated 4.6 years ago by
Ram
45k • written 4.6 years ago by
Taktak31
• 0
0
votes
2
replies
1.3k
views
design matrix considering treatment, timepoints and batches
limma
design
microarray
experimental
updated 4.6 years ago by
Kevin Blighe
★ 90k • written 4.6 years ago by
Iván
▴ 60
1
vote
3
replies
1.3k
views
Sequencing coverage for phylogenomic studies
philogenomics
Nestseq
Rnaseq
4.6 years ago by
tiagobellintani
▴ 40
0
votes
1
reply
983
views
How to compare enrichment scores?
enrichment
scores
updated 4.6 years ago by
Kevin Blighe
★ 90k • written 4.6 years ago by
fpizzagalli
• 0
1
vote
3
replies
1.6k
views
Gene annotation BLAST results only finding one hit
BLAST
Gene-Annotation
Pathwaysproject
D.takahashii
updated 4.6 years ago by
lieven.sterck
16k • written 4.6 years ago by
Anna
• 0
1
vote
1
reply
4.2k
views
Filter SingleCellExperiment object just by one gene expression
SingleCellExperiment
updated 4.6 years ago by
benformatics
4.2k • written 4.6 years ago by
ZheFrench
▴ 590
1
vote
5
replies
1.7k
views
R and GEO
GEO
updated 4.4 years ago by
Ram
45k • written 4.6 years ago by
geyucoco
• 0
0
votes
4
replies
1.7k
views
How to select algorithm model for PRS score predict disease?
PRS
Prediction
Model
4.6 years ago by
li
• 0
4
votes
4
replies
1.7k
views
Project for a beginner
python
Project
beginners
updated 4.4 years ago by
Ram
45k • written 4.6 years ago by
taimoorkhan
• 0
0
votes
3
replies
1.6k
views
Jointly calling samples from different studies, which have different read lengths?
joint
variant
gatk
calling
updated 4.6 years ago by
heskett
▴ 110 • written 4.6 years ago by
boxate1618
▴ 60
0
votes
2
replies
992
views
RNAseq Per tile sequence quality question
RNAseq
fastqc
4.6 years ago by
cook.675
▴ 250
0
votes
1
reply
1.1k
views
Question about ExomeDepth's output
software error
R
updated 4.6 years ago by
GenoMax
154k • written 4.8 years ago by
zengqian213
• 0
5
votes
0
replies
1.6k
views
News:
Bioinformatics Contest 2021
bioinfcontest
contest
bioinforussia
updated 2.8 years ago by
Ram
45k • written 4.6 years ago by
l_antonova
▴ 50
1
vote
4
replies
3.9k
views
Using ExomeDepth for GRCH38 processed samples to call CNVs
Exome
GrCh38
ExomeDepth
CNV
updated 2.2 years ago by
Joel Wallenius
▴ 220 • written 4.8 years ago by
nkausthu
▴ 40
9
votes
19
replies
6.2k
views
duplicate gene IDs with different length after cd-hit-est dereplicate and cluster
replicate
duplicate
cd-hit
cluster
4.6 years ago by
phxu6780
• 0
0
votes
0
replies
1.3k
views
Job:
Bioinformatician @IGC - Portugal
bioinformatician
facility
4.6 years ago by
antonioggsousa
3.4k
0
votes
1
reply
777
views
Database Containing Hla Alleles And Snps
allele
HLA
updated 4.6 years ago by
GenoMax
154k • written 4.6 years ago by
aistezemaityt
• 0
3
votes
3
replies
3.9k
views
New to ATAC-seq single cell
atac-seq
peak
updated 4.6 years ago by
Friederike
9.0k • written 4.6 years ago by
zizigolu
★ 4.4k
3
votes
3
replies
2.7k
views
Negative heritability and filtering summary statistics
ldsc
partitioned heritability
3.2 years ago by
gokberk
▴ 90
0
votes
1
reply
892
views
GenomeStudio in a cloud service
genomestudio
aws
updated 4.6 years ago by
GenoMax
154k • written 4.6 years ago by
fluentin44
• 0
1
vote
1
reply
1.3k
views
Correcting for batch effect in survival data
survival
batch-effect
updated 15 months ago by
Ram
45k • written 4.6 years ago by
english.server
▴ 300
2
votes
5
replies
8.7k
views
Error in loadNamespace(name) : there is no package called ‘shiny’
MetaQc
R
R-studio
Geodatasets
MetaOmics
4.6 years ago by
xxxxxxxx
▴ 20
8
votes
3
replies
2.0k
views
Getting libType without running quantification with Salmon
strandness
salmon
rnaseq
python
strand
updated 4.6 years ago by
Rob
7.2k • written 4.6 years ago by
compuTE
▴ 140
0
votes
2
replies
916
views
Genome search on FTP NCBI
NCBI
4.6 years ago by
Debut
▴ 20
7
votes
12
replies
2.8k
views
Failing to run tblastn
tblstn
blast
updated 4.6 years ago by
GenoMax
154k • written 4.6 years ago by
langziv
▴ 70
0
votes
0
replies
684
views
Snakemake only reads the target rule and not the other rules
Snakemake
4.6 years ago by
rudylu.monica
• 0
0
votes
2
replies
1.2k
views
How to do damage calibration after vg map
vgtool
vg
PMD
aDNA
4.6 years ago by
puddingmeow516
▴ 10
0
votes
0
replies
892
views
Why ABSOLUTE calculate CCF=NA?
ABSOLUTE
4.6 years ago by
Laven9
• 0
1
vote
1
reply
1.2k
views
Detecting Human Contamination in Low Coverage NGS sample
verifybamid
CalculateContamination
4.6 years ago by
igorm
▴ 20
2
votes
3
replies
1.5k
views
Is there a way to include not conda package/programs to snakemake environment?
Non-Conda_packages
Snakemake
4.6 years ago by
lmlukoseviciute
▴ 60
122,202 results • Page
669 of 2445
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Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
Arup Ghosh
3.5k
The barcode files with 24nt read length W71_LUNGrep2_S6_L001_R3_001.fastq.gz and W71_LUNGrep2_S6_L002_R3_001.fastq.gz should be the R2.
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154k
Each database has their own method of annotation/validation. Depending on resources available there may be a lag between the databases in t…
Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
Wu-Sheng Zhang
• 0
Hi @arup , thank you very much for your suggestions, and here are the results -- they seems correct. May I have your suggestions? Thank you…
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding
by
samuel.a.odonnell
▴ 640
I don't believe merqury ignores softmasked (lower case) nucleotides so I don't think that is the case. From what it sounds like, during th…
Comment: ID unifiying across different datasets
by
zizigolu
★ 4.4k
Thanks a lot to be helpful I’m trying to build a complete `UniProtID` to `GeneSymbol` lookup table and I’m running into a wall. I’ve alrea…
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴ 20
thanks for the quick reply. i posted the screenshot. gatk-internally, there is still the difference using -ERC or not, priot is getting …
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴ 20
here the igv view. showing the histogram for all samples plus the reads for one: ![enter image description here][1] and expanded view of …
Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
Arup Ghosh
3.5k
Check the read lengths to make sure the files are correct.
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
Pierre Lindenbaum
166k
> Any suggestions or help you could share please, show us an IGV screenshot of the position GATK realign the reads locally, discards read…
Comment: Can i use orthofinder for small protein datasets and not full proteome?
by
alexandrakortsi
• 0
By sequence. Thank you for your response!
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding
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xinguok794
▴ 10
Thank you for your reply! Unfortunately, despite running YAHS with `--no-contig-ec`, the QV value of the resulting FASTA file did not impro…
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by
Kent
▴ 30
Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
Comment: Midpoint rooting IQTREE newick file moves node support around
by
Luca Arbore
▴ 10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets
by
GenoMax
154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets
by
DrSmad
▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
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