Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
121,894 results • Page
669 of 2438
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
1.9k
views
Job:
Group Leader Computational Cancer Biology - VIB-KU Leuven, Belgium
vib
groupleader
cancer
biology
computational
4.4 years ago by
leen.notebaert
• 0
0
votes
4
replies
1.6k
views
sequence similarity
blast
linux
fasta
updated 4.4 years ago by
Joe
22k • written 4.4 years ago by
lorenzinip
• 0
0
votes
3
replies
3.5k
views
Tassel5v2 vcf file with 'N' in reference and alternate allele
Tassel5v2
SNPcalling
GBS
updated 4.4 years ago by
Lindsay
• 0 • written 5.9 years ago by
Tm
★ 1.1k
0
votes
0
replies
694
views
Calculate accuracy for a Cox model in R
accuracy
cox
prediction
survival
R
4.4 years ago by
nolwenn
▴ 10
0
votes
0
replies
698
views
News:
Online Training - Microbial Metabarcoding - 4-8 October
MicrobialEcology
metabarcoding
updated 4.2 years ago by
Ram
45k • written 4.4 years ago by
Physalia-courses
★ 2.6k
1
vote
2
replies
1.4k
views
DEG list turn into keggscape
Cytoscape
RNA-Sequencing
4.4 years ago by
ashwing.kofficial
▴ 10
0
votes
5
replies
2.6k
views
How to calculate bam coverage apart from Qualimap?
bam
qualimap
coverage
4.4 years ago by
marongiu.luigi
▴ 760
0
votes
0
replies
830
views
Interpreting partial dependence plots
machinelearning
caret
partialdependenceplot
pdp
R
4.4 years ago by
fana
▴ 40
1
vote
1
reply
1.6k
views
Do I need to assume differences in coverage profile when I compare the first reads from paired end data with single end read data?
single-end
paired-end
sequencing
mapping
coverage
updated 4.4 years ago by
GenoMax
153k • written 4.4 years ago by
corinna.ernst
• 0
5
votes
8
replies
2.7k
views
Loading PCA - different value depending on the package used
factormineR
PCAtools
pca
prcomp
loadings
updated 4.4 years ago by
Kevin Blighe
89k • written 4.4 years ago by
camillab.
▴ 160
0
votes
3
replies
1.5k
views
Gigabase Clarification (Same as Gigobyte?)
genomics
4.4 years ago by
joe_genome
▴ 70
1
vote
4
replies
2.2k
views
Create Mutational signature plot from vcf file.
R
python
mutational
4.4 years ago by
nhaus
▴ 420
2
votes
1
reply
1.9k
views
Why bamToFastq returns empty fastq files?
bamToFastq
error
bam
fastq
updated 4.4 years ago by
ATpoint
89k • written 4.4 years ago by
marongiu.luigi
▴ 760
0
votes
2
replies
902
views
16S Barcoding long and short sequences return different BLAST results
barcoding
16S
4.4 years ago by
robert.murphy
▴ 110
0
votes
0
replies
943
views
how to sort out regions with corresponding scores using computematrix?
computematrix
deeptools
plotheatmap
4.4 years ago by
jiekwo1
• 0
0
votes
0
replies
981
views
Correct steps to perform a majority consensus phylogeny in RaxML
phylogeny
raxml
maximum-likelihood
bootstrap
4.4 years ago by
ddh8602
• 0
24
votes
14
replies
7.1k
views
6 follow
How To Generate Dna K-Mers Of A Given Length In C?
c
programming
updated 4.4 years ago by
Ram
45k • written 13.6 years ago by
User 4000
▴ 50
0
votes
0
replies
621
views
should I scale a MASH matrix ?
scale
MASH
4.4 years ago by
v.berriosfarias
▴ 140
2
votes
1
reply
1.1k
views
Independent Filter returns null value with attr(DESeq2Res, 'filterThreshold')
DESeq2
Filtering
updated 4.4 years ago by
ATpoint
89k • written 4.4 years ago by
Kevin
▴ 70
0
votes
3
replies
1.4k
views
Transcript enrichment in Illumina RNAseq
enrichment
transcriptomics
illumina
rnaseq
4.4 years ago by
compuTE
▴ 140
0
votes
2
replies
905
views
Help with MrBayes parameters
Mrbayes
updated 4.4 years ago by
Mensur Dlakic
★ 30k • written 4.4 years ago by
Matthew Aaron
• 0
26
votes
2
replies
7.4k
views
Tutorial:
Extracting genomic feature sequences from GTF/GFF files with AGAT
extract
GTF
GFF
sequence
updated 3.0 years ago by
eggrandio
▴ 40 • written 4.4 years ago by
Juke34
9.3k
4
votes
4
replies
4.6k
views
Understanding the ColData Matrix
RNA-SEQ
R
Micheal_Love
DESEQ2
updated 4.4 years ago by
Friederike
9.0k • written 4.4 years ago by
raisamathenge
▴ 30
13
votes
14
replies
9.1k
views
9 follow
Tool:
open-cravat: variant annotation tool
open-cravat
updated 2.3 years ago by
Ram
45k • written 6.8 years ago by
slcrick
▴ 260
2
votes
7
replies
6.4k
views
Samtools view error:
bowtie
Samtools
updated 2.5 years ago by
Ram
45k • written 4.9 years ago by
jaqx008
▴ 110
1
vote
1
reply
3.5k
views
sam_hrecs_error Malformed key:value pair
alignment
updated 4.4 years ago by
GenoMax
153k • written 5.7 years ago by
Ric
▴ 440
1
vote
1
reply
1.6k
views
Reactome website gene expression analysis
gene_expression_analysis_tool
Reactome_website
updated 4.4 years ago by
GenoMax
153k • written 4.4 years ago by
camillab.
▴ 160
0
votes
2
replies
1.3k
views
NanoString output: miRNA probe ID with with plus sign (+)
nanostring
mirna
4.4 years ago by
kinnaryshahh
• 0
6
votes
10
replies
3.7k
views
Pacbio SRA data format error
Pacbio
SRA
bax2bam
isoseq3
updated 4.4 years ago by
papodek
▴ 40 • written 4.6 years ago by
shounak.chakraborty1990
▴ 20
0
votes
0
replies
1.0k
views
Error while using pybiomart package
biomart
pybiomart
4.4 years ago by
ahmedmelmoselhy
▴ 20
0
votes
0
replies
778
views
Map LINCS perturbagen identifiers to ChEMBL identifiers?
LINCS
L1000
ChEMBL
4.4 years ago by
n.y.bell
• 0
0
votes
0
replies
1.1k
views
Bowtie2 error: skipping reads
kneaddata
bowtie02
4.4 years ago by
pdhrati02
▴ 30
7
votes
4
replies
2.0k
views
very short 'time series' bulk rna-seq, testing two conditions
rna
data
updated 4.4 years ago by
ATpoint
89k • written 4.5 years ago by
joha
▴ 10
6
votes
8
replies
2.0k
views
Joining blast hits together into single fasta sequence
sequence
genomics
blast
updated 4.4 years ago by
cpad0112
21k • written 4.4 years ago by
Wilber0x
▴ 50
0
votes
0
replies
845
views
D Prime GWAS
Linkage
GWAS
4.4 years ago by
Filago
▴ 110
0
votes
0
replies
663
views
Metabolite identification from m/z and retention time
metabolomics
R
4.4 years ago by
mm2568
• 0
0
votes
0
replies
984
views
TPM biological replicates, geometric mean
TPM
tsi
tissue
4.4 years ago by
joha
▴ 10
19
votes
9
replies
3.2k
views
8 follow
Forum:
Future of Microarrays
Microarrays
updated 4.4 years ago by
Joe
22k • written 4.4 years ago by
E
▴ 20
3
votes
2
replies
1.2k
views
Key and value parse with regex
python
regex
updated 4.4 years ago by
JC
13k • written 4.4 years ago by
enes
▴ 40
0
votes
2
replies
1.3k
views
How to use DownsampleSam quickly and efficiently with multiple PROBABILITies?
picard
downsampling
RNA-seq
BAM
4.4 years ago by
-IvanWoo-
• 0
0
votes
0
replies
982
views
differential gene expression (DGE) using TCGABiolinks
DGE
TCGA
tcgabiolinks
4.4 years ago by
peter
▴ 20
2
votes
6
replies
2.4k
views
RRBS ANNOTATION
NGS
ANNOTATION
RRBS
4.4 years ago by
GiV17
▴ 50
0
votes
4
replies
1.6k
views
Gatk bam metrics
ngs
metrics
Gatk
bam
updated 3.5 years ago by
Ram
45k • written 4.4 years ago by
Sabeen
▴ 30
1
vote
1
reply
1.6k
views
split vcf file into multiple files
WGS
vcf
bcftools
updated 4.4 years ago by
Pierre Lindenbaum
166k • written 4.4 years ago by
lz1903
▴ 10
3
votes
8
replies
2.5k
views
Convertion Of Gff3 To Gtf
gtf
gff
4.4 years ago by
daalsa98
▴ 10
59
votes
23
replies
53k
views
14 follow
Bam File: Change Chromosome Notation
samtools
bam
updated 4.3 years ago by
zx8754
12k • written 13.9 years ago by
Lisanne
▴ 160
3
votes
3
replies
1.2k
views
Phylogenetic tree of gene clusters
evolution
clusters
phylogeny
updated 4.4 years ago by
Joe
22k • written 4.4 years ago by
A_heath
▴ 170
2
votes
2
replies
9.6k
views
[E::idx_find_and_load] Could not retrieve index file for 'xxxxxsorted.bam'
rna-seq
4.4 years ago by
jenyfer
▴ 10
0
votes
2
replies
1.5k
views
NIPT related tools & software
NIPS
4.3 years ago by
smrutimayipanda
▴ 20
14
votes
3
replies
7.6k
views
TMM-Normalization
TMM
RNAseq-Normalization
3.9 years ago by
Filago
▴ 110
121,894 results • Page
669 of 2438
Recent Votes
allele frequency in VCF
Comment: Best way to do protein structure guided similarity search?
Comment: Tool 'sra_source' does not exist.
Answer: TCGA -derived Large RangeSummarizeExperient file
Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
Answer: Structural Variant identification on pangenome graphs
Answer: Stringtie de novo VS reference guided (-G)
Recent Locations •
All
United States,
1 minute ago
United States,
3 minutes ago
United States,
5 minutes ago
United States,
6 minutes ago
Hanoi,Viet Nam,
9 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
11 minutes ago
United States,
19 minutes ago
Recent Awards •
All
Popular Question
to
danielpintard
▴ 10
Popular Question
to
Madiha
▴ 10
Popular Question
to
Picasa
▴ 690
Scholar
to
shelkmike
★ 1.8k
Popular Question
to
Atefeh
• 0
Popular Question
to
RelativeOptics
▴ 40
Great Question
to
Sam
• 0
Recent Replies
Comment: Different UMAP for batch correction in R and Pytho
by
GenoMax
153k
Use this tutorial for how to upload images: https://www.biostars.org/p/309884/#346553 Only difference is instead of using an external imag…
Answer: GTEx sQTL v8 – annotation version used?
by
GenoMax
153k
If you click over to the `Reference` tab ( https://gtexportal.org/home/downloads/adult-gtex/reference ), it looks like they used GENCODE v.…
Comment: How to Identify Conserved 21-mers Across TE Insertions in Drosophila?
by
manikin_python9f
▴ 20
Since they are transposons, we don’t know the exact location of them. We know their sequence of insertions from repeatmasker in dm6 genome.…
Comment: Tool 'sra_source' does not exist.
by
Atefeh
• 0
Thanks for your kindness.
Comment: TCGA -derived Large RangeSummarizeExperient file
by
Tom
• 0
It works well. Thank you very much ! @atpoint
Answer: TCGA -derived Large RangeSummarizeExperient file
by
ATpoint
89k
For the end user these `DFrames` are just regular data.frames, so you can do `col_data[,c("barcode", "patient", "whatever")]` or just do `a…
Comment: magpurify errors
by
shevch2009
▴ 20
I have checked with my eyes, and I didn't find it, I have only one contig that starts with k127_458 .... but the name is different - k127_4…
Comment: Yeast reference-based genome assembly
by
Michael
56k
So, you aren't sure about the exact species? Then you might want to be careful with reference-based assembly in general. I recommend the fo…
Comment: Structural Variant identification on pangenome graphs
by
Panos
★ 1.8k
That's a very comprehensive list! Thanks for sharing! `minigraph` better suits my needs because all I need is SVs for my genomes. As far a…
Comment: Yeast reference-based genome assembly
by
amy967107
• 0
I have ~2.01 Gb of ONT data and the target genome is ~20–23 Mb (90–100× coverage). My ONT read N50 is ~3.8 kb, so contiguity may be limited…
Comment: Yeast reference-based genome assembly
by
amy967107
• 0
This is a yeast strain (probably Rhodotorula spp.) and I'm trying to assemble the entire genome from nanopore reads using a reference-based…
Answer: Yeast reference-based genome assembly
by
Michael
56k
The new [hifiassm ONT][1] may be all you need for getting a good assembly. I would not recommend LRSDAY, except for its annotation part (wh…
Comment: magpurify errors
by
Mensur Dlakic
★ 30k
By the way, these errors are not unique. If you look through the `magpurify` GitHub issues, both types have been reported already. - https…
Comment: magpurify errors
by
Mensur Dlakic
★ 30k
There is absolutely no chance that a contig labeled `k127_4584534` doesn't exist in your fasta files. These names are not made up out of th…
Comment: magpurify errors
by
shevch2009
▴ 20
Strange but there are no such headers or contig names in my fasta files
Traffic: 4516 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6