2
votes
2
replies
584
views
4
votes
4
replies
705
views
updated 8 weeks ago by
Mensur Dlakic
★
30k
•
written 8 weeks ago by
nuorain
▴
40
6
votes
7
replies
1.2k
views
7 weeks ago by
Assa Yeroslaviz
★
1.9k
1
vote
1
reply
672
views
0
votes
0
replies
320
views
8 weeks ago by
Physalia-courses
★
2.7k
0
votes
4
replies
621
views
updated 8 weeks ago by
GenoMax
154k
•
written 8 weeks ago by
marongiu.luigi
▴
770
1
vote
10
replies
3.3k
views
updated 4.4 years ago by
German.M.Demidov
★
3.0k
•
written 4.4 years ago by
Ishak
▴
20
0
votes
1
reply
411
views
0
votes
2
replies
537
views
Forum:
Help with Ideathon
8 weeks ago by
V K
•
0
2
votes
2
replies
521
views
8 weeks ago by
Picasa
▴
700
0
votes
1
reply
596
views
updated 8 weeks ago by
GenoMax
154k
•
written 8 weeks ago by
simonlydialm
•
0
0
votes
0
replies
328
views
8 weeks ago by
Physalia-courses
★
2.7k
3
votes
1
reply
821
views
0
votes
0
replies
419
views
updated 8 weeks ago by
colindaven
8.1k
•
written 8 weeks ago by
Pablo
•
0
1
vote
0
replies
421
views
8 weeks ago by
Istvan Albert
103k
3
votes
1
reply
995
views
0
votes
0
replies
846
views
9 weeks ago by
Physalia-courses
★
2.7k
1
vote
0
replies
791
views
0
votes
4
replies
2.5k
views
9 weeks ago by
Tripfantasy
•
0
2
votes
1
reply
1.4k
views
1
vote
0
replies
936
views
9 weeks ago by
William
▴
10
0
votes
1
reply
1.1k
views
3
votes
1
reply
1.6k
views
1
vote
0
replies
1.2k
views
3
votes
6
replies
6.2k
views
9 weeks ago by
saamhasan55
▴
30
2
votes
2
replies
1.9k
views
0
votes
0
replies
1.1k
views
9 weeks ago by
Physalia-courses
★
2.7k
0
votes
2
replies
2.2k
views
updated 9 weeks ago by
andres.firrincieli
3.9k
•
written 9 weeks ago by
moreDanOne
•
0
2
votes
2
replies
2.5k
views
updated 9 weeks ago by
lieven.sterck
16k
•
written 9 weeks ago by
curious
▴
900
17
votes
5
replies
4.5k
views
1
vote
2
replies
3.0k
views
2
votes
3
replies
6.0k
views
updated 9 weeks ago by
Jeremy Leipzig
23k
•
written 9 weeks ago by
6bbfc7a8
▴
10
1
vote
6
replies
6.3k
views
updated 25 days ago by
Gordon Smyth
★
8.6k
•
written 9 weeks ago by
Fatemeh
▴
50
8
votes
4
replies
6.5k
views
9 weeks ago by
Upesh
▴
20
0
votes
0
replies
3.2k
views
4
votes
5
replies
6.7k
views
3
votes
5
replies
5.5k
views
3
votes
12
replies
6.5k
views
3
votes
2
replies
4.6k
views
2
votes
2
replies
4.6k
views
0
votes
4
replies
5.6k
views
0
votes
0
replies
4.4k
views
0
votes
2
replies
5.6k
views
updated 10 weeks ago by
Joe
22k
•
written 10 weeks ago by
kelpotus22
•
0
3
votes
1
reply
4.7k
views
updated 10 weeks ago by
Pierre Lindenbaum
166k
•
written 10 weeks ago by
Donald
•
0
6
votes
9
replies
8.0k
views
0
votes
0
replies
4.8k
views
10 weeks ago by
Physalia-courses
★
2.7k
8
votes
9
replies
20k
views
8 follow
7
votes
3
replies
9.4k
views
0
votes
1
reply
7.0k
views
updated 10 weeks ago by
Joe
22k
•
written 10 weeks ago by
marongiu.luigi
▴
770
Recent Votes
Recent Locations •
All
UCLA, 1 minute ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 5 minutes ago
United States, 8 minutes ago
United States, 25 minutes ago
Whitefish, MT, 25 minutes ago
Germany, 26 minutes ago
United States, 28 minutes ago
Recent Awards •
All
Popular Question to
mete.han.celebi
•
0
Popular Question to
s
•
0
Popular Question to
S
•
0
Popular Question to
ramiro.barrantes
▴
60
Popular Question to
swbarnes2
15k
Teacher to
jared.andrews07
★
19k
Recent Replies
Answer: Problems in Molecular Docking in Autodock vina
by
Anonsirs
•
0
Try to re run the command by first starting meeko and rdkit . to convert PDB files to PDQT files. It can help vina recognize the atom . a…
Comment: "sortmerna" quitting early--is this is a memory issue?
by
Andrew
•
0
Do you mean the maximum % RAM usage it reaches right before the moment it quits? As I said, the computer has 16 GB RAM, and the run fails w…
Comment: Chip-seq analysis Diffbind
by
Irene
▴
10
Thank you very much for always answering my doubts and questions. I truly value and appreciate it because it helps me understand the result…
Comment: Minimap2 segfaults when mapping Nanopore reads to a very large reference databas
by
firefox91
▴
10
Many thanks !
Answer: Re-assembling old RNA-seq reads vs. using an existing transcriptome assembly
by
GenoMax
154k
> I have access to both the raw reads and the previously assembled transcriptome submitted to TSA.
and
> I am trying to determine wheth…
Answer: Re-assembling old RNA-seq reads vs. using an existing transcriptome assembly
by
dthorbur
★
3.2k
There are a few factors to consider:
**The quality of the existing reference.**
If there is a high quality chromosome level assembly,…
Comment: "sortmerna" quitting early--is this is a memory issue?
by
colindaven
8.1k
Pls add the output and your system (especially RAM), no one here can guess.
Answer: Power calculations for differentially methylated DNA samples from sequencing
by
colindaven
8.1k
There are software packages for power analysis such as https://academic.oup.com/bioinformaticsadvances/article/5/1/vbaf150/8173951.
Comment: Data integration single cell using Harmony
by
Arup Ghosh
3.5k
Run QC for each sample separately, then merge run SCTransform, PCA, then Harmony, UMAP, FindNeighbors and FindClusters.
Comment: Data integration single cell using Harmony
by
_deb
•
0
Thank you for the quick answer.
I still have a doubt. It would be better to pre-process each sample separately (*filtering, SCTransform…
Comment: Issue while running Kenddata.
by
rana.elromh
•
0
I checked the memory before executing this command. I made a bash script on Ubuntu to run it on 15 folders. But, this problem happened in f…
Comment: Prokka output genes clusterization by function
by
Mensur Dlakic
★
30k
Many proteins have multiple domains, and are correctly classified with multiple KO numbers. That's not a bug in `kofam_scan` but rather a r…
Comment: mapping sequences on specific region of bacteria genome
by
samuel.a.odonnell
▴
650
If you want to visualise the mapping; take a look at using IGV. It just requires the genome you used to map the reads and the BAM output (n…
Comment: Prokka output genes clusterization by function
by
shevch2009
▴
20
Thanks, I had completely forgotten that METABOLIC works with protein sequences. That will work :)
I was just trying to figure out how peop…
Answer: Prokka output genes clusterization by function
by
Mensur Dlakic
★
30k
It is easy to install `kofam_scan` and get the output:
https://github.com/takaram/kofam_scan
What is the impediment to using METABOLI…
Traffic: 3246 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6