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121,931 results • Page
99 of 2439
Sort: Rank
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Votes
Replies
0
votes
0
replies
447
views
Centrifuge Classifying Reads, but the Report is Empty
metagenomics
centrifuge
updated 15 months ago by
GenoMax
154k • written 15 months ago by
echolley
▴ 20
0
votes
3
replies
1.8k
views
Seeking Tutorial for Downloading TCGA Data with TCGAbiolinks and Converting to TPM
tpm
tcga
updated 15 months ago by
Ming Tommy Tang
★ 4.7k • written 15 months ago by
Znow
▴ 20
1
vote
11
replies
5.5k
views
How to download a file from zenodo link without leaving terminal?
axel
linux
curl
wget
updated 15 months ago by
GenoMax
154k • written 15 months ago by
SlowSD
• 0
0
votes
3
replies
879
views
how to measure significance of improvement between two methods during modeling
spearman
correlation
updated 15 months ago by
Jean-Karim Heriche
27k • written 15 months ago by
rheab1230
▴ 150
0
votes
1
reply
495
views
How to Predict Drug Targets Using Single-Sample RNA-Seq Data?
Drug
Target
RNA-Seq
updated 15 months ago by
DGTool
▴ 290 • written 15 months ago by
Musab
• 0
1
vote
1
reply
533
views
Estimate large insertions size in WGS data.
NGS
Diagnostic
SV
WGS
updated 15 months ago by
GenoMax
154k • written 15 months ago by
meetmet
▴ 10
0
votes
2
replies
753
views
.tar files Microarray
Microarray
15 months ago by
Nona
▴ 90
1
vote
4
replies
1.3k
views
vg autoindex memory issues Signal 6 has occured
vg
updated 10 months ago by
Jordan M Eizenga
▴ 760 • written 15 months ago by
l.dammer
• 0
0
votes
0
replies
313
views
SUPPA, Junctions Dealing
SUPPA
Junctions
15 months ago by
smanzano250800
• 0
5
votes
3
replies
6.9k
views
bcftools to remove non-variants sites
bcftools
SNP
vcftools
vcf
filter
updated 15 months ago by
zx8754
12k • written 5.0 years ago by
shiy05
▴ 30
2
votes
6
replies
1.1k
views
Map genome to a particular region
mapping
Genome
updated 15 months ago by
GenoMax
154k • written 15 months ago by
JohnOak
• 0
2
votes
1
reply
914
views
Why there are only two .fastq files in scATAC-seq raw data?
scATAC-seq
cellranger
10X
updated 15 months ago by
Ram
45k • written 15 months ago by
浩然
• 0
4
votes
3
replies
2.9k
views
How to measure pairwise genetic distance in all samples of a VCF file
pop-gen
pairwise-distance
VCF
updated 15 months ago by
hewm2008
▴ 50 • written 2.9 years ago by
LDT
▴ 340
2
votes
6
replies
1.5k
views
Removing batch effect in time-series data
batch-effect
updated 14 months ago by
Ram
45k • written 15 months ago by
Álvaro
• 0
3
votes
3
replies
1.1k
views
Interproscan
configuration
install
interproscan
exist
not
updated 15 months ago by
GenoMax
154k • written 15 months ago by
MaxMin
▴ 10
3
votes
8
replies
1.5k
views
BCFtools not calling variant, despite adequate coverage
bcftools
variant
calling
updated 15 months ago by
GenoMax
154k • written 15 months ago by
mpiersonsmela
▴ 20
3
votes
4
replies
1.3k
views
New versions of the same transcripts ID may have different exons coordinates??
RefSeq
updated 15 months ago by
i.sudbery
22k • written 15 months ago by
ManuelDB
▴ 110
1
vote
1
reply
505
views
How can I get the total list of RefSeq transcripts?
RefSeq
updated 15 months ago by
GenoMax
154k • written 15 months ago by
ManuelDB
▴ 110
4
votes
13
replies
3.9k
views
8 follow
Failed to download data from EBI BioStudies with ascp/Aspera
aspera
EBI
updated 14 months ago by
Aster
• 0 • written 17 months ago by
biock
▴ 70
0
votes
1
reply
457
views
Problem in input data loading in Structure
Structure-Pritchard
updated 15 months ago by
Mensur Dlakic
★ 30k • written 15 months ago by
RN
• 0
0
votes
0
replies
402
views
running multiple GEO Dataset projects
GEO
updated 15 months ago by
Ram
45k • written 15 months ago by
analyst
▴ 70
0
votes
0
replies
585
views
MEME PWM format - what is the meaning of nsites?
motif
sequence
meme-suite
pwm
meme
15 months ago by
mcsimenc
▴ 30
2
votes
2
replies
1.3k
views
Example human WGS fastq data
WGS
updated 15 months ago by
Ming Tommy Tang
★ 4.7k • written 15 months ago by
ramiro.barrantes
▴ 60
2
votes
0
replies
1.1k
views
Tutorial:
Seurat Object Explained: Beginner's Guide and Demo
scRNA-seq
Seurat
single-cell
updated 15 months ago by
Ram
45k • written 15 months ago by
Ming Tommy Tang
★ 4.7k
0
votes
1
reply
986
views
Empty txt file as an output of "seqkit stats" for multiple fastq files
NGS
Linux
updated 15 months ago by
shenwei356
8.7k • written 15 months ago by
Mohamed Samir
▴ 30
1
vote
4
replies
1.1k
views
how linearize nucleotide lines in axt file
axt
updated 15 months ago by
dariober
15k • written 15 months ago by
resug
▴ 40
0
votes
0
replies
429
views
How to Merge Single Chromosome Genomic Annotations
BRAKER3
genome
annotation
15 months ago by
Kinoppy
• 0
7
votes
6
replies
2.7k
views
Alignment tool for very short reads (25bp)
mapper
aligner
bwa
alignment
bowtie2
updated 15 months ago by
Ming Tommy Tang
★ 4.7k • written 15 months ago by
Anisur Rahman
▴ 80
0
votes
0
replies
1.2k
views
Job:
PhD-position in bioinformatics / computational biology (75% E13) at Ruhr-University Bochum
NGS
aging
Epigenomics
mole-rat
omics
15 months ago by
Arne.Sahm
• 0
2
votes
9
replies
2.0k
views
Help aligning Nanopore Long Read RNA seqs
rna-seq
long-read
minimap2
updated 15 months ago by
GenoMax
154k • written 15 months ago by
sewaw37819
• 0
0
votes
2
replies
913
views
Job:
postdoc/master's position AI ML
python
Neuroscience
machine-learning
updated 15 months ago by
colindaven
8.0k • written 15 months ago by
sivan.kinreich
• 0
3
votes
4
replies
1.5k
views
Is T2T genome a "alternate assembly"
T2T
grch38
alternate_assembly
ref_genome
updated 15 months ago by
colindaven
8.0k • written 15 months ago by
Daniel
▴ 10
4
votes
2
replies
890
views
edgeR batch effect model matrix sanity check
R
edgeR
RNA-seq
batch-effect
15 months ago by
kmyers2
▴ 90
0
votes
4
replies
1.1k
views
minimap2 U to T conversion
minimap2
updated 15 months ago by
GenoMax
154k • written 15 months ago by
kewoka9286
• 0
4
votes
13
replies
2.4k
views
BBMap Excess Fold Coverage
bbmap
updated 14 months ago by
GenoMax
154k • written 15 months ago by
shacon
• 0
0
votes
1
reply
682
views
Jellyfish docker image error with bam files
jellyfish
docker
kmers
updated 15 months ago by
bhumm
▴ 200 • written 15 months ago by
enee
▴ 20
3
votes
4
replies
1.5k
views
Overrepresented sequence in reverse read
FastQC
Genomics
Trimmomatic
Sequencing
ATAC
15 months ago by
Jaskaran Singh
• 0
0
votes
0
replies
361
views
Testing difference in median of clinical variabls in Rna-seq data
clinical-features
RNA-seq
updated 15 months ago by
Ram
45k • written 15 months ago by
Znow
▴ 20
2
votes
1
reply
601
views
Split the fastqc file base on barcode
fastq
updated 15 months ago by
GenoMax
154k • written 15 months ago by
QX
▴ 80
6
votes
7
replies
1.3k
views
Illumina Raw Data Multiple Read FIles Discussion
novaseqX
pairedend
illumina
fungus
15 months ago by
SomeOne
▴ 240
9
votes
6
replies
3.0k
views
Intuitive Graphical Interface for Executing nf-core Pipelines
GUI
genomics
ngs
updated 15 months ago by
Matthias Zepper
5.1k • written 15 months ago by
Nour-eddine
▴ 70
0
votes
0
replies
374
views
Removing inherent biomarker sensor signals from the actual sensor readings
python
data
noise
15 months ago by
bluecipher
• 0
0
votes
2
replies
1.8k
views
How to use topGO tool for enrichment analysis of non-model organisms
topGO
updated 15 months ago by
wdlin
• 0 • written 19 months ago by
otieno43
▴ 40
3
votes
4
replies
1.2k
views
RSEM getting TPM from STAR alignment
TPM
STAR
RNAseq
RSEM
15 months ago by
Emily
▴ 20
0
votes
0
replies
426
views
Help : Run EVE for CAMK2A.
VEP
EVE
15 months ago by
Meto
• 0
2
votes
3
replies
791
views
Is TMM apropriated for Welch test between gender?
welch-test
TMM
updated 15 months ago by
Ram
45k • written 15 months ago by
Znow
▴ 20
2
votes
5
replies
1.2k
views
SPAdes error when trying to specify options for path
spades
15 months ago by
AINUR FATIN BINTI MAZRI
• 0
0
votes
1
reply
790
views
Poor alignment post-SortMeRNA (rRNA removal)
STAR
rRNA
RNAseq
SortMeRNA
updated 15 months ago by
andres.firrincieli
3.9k • written 15 months ago by
Fossil
▴ 30
0
votes
1
reply
744
views
How to extract gene_counts_length_scaled matrix from either raw count matrix or SE object
recount3
salmon
gtex
tximport
deseq2
updated 15 months ago by
ATpoint
89k • written 15 months ago by
Aditya
• 0
1
vote
2
replies
1.4k
views
how to see Pacbio reads in IGV
pbmm2
pbindex
Pacbio
long-reads
revio
updated 15 months ago by
Pierre Lindenbaum
166k • written 15 months ago by
María José
▴ 10
121,931 results • Page
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Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Looking to learn practical bioinformatics
Looking to learn practical bioinformatics
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
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Recent Replies
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
▴ 20
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1] [1]: https://www.langmead-lab.org/…
Comment: Looking to learn practical bioinformatics
by
GenoMax
154k
This (or a variation) question is asked every so often. You may want to take a look at these past threads and the discussions in there to g…
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
GenoMax
154k
It is an investment in time and will ensure that there is no extraneous sequence is present, if you choose to do scanning/trimming. That …
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