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Recent Replies
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Thank you @genomax. Heng Li's blog was helpful.
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You mean joining and then obtaining the SNPs that are only present in my resistant treatment?
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Hi!
- nohup is for avoiding internet disconnections on the server I work as is my understanding
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What's type of data is this? e.g. chip-seq?
That seems like a high duplication rate. Is this data enriched for telomere sequences?
`-B` a…
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1) using `nohup` is most always a bad idea . Learn screen/tmux, learn make/nextflow/snakemake
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call all your bams in one HaplotypeCaller call (= "joint calling vcf" )
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I think I answered all of that already, also, read the manual to get code right. I am not planning to reiterate what I said already.
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Thank you for the helpful explanation, I really appreciate the clarity.
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It's called `duplicateCorrelation` ;-)
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This is an example of what the edgeR manual refers to as a "with and between" design. See page 44 of the edgeR user's guide here:
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