Limit : all time
all time today this week this month this year
1,000 results • Page 1 of 20
Sort: Rank
Rank Views Votes Replies
0
votes
0
replies
8
views
DEgs RNAseq
RNAseq
43 minutes ago by Juan • 0
0
votes
2
replies
190
views
Counting intronic reads in bulk RNA-seq
rna-seq
updated 2 hours ago by 13k • written 1 day ago by ▴ 300
0
votes
2
replies
156
views
Single cell chemistry
cell single chemistry
updated 3 hours ago by 13k • written 15 hours ago by • 0
0
votes
0
replies
32
views
Different alternatives for downloading GWAS summary statistics en masse
GWAS download data
3 hours ago by Vincent Laufer ★ 2.8k
0
votes
6
replies
305
views
Why are some WES VCFs larger than others?
WES sequencing genomics NGS exome
updated 7 hours ago by ★ 2.8k • written 1 day ago by ▴ 80
0
votes
4
replies
177
views
SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC.
snakemake
5 hours ago by Dhatri Badri • 0
0
votes
0
replies
60
views
problem of Global Biobank Meta-analysis Initiative
GWAS
10 hours ago by 1362321710 • 0
743
votes
162
replies
113k
views
101 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 4 weeks ago by 1.8k • written 6.5 years ago by 98k
0
votes
1
reply
95
views
DownsampleSam
picard DownsampleSam
updated 10 hours ago by 154k • written 10 hours ago by • 0
0
votes
2
replies
158
views
ABySS genome assembler
ABySS genome k-mers assembly
11 hours ago by npavliukovec • 0
0
votes
0
replies
79
views
Error while running Megahit
Megahit
updated 14 hours ago by 129k • written 19 hours ago by • 0
0
votes
1
reply
113
views
How to deal with duplicated gene IDs in TCGA RNA expression data?
TCGA Expression mRNA
updated 4 hours ago by ★ 2.8k • written 22 hours ago by ▴ 30
1
vote
5
replies
262
views
Cutadapt error: too many parameters.
cutadapt parallel bash
updated 1 day ago by 129k • written 1 day ago by • 0
0
votes
0
replies
110
views
corresponding clinical data from TCGA database of PSI values for CCA AS events in spliceseq database
TCGA
1 day ago by dima • 0
1
vote
0
replies
166
views
How to assess which cell population is most affected by treatmant in single cell rna seq data?
transcriptomics single-cell RNA DEG
1 day ago by abbas89 ▴ 10
0
votes
3
replies
288
views
metric informing about the similarity of gene lists in OrderedList
orderedlist
updated 1 day ago by ★ 2.8k • written 2 days ago by • 0
18
votes
6
replies
6.4k
views
VCF header line counting
vcf header
updated 1 day ago by ▴ 530 • written 8.3 years ago by ▴ 40
0
votes
1
reply
132
views
How extract specific SNP position from the bed file-Bedtools
bedtools for Help
updated 1 day ago by 129k • written 1 day ago by • 0
0
votes
0
replies
365
views
Can I send my PyMol results to a web-page as a result for a submitted query? If not, how can I get a 3d render of a protein as a result for a user su…
protein-structure pymol protein pdb python
1 day ago by Aatif Hashmi • 0
2
votes
5
replies
366
views
Design matrix to remove technical replicate effect
edgeR
1 day ago by ARD ▴ 10
0
votes
1
reply
214
views
Deferentially expressed gene with high log2foldchange by DESeq2; but not meaningful at the individual level
DESeq2 RNA-seq DGEA
updated 1 day ago by ★ 2.8k • written 1 day ago by ▴ 10
1
vote
2
replies
158
views
Abyss taking a Long time to run
abyss assembly genome fastq
1 day ago by Maliha ▴ 20
0
votes
2
replies
185
views
Import or read Snapgene .dna files into R
R .dna snapgene
1 day ago by eggrandio ▴ 40
2
votes
2
replies
180
views
Segmentation fault Biopython pairwise alignment
biopython alignment
updated 1 day ago by 98k • written 1 day ago by ▴ 20
0
votes
3
replies
273
views
Biological replicates in RNA-seq
RNA-seq biological-replicates
updated 1 day ago by ★ 1.8k • written 2 days ago by • 0
0
votes
0
replies
87
views
BEAST Divergence time Analysis
time BEAST BEAUti divergence
1 day ago by ahmadjoyyia ▴ 10
0
votes
0
replies
102
views
Differential Gene Expression analysis in heterogeneous tissues
RNA-seq deseq2
updated 1 day ago by 39k • written 1 day ago by ▴ 70
2
votes
2
replies
239
views
Plotting heat map with significance based on multiple columns
R Python Heatmap
updated 1 day ago by 3.7k • written 2 days ago by ▴ 50
1
vote
1
reply
135
views
Issue with MiSeq Demultiplexing: Unexpected Ns in I5_Index
MiSeq Demultiplexing Sequencing
updated 1 day ago by 129k • written 1 day ago by • 0
4
votes
5
replies
436
views
bitr() doesn't recognize the keys I've entered as valid gene symbols for my organism's database ('SYMBOL').
pathway-analysis clusterProfiler
1 day ago by Medeea • 0
3
votes
2
replies
237
views
vg: Mapping fewer reads to a genome graph than a linear reference
giraffe mapping pangenome vg
updated 13 hours ago by ▴ 470 • written 2 days ago by ▴ 20
0
votes
1
reply
151
views
Variant Annotation
Variant-Annotation VCF R
updated 1 day ago by 39k • written 1 day ago by • 0
0
votes
0
replies
115
views
News: course - Advanced Python programming
Programming DeepLearning Python MachineLearning
1 day ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
154
views
too many zeros in 16S rRNA amplicon sequencing data
16S rRNA
updated 9 hours ago by 3.3k • written 1 day ago by ▴ 180
0
votes
0
replies
131
views
Job: Looking for a internship or master's course in Bioinformatics
masters internship career
updated 1 day ago by 39k • written 1 day ago by • 0
0
votes
1
reply
172
views
Seurat 'DoHeatmap()' hierarchical clustering
DoHeatmap Seurat clustering
updated 1 day ago by ▴ 940 • written 2 days ago by • 0
3
votes
2
replies
230
views
Bioinformatics in drug designing
pharmaceutical
1 day ago by nishimalhotra2612 ▴ 40
0
votes
1
reply
139
views
Finding Kinetic Parameters from Western Blot images
image-processing western-blot
updated 1 day ago by 39k • written 1 day ago by • 0
3
votes
1
reply
3.2k
views
How To Interpret The Numbers In The Cnvnator Genotype Output
genotyping
updated 1 day ago by • 0 • written 10.4 years ago by ▴ 150
0
votes
0
replies
118
views
Chipseq data peak calling issue
Bioinformatics sequencing chipseq RNA data
1 day ago by Adyasha • 0
0
votes
2
replies
241
views
NanoSim Error "Please specify the training reads and its reference genome!"
NanoSim RNA-seq LongRead
1 day ago by akainth • 0
3
votes
4
replies
289
views
rose identifies super enhancers, how to output PDF files
PDF rose
updated 2 days ago by 39k • written 2 days ago by • 0
0
votes
0
replies
120
views
Assigned taxonomy after dada2 only "NAs" or "Mitochondria"
16S dada2 DECIPHER ITS taxonomy
2 days ago by mattze731 • 0
0
votes
0
replies
114
views
I want to set the null hypothesis for the test of genetic correlation to rg=1.
correlation LDSC genetic
2 days ago by Apprentice ▴ 130
3
votes
2
replies
199
views
How to download iGenomes from S3
iGenome
2 days ago by Chris ▴ 100
2
votes
3
replies
233
views
sambamba-depth: All files must be coordinate-sorted error?
read linux sambamba
updated 2 days ago by 154k • written 2 days ago by ▴ 10
2
votes
6
replies
608
views
Prokka installation - compilation aborted
database Prokka compilation indexing
2 days ago by eimanpharmacist ▴ 20
0
votes
2
replies
233
views
About inconsistent cell counts per samples obtained in small nuclear RNAseq data.
Seurat QC Single-Cell
1 day ago by bk11 ▴ 60
0
votes
3
replies
691
views
samtools installed but error message: Library not loaded: @rpath/libcrypto.1.0.0.dylib
Monterey samtools macOS
updated 2 days ago by 129k • written 13 months ago by • 0
4
votes
6
replies
603
views
samtools install error
samtools
updated 2 days ago by • 0 • written 4 weeks ago by ▴ 10
1,000 results • Page 1 of 20
Recent Votes
Answer: IGV displays genomic coordinates in a 1-based system or 0-based?
RNAseq expression data log2 transformed has negative values.
Samtools: "Too Many Open Files"
Filtering bad quality probes in illumina microarray data
gene filtering for agilent microarray using Limma
A: Identification Of Significant Differences Between Phylogentic Trees Using Distan
A: How to filter vcf file on minimum genotype depth and quality for each sample
Recent Locations • All
United States, just now
Sweden, 13 minutes ago
Saudi Arabia, 16 minutes ago
Santiago, 17 minutes ago
China, 17 minutes ago
Unknown, 32 minutes ago
United States, 33 minutes ago
Recent Awards • All
Popular Question to Sam ▴ 150
Supporter to arsala521 ▴ 10
Teacher to Leszek 4.2k
Commentator to Gordon Smyth ★ 6.1k
Popular Question to Vincent Laufer ★ 2.8k
Popular Question to beausoleilmo ▴ 530
Popular Question to rbaranikumar • 0
Recent Replies
Answer: Counting intronic reads in bulk RNA-seq by swbarnes2 13k
Are you sure this is appropriate for bulk RNASeq? I thought intronic reads for single cell were only counted in nuclear preps.
Answer: Single cell chemistry by swbarnes2 13k
Are you sure these samples are 10x? How likey is it that the sequencing group messed up and ran the samples wrongly?
Comment: How to deal with duplicated gene IDs in TCGA RNA expression data? by Vincent Laufer ★ 2.8k
are they distinct transcript IDs but the same gene ID? can you provide any additional context?
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
that didn't work either
Answer: Why are some WES VCFs larger than others? by Vincent Laufer ★ 2.8k
Hi @kermit and prash (and others)! Nice discussion. I wanted to offer some **biological rationales** in addition to the technical reasons …
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by WouterDeCoster 47k
There is no `:` after `rule fastqc`
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
sorry that was a typo while i was copying my code! I still get the same error
Comment: too many zeros in 16S rRNA amplicon sequencing data by andres.firrincieli 3.3k
You have too many ASV (40k) and I think this is a problem related to the denoising (DADA2) of NovaSeq 6000 sequencing data. Maybe this post…
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Pierre Lindenbaum 154k
> fastq.gz". what is the dot after `fastq.gz" ` ?
Comment: DownsampleSam by Pierre Lindenbaum 154k
1) I think this is just a warning 2) there must be another error displayed 3) look at samtools view --subsample 4) don't use loops but use…
Comment: ABySS genome assembler by npavliukovec • 0
Hello, yes, I tried it, but I have to do my home work on university's remote computer, unfortunatelly I go an error, when I try to use abys…
Comment: desgin a primer for CDS by yuxiang • 0
how can you know the primer is not bind to other gene site? how can you desgin an experiment? I use the FISH to identify the gene, how abo…
Comment: desgin a primer for CDS by yuxiang • 0
sorry for my late reply, I am a student, my profossor ask me to dsgin a primer for the specific cDNA, I have solved now, thanks for your re…
Comment: vg: Mapping fewer reads to a genome graph than a linear reference by samuel.a.odonnell ▴ 470
In this case filtering for quality might help correct for this overattributing feature?
Comment: ABySS genome assembler by GenoMax 129k
Did you see this guidance from ABySS manual: https://github.com/bcgsc/abyss#optimizing-the-parameters-k-and-kc
Traffic: 996 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6