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Limit : this year
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1,000 results • Page
5 of 20
Sort: Rank
Rank
Views
Votes
Replies
3
votes
3
replies
480
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 8 days ago by
swbarnes2
14k • written 9 days ago by
noodle
▴ 540
0
votes
2
replies
543
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
10 days ago by
航太郎
• 0
11
votes
12
replies
980
views
Downloaded pdb's on rcsb.org
rcsb
pdb
updated 10 days ago by
Ram
43k • written 10 days ago by
iamsmor
• 0
0
votes
0
replies
216
views
create genewise sync file in popoolation
popoolation
updated 10 days ago by
GenoMax
141k • written 10 days ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
381
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
10 days ago by
Ashok
• 0
0
votes
2
replies
418
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
9 days ago by
Ashok
• 0
0
votes
0
replies
216
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 10 days ago by
Ram
43k • written 10 days ago by
samuelkalandarov2002
▴ 10
1
vote
1
reply
374
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
10 days ago by
otieno43
▴ 30
0
votes
2
replies
428
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
9 days ago by
_quantum_girl_
▴ 10
0
votes
0
replies
206
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
6 days ago by
Javier
• 0
1
vote
4
replies
689
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 10 days ago by
Ram
43k • written 3 months ago by
turcoa1
• 0
0
votes
0
replies
181
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
10 days ago by
enferdeflame
• 0
1
vote
1
reply
421
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 8 days ago by
Gordon Smyth
★ 7.0k • written 10 days ago by
Chris
▴ 260
0
votes
0
replies
193
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 10 days ago by
Ram
43k • written 10 days ago by
carlopecoraro2
★ 2.5k
3
votes
9
replies
812
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 10 days ago by
Elisabeth Gasteiger
★ 2.4k • written 10 days ago by
Jacky
• 0
0
votes
1
reply
270
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 10 days ago by
GenoMax
141k • written 10 days ago by
predeus
★ 1.9k
0
votes
1
reply
274
views
DEseq2
RNA-seq
DESeq2
updated 10 days ago by
Ram
43k • written 10 days ago by
rrehimi
• 0
0
votes
0
replies
177
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 10 days ago by
Ram
43k • written 10 days ago by
carlopecoraro2
★ 2.5k
4
votes
2
replies
325
views
Assume "yes" as the answer to any prompts with bioconda
docker
container
bioconda
updated 10 days ago by
Juke34
8.5k • written 10 days ago by
njornet
▴ 20
1
vote
0
replies
177
views
Tutorial:
DNA Methylation: Sequencing Techniques
WGBS
RRBS
10 days ago by
Novogene
▴ 420
0
votes
1
reply
403
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 10 days ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
3
votes
3
replies
513
views
Korean human genome reference file
GWAS
reference
imputation
9 days ago by
SeoGyun
• 0
0
votes
0
replies
161
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 10 days ago by
Ram
43k • written 10 days ago by
bioinfo223
▴ 10
0
votes
0
replies
179
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
10 days ago by
P.
• 0
0
votes
0
replies
170
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
10 days ago by
ekirsch
• 0
1
vote
1
reply
411
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
9 days ago by
renan.igor
• 0
2
votes
1
reply
272
views
Pediococcus acidilactici sequence analysis
BLAST
Gene-Ontology
updated 10 days ago by
Ram
43k • written 11 days ago by
anasjamshed
▴ 120
3
votes
1
reply
599
views
What is the normalization status of metabric data?
metabric
normalization
microarray
cbioportal
updated 11 days ago by
etiennedanis
▴ 20 • written 19 months ago by
DareDevil
★ 4.3k
0
votes
0
replies
182
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
11 days ago by
synat.keam
▴ 100
0
votes
1
reply
273
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 11 days ago by
GenoMax
141k • written 11 days ago by
ycts
• 0
5
votes
4
replies
639
views
DEG analysis of RNA-seq data across multiple tissues and two conditions
RNA-seq
EdgeR
DEGs
DESeq2
10 days ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
279
views
Inconsistency in SNP detection pipelines for multi-sample analysis
vcf
bam
bcf
snps
updated 11 days ago by
LChart
3.9k • written 11 days ago by
George
▴ 10
0
votes
4
replies
588
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
9 days ago by
Kai Xin
• 0
1
vote
1
reply
227
views
Retrieve a % coverage for each transcript
RNA-seq
updated 11 days ago by
Ram
43k • written 11 days ago by
jammydodger123456
▴ 40
0
votes
1
reply
345
views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics
bootstrap
updated 11 days ago by
Klaus S
▴ 150 • written 16 days ago by
Zeng Hao
▴ 40
0
votes
2
replies
377
views
How can I solve this error?
metal
11 days ago by
22211020193
• 0
0
votes
0
replies
169
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 11 days ago by
GenoMax
141k • written 11 days ago by
srimmer
• 0
1
vote
2
replies
280
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 11 days ago by
Ram
43k • written 11 days ago by
aniigodwinn
• 0
2
votes
3
replies
427
views
Sheep reference genome remapping coordinates
reference
remap
sheep
coordinates
genome
10 days ago by
valentinatsar
• 0
2
votes
3
replies
318
views
Editing Human Reference Genome by adding a CDS
gff
agat
transcriptome
updated 11 days ago by
Michael
54k • written 11 days ago by
LDT
▴ 340
2
votes
10
replies
762
views
Questions about a bug when transferring cram file to bam file
sequence
samtools
bcftools
updated 10 days ago by
GenoMax
141k • written 11 days ago by
me
• 0
2
votes
2
replies
378
views
differential gene expression analysis when not all samples have an untreated counterpart
differential-expression
edgeR
10 days ago by
nhaus
▴ 310
0
votes
0
replies
357
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
11 days ago by
Ronin
• 0
4
votes
2
replies
1.8k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF
SAM
BAM
GFF
minimap2
updated 11 days ago by
Dr.Animo
▴ 130 • written 12 months ago by
BioinfoBee
• 0
2
votes
7
replies
833
views
Removing duplicates
duplicates
ONT
minimap2
updated 10 days ago by
noodle
▴ 540 • written 11 days ago by
quentinperriere
• 0
0
votes
1
reply
201
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 11 days ago by
DKA
▴ 40 • written 11 days ago by
james.melhorn
• 0
3
votes
4
replies
439
views
biomaRt error for different R version
biomaRt
R
updated 10 days ago by
GenoMax
141k • written 11 days ago by
manaswwm
▴ 510
0
votes
1
reply
191
views
Freyja plot error
Freyja
updated 11 days ago by
Ram
43k • written 11 days ago by
Adyasha
• 0
1
vote
2
replies
210
views
Interpretation of combined P values - RNA microarray meta analysis
metaanalysis
R
microarray
DExMA
combinedP
11 days ago by
hagl
▴ 10
0
votes
0
replies
160
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
11 days ago by
chemokine-1
▴ 10
1,000 results • Page
5 of 20
Recent Votes
Comment: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
A: Hard time trying to calculate Allele Frequency and DP from Platypus
Answer: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
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Comment: NGS forensics: how to know if data is fabricated
by
Philipp Bayer
8.4k
i've been in our org trying to push such a detector, our use-case is much more limited: I want to make simulated eDNA libraries as real as …
Answer: Differential Expression using Isoseq-supplemented reference transcriptome
by
Gordon Smyth
★ 7.0k
> What is the best method to test for differential abundance at the isoform level? Salmon returns TPM values instead of the counts which Li…
Answer: Finding batch and outlayers
by
Tigran
• 0
![enter image description here][1] [1]: /media/images/aa60b9ef-b08c-4093-9f0d-fb656a5c
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Can you post an IGV screenshot of what this looks like?
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Yeah some of the Illumina machines pre-trim adapters (not sure if this is still the standard). I've also definitely also seen quality-trimm…
Comment: PDB related issue
by
noodle
▴ 540
You can typically find much more useful info in the cif file, for example what you've found is called '_atom_site.pdbx_PDB_ins_code ' and d…
Comment: PDB related issue
by
Mensur Dlakic
★ 27k
The best way to find out is to read the original paper. My guess is that the residue has been crystallized in alternative conformations, wh…
Answer: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★ 27k
I share the opinion by @philippbayer I have seen enough questionable things in life and in science to keep me permanently jaded, but there…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I downloaded the data in two files from the link you provided. With this command: megahit -1 ERR072246_1.fastq.gz -2 ERR072246_2.fastq…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
If you have Linux the assembly should work on your system, but 8 GB is generally not enough for assembling larger genomes.
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I think you might be getting stuck on less relevant parts of my exercise. The most important point was that nothing is wrong with the data.…
Comment: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
Great comprehensive explanation and overview of the technologies -- with regards to sequencing assays, the one thing I'd add is SNV identif…
Answer: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
I think that term means slightly different things in different contexts. For example, it's useful to profile mRNA modifications (e.g. m6a) …
Comment: Cannot process all the reads in a fast5 file?
by
chujie
• 0
Hi, I met the same problem, have you found the solution?
Answer: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
Hi @fe3e6f65 , In a single sentence, the answer to your question can be summarized as, "*the resolution of a genomic technology refers to …
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